These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 607 fasta sequence [GGCAAGGGGGTAGGGGGGNGGGGGTGGGAGGGGGTCTAGTTCCTTCCTTCACTAGTAAGCTTAGGTTTAGACTTCTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCGAAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAGGT-GCGGCTGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGTCCTTCCTTGCATATTTCAGGGTTAAAATGTAATTTGGCCATCTGTCAGGGGTCTCCCTGTAAGACTTGCTGTACTCTCAACTTGCTTAATAAATTTCTAATCTGAGGCTGTAGCCTCAGTTTGTTCTAAAAAAAAA] [+] EMBL AU077726 [GGCAAGGGGGTAGGGGGGNGGGGGTGGGAGGGGGTCTAGTTCCTTCCTTCACTAGTAAGCTTAGGTTTAGACTTCTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCGAAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCT ] [+] EMBL CB000904 [ CTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCGAAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAGGT GCGGCT ] [+] EMBL AU077727 [ GCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAGCTAGC CATGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGTCCTTCCTTGCATATTTCAGGGTTAAAATGTAATTTGGCCATCTGTCAGGGGTCTCCCTGTAAGACTTGCTGTACTCTCAACTTGCTTAATAAATTTCTAATCTGAGGCTGTAGCCTCAGTTTGTTCTAAAAAAAAA] consensusID : consensus_6771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [NGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTANTTTACAAGGTGCGGCTGATGTGTTTCTCCGTTTGCCTTAGATGCTTCAACCTCCATAGAGAGGCCCCTTTTGGGTTCACATCCAGGCATCATTATATGCAGCTAGCCATGGATTATCAGCTCCTGTCNGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGNCCATCCTTGCA] [+] EMBL C74685 [NGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTANTTTACAAGGTGCGGCTGATGTGTTTCTCCGTTTGCCTTAGATGCTTCAACCTCCATAGAGAGGCCCCTTTTGGGTTCACATCCAGGCATCATTATATGCAGCTAGCCATGGATTATCAGCTCCTGTCNGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGNCCATCCTTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6771#0 GGCAAGGGGGTAGGGGGGNGGGGGTGGGAGGGGGTCTAGTTCCTTCCTTCACTAGTAAGC 60 consensus_6771#1 ------------------------------------------------------------ consensus_6771#0 TTAGGTTTAGACTTCTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCG 120 consensus_6771#1 ------------------------------------------------------------ consensus_6771#0 AAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTC 180 consensus_6771#1 ------------------------------------------------------------ consensus_6771#0 GGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCG 240 consensus_6771#1 ------------------------------------------------------------ consensus_6771#0 AAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTC 300 consensus_6771#1 ------NGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTC 54 ***************************************************** consensus_6771#0 CGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAG 360 consensus_6771#1 CGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAN-TTTACAAG 113 ************************************************** ******** consensus_6771#0 GTGCGGCTGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTG 420 consensus_6771#1 GTGCGGCTGATGTGTT--TCTCCGTTTGCCTTAGATGCTTCAA-----CCTCCATAGA-G 165 ********* * * * ** * ** **** ** * *** * * * * consensus_6771#0 TGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTA-GGTCCTTCCTT 479 consensus_6771#1 AGGCCCCTTTTGGGTTCACATCCAGGCATCATTATATGCAGCTAGCCATGGATTATCAGC 225 ** * * * ** * * ** * ** ** * * ** ** consensus_6771#0 GCATATTTCAGGGTTAAAATGT-AATTTGGCCATC--TGTCAGGGGTCTCCCTGTAAGAC 536 consensus_6771#1 TCCTGTCNGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGA- 284 * * * * * ** ** ** ***** ** *** ** * * *** consensus_6771#0 TTGCTGTACTCTCAACTTGCTTAATAAATTTCTAATCTGAGGCTGTAGCCTCAGTTTGTT 596 consensus_6771#1 ----AGGACCC---GATTGCTTTTTCTGTTTCTT-TCTAGGNCCATCCTTGCA------- 329 * ** * ****** * ***** *** * * * ** consensus_6771#0 CTAAAAAAAAA 607 consensus_6771#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||