These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [TTATATATGTGTTTCTAGCCCTTTAAAAGTCAATACTAAAAAGAAACTACTTTGAAAATATCTTAAAATCAACTGTAAAATTAAGTTTGAAAATTCTAATTTTTTATTTTTGCTTTGGCTTATTAGGGCAACCAATGAGGCTTTTAGAAATTACAAGTACTGGTTTTATCATCATGGAAAAAATCAGTGGTAATTCCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAAGAATAATATCC-AAATTGTCACTTGAAACCAGGAACAACAATGGTTTGCACTTTGCAGCTCCGCATTCACCTTCCTTCGTCAATGTGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCCCCTCCTCTGAGTTGCCATTCAGTGATGTAGCTCGGTTTCGTCACCACCTCAGTCACCTCAATATCTCCAGCTAGAATTGCCATGACCCTGGACATCGATGGTCGCTGGTACGGTGAACCTTGAGTGCAAAGGAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTCTACGATCCCGAGTGCTTGCCCCCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAAATCTTATCTTCTTCGCGTGAGTTGTCGGTGTTTGGTCGACCAACAACAGTCTCCAAGGCGACTACCCCAA] [+] EMBL CB629695 [TTATATATGTGTTTCTAGCCCTTTAAAAGTCAATACTAAAAAGAAACTACTTTGAAAATATCTTAAAATCAACTGTAAAATTAAGTTTGAAAATTCTAATTTTTTATTTTTGCTTTGGCTTATTAGGGCAACCAATGAGGCTTTTAGAAATTACAAGTACTGGTTTTATCATCATGGAAAAAATCAGTGGTAATTCCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAAGAATAATATCC AAATTGTCACTTGAAACCAGGAACAACAATGGTTTGCACTTTGCAGCTCCGCATTCACCTTCCTTCGTCAATGTGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCCCCTCCTCTGAGTTGCCATTCAGTGATGTAGCTCGGTTTCGTCACCACCTCAGTCACCTCAATATCTCCAGCTAGAATTGCCATGACCCTGGACATCGATGGTCGCTGGTACGGTGAACCTTGAGTGCAAAGGAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTCTACGATCCCGAGTGCTTGCCCCCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAAATCTTATCTTCTTCGCGTGAGTTG ] [+] EMBL CB637501 [ acAAAATAA GTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATTGTCACTTGAAACCAGGAACAACAATGGTTTGCACTTTGCAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAACTATCCCTGGATACCAGTTGAGAGGGGCGGGCTCCCTTTTTTCCCTGAACTCACCAGTAGTAGATCCAAAGTAGTAGGAGCTGGTGGCATAACTAGTGTCACCTCCTCCTCTGAGCTGCCATTCAGTGATGTAGCTCGGCTTCGTCACCACCTCAGTCACCTCAATATCTCCGGCTAGGATAGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAGGAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTCTACGATCCCGAGTGCTTGCCCGCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAGATCTTATCTTCTTCACGAAAGTTGTCGGTGTTTGGTCGACCAACAACAGTCTCCAAGGCGACTACCCCAA] consensusID : consensus_6783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [TTTTTTTTTGGTCATCAGGGAAAAAAAATCAGAATAAGTACTTTCGTATTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATGTCACTTGAAACCAGGAACAACAAGGTTTGCACTTGCAGCTCTGCATTCACCTTCCTTCGTCAAGCGTCCAGCTATCCCGTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCTCCTCCTCTGAGCTGCCATTCAGGATGTAGCTCGGCTTCGTCACCACCTCAGTCACCTCAATATCTCCGGCTAGGATAGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAGGAGTGCGGACAGATGACTCTCAAGGTTCCTTCTCATTGAATTCCTTGAGTTTGGGTCTACGATCCCGAGTGCTTGCCGCGTCTCATATAGGGTGCAGGCCATTCAAAGAGATAG] [-] EMBL BI812942 [TTTTTTTTTGGTCATCAGGGAAAAAAAATCAGAATAAGTACTTTCGTATTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATGTCACTTGAAACCAGGAACAACAAGGTTTGCACTTGCAGCTCTGCATTCACCTTCCTTCGTCAAGCGTCCAGCTATCCCGTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCTCCTCCTCTGAGCTGCCATTCAGGATGTAGCTCGGCTTCGTCACCACCTCAGTCACCTCAATATCTCCGGCTAGGATAGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAGGAGTGCGGACAGATGACTCTCAAGGTTCCTTCTCATTGAATTCCTTGAGTTTGGGTCTACGATCCCGAGTGCTTGCCGCGTCTCATATAGGGTGCAGGCCATTCAAAGAGATAG] consensusID : consensus_6783#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [TTTTTTGAAAAAAAATCAGAATAAGTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATTTGTCACTTGAAACCAGGAACAACAATGGTTTGGACTTTGGAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGGTAAGAATCCAGAGGTAGGTAGGAGCTGGTGGGCATAAGCTAGGTGGTCACCTCCTCCCTCTGGAGGCTGGNCATTCACGGTGACATGGTAAGCTCGGGCTTCGGTACAACACCTCAGTCACCTCAATATCTCCGGGTAGGATAGGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGAACCTTGAGTGCAAAGGAGTGCGGNACAGATGACTCTCAAGGGTTCCTTCTCATTGAATTCCTTGAGTTGGG] [-] EMBL BI812814 [TTTTTTGAAAAAAAATCAGAATAAGTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATTTGTCACTTGAAACCAGGAACAACAATGGTTTGGACTTTGGAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGGTAAGAATCCAGAGGTAGGTAGGAGCTGGTGGGCATAAGCTAGGTGGTCACCTCCTCCCTCTGGAGGCTGGNCATTCACGGTGACATGGTAAGCTCGGGCTTCGGTACAACACCTCAGTCACCTCAATATCTCCGGGTAGGATAGGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGAACCTTGAGTGCAAAGGAGTGCGGNACAGATGACTCTCAAGGGTTCCTTCTCATTGAATTCCTTGAGTTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6783#0 TTATATATGTGTTTCTAGCCCTTTAAAAGTCAATACTAAAAAGAAACTACTTTGAAAATA 60 consensus_6783#1 ------------------------------------------------------------ consensus_6783#2 ------------------------------------------------------------ consensus_6783#0 TCTTAAAATCAACTGTAAAATTAAGTTTGAAAATTCTAATTTTTTATTTTTGCTTTGGCT 120 consensus_6783#1 ------------------------------------------------------------ consensus_6783#2 ------------------------------------------------------------ consensus_6783#0 TATTAGGGCAACCAATGAGGCTTTTAGAAATTACAAGTACTGGTTTTATCATCATGGAAA 180 consensus_6783#1 -------------------------------------TTTTTTTTTGGTCATCAGGGAAA 23 consensus_6783#2 --------------------------------------------------TTTTTTGAAA 10 * **** consensus_6783#0 AAA--TCAGTG---GTAATTCCGTATTTGTTTTCTGCAACTTACATCAACATACAATTAT 235 consensus_6783#1 AAAAATCAGAATAAGTACTTTCGTATT-GTTTTCTGCAACTTACATCAACATACAATTAT 82 consensus_6783#2 AAAAATCAGAATAAGTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTAT 70 *** **** *** ** ****** ******************************** consensus_6783#0 ATAGGCAAGAATAATATCCAAA--TTGTCACTTGAAACCAGGAACAACAATGGTTTGCAC 293 consensus_6783#1 ATAGGCAGGAATAATATCCAAA--ATGTCACTTGAAACCAGGAACAACAA-GGTTTGCAC 139 consensus_6783#2 ATAGGCAGGAATAATATCCAAAATTTGTCACTTGAAACCAGGAACAACAATGGTTTGGAC 130 ******* ************** ************************* ****** ** consensus_6783#0 TTTGCAGCTCCGCATTCACCTTCCTTCGTCAATGTGTCCAGCTATCCC-TGGATACGAGT 352 consensus_6783#1 TT-GCAGCTCTGCATTCACCTTCCTTCGTCAA-GCGTCCAGCTATCCCGTGGATACGAGT 197 consensus_6783#2 TTTGGAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAGCTATCCC-TGGATACGAGT 189 ** * ***** ********************* * ************* *********** consensus_6783#0 TGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGT---AGATCCAGAGT--A 407 consensus_6783#1 TGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGT---AGATCCAGAGT--A 252 consensus_6783#2 TGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGGTAAGAATCCAGAGGTAG 249 ****************************************** ******** consensus_6783#0 GTAGGAGCTGGTGG-CATA-GCTAGT--GTCACCCCCTCC-TCTGAG---TTGCCATTCA 459 consensus_6783#1 GTAGGAGCTGGTGG-CATA-GCTAGT--GTCACCTCCTCC-TCTGAG---CTGCCATTCA 304 consensus_6783#2 GTAGGAGCTGGTGGGCATAAGCTAGGTGGTCACCTCCTCCCTCTGGAGGCTGGNCATTCA 309 ************** **** ***** ****** ***** **** * ****** consensus_6783#0 --GTGATGT----AGCTCGG-TTTCGTCAC--CACCTCAGTCACCTCAATATCTCCAGCT 510 consensus_6783#1 --G-GATGT----AGCTCGG-CTTCGTCAC--CACCTCAGTCACCTCAATATCTCCGGCT 354 consensus_6783#2 CGGTGACATGGTAAGCTCGGGCTTCGGTACAACACCTCAGTCACCTCAATATCTCCGGGT 369 * ** * ******* **** ** ************************ * * consensus_6783#0 AGAATTG-CCATGACCCTGGACATCGATGGTCGCTGGTACGGTGAACCTTGAGTGCAAAG 569 consensus_6783#1 AGGATAG-CCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAG 413 consensus_6783#2 AGGATAGGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGAACCTTGAGTGCAAAG 429 ** ** * ******* ******** ***** ******* ***** ************** consensus_6783#0 GAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTC 629 consensus_6783#1 GAGTGCGG-ACAGATGACTCTCAAGG-TTCCTTCTCATTGAATTCCTTGAGTTT-GGGTC 470 consensus_6783#2 GAGTGCGGNACAGATGACTCTCAAGGGTTCCTTCTCATTGAATTCCTTGAGTTGGG---- 485 ******** *** ************* ************************** * consensus_6783#0 TACGATCCCGAGTGCTTGCCCCCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAAAT 689 consensus_6783#1 TACGATCCCGAGTGCTTGCCGCGTCTCATATAGGGTGCAGGCC-ATTCAAAGAGATAG-- 527 consensus_6783#2 ------------------------------------------------------------ consensus_6783#0 CTTATCTTCTTCGCGTGAGTTGTCGGTGTTTGGTCGACCAACAACAGTCTCCAAGGCGAC 749 consensus_6783#1 ------------------------------------------------------------ consensus_6783#2 ------------------------------------------------------------ consensus_6783#0 TACCCCAA 757 consensus_6783#1 -------- consensus_6783#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||