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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1409 fasta sequence
[TTGCTACTGTTGTTTTGGAAGCGATAGCTTGGAGTTGTAAGGTGAGGTGAGGTGCAGGGTGGTCGATCAGTAGGTGGAAAGGAGGAATCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAAGGCCGGGGCGGCGGCGGCGGCGGCGGCGGCGAAGGGAGGAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTC-GTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCAAGTGTCCAACTGTACAAAGAAGGTACAAGACAATC-AAAG-CCCCAAAGGGAAAAATATATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069276 [TTGCTACTGTTGTTTTGGAAGCGATAGCTTGGAGTTGTAAGGTGAGGTGAGGTGCAGGGTGGTCGATCAGTAGGTGGAAAGGAGGAATCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAAGGCCGGGGCGGCGGCGGCGGCGGCGGCGGCGAAGGGAGGAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTC GTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTA ]
[+] EMBL BI800629 [ CGCGTCCAGCGACGGCACGC CCTCAAGTTCTGGGAGCTCAAGAACGC GCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCTGTCGCCGGCGAGGCGAGCGGAGCTTGCCA GCCGTCACCTTCTTGTTCATGGCGTTCCATCCGGACAGGGAGATGGTGTACCTGT GACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGA GTC GGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTT GCTGTTTCCGTTCTCGCGCCATCTGGCC CCAGCTTGGCCTGATTGGTCTATGTGGCTGATA GCTGGCC GCGATGTTGAC ATGGCATGTGGGCCC ATGCTTGTCTGCAACATTGGGCAC AT CCGTTCCGTTCAAGTGTCCAACTGTAC AAGAAGGTACAAGACAATC AAAG CCCCAAAGGGAAAAATATATGCTAAAAA ]
[+] EMBL CA756720 [ CGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCAAGTGTCCAACTGTACAAAGAAGGTACAAGACAATCAAAAGAAAAAAAAGGGAAAAATATATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1179 fasta sequence
[TCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTACAAGA]
[+] EMBL AK061090 [TCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTACAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6788#0 TTGCTACTGTTGTTTTGGAAGCGATAGCTTGGAGTTGTAAGGTGAGGTGAGGTGCAGGGT 60
consensus_6788#1 ------------------------------------------------------------
consensus_6788#0 GGTCGATCAGTAGGTGGAAAGGAGGAATCGAGGAGATGGACGGCGAGATTGGGGAGGACA 120
consensus_6788#1 ---------------------------TCGAGGAGATGGACGGCGAGATTGGGGAGGACA 33
*********************************
consensus_6788#0 TGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGG 180
consensus_6788#1 TGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGG 93
************************************************************
consensus_6788#0 CCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCA 240
consensus_6788#1 CCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCA 153
************************************************************
consensus_6788#0 CCTCCGGTGTGCTGTACCAGGAAGGCCGGGGCGGCGGCGGCGGCGGCGGCGGCGAAGGGA 300
consensus_6788#1 CCTCCGGTGTGCTGTACCAGGA-------------------------------------- 175
**********************
consensus_6788#0 GGAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCG 360
consensus_6788#1 ------GGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCG 229
******************************************************
consensus_6788#0 TGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGT 420
consensus_6788#1 TGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGT 289
************************************************************
consensus_6788#0 GCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACC 480
consensus_6788#1 GCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACC 349
************************************************************
consensus_6788#0 CGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGC 540
consensus_6788#1 CGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGC 409
************************************************************
consensus_6788#0 TGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCC 600
consensus_6788#1 TGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCC 469
************************************************************
consensus_6788#0 CCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGC 660
consensus_6788#1 CCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGC 529
************************************************************
consensus_6788#0 TCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGA 720
consensus_6788#1 TCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGA 589
************************************************************
consensus_6788#0 TCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCG 780
consensus_6788#1 TCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCG 649
************************************************************
consensus_6788#0 CGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCC 840
consensus_6788#1 CGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCC 709
************************************************************
consensus_6788#0 GCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGG 900
consensus_6788#1 GCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGG 769
************************************************************
consensus_6788#0 CCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGG 960
consensus_6788#1 CCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGG 829
************************************************************
consensus_6788#0 CGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGA 1020
consensus_6788#1 CGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGA 889
************************************************************
consensus_6788#0 TGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCG 1080
consensus_6788#1 TGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCG 949
************************************************************
consensus_6788#0 AGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTT 1140
consensus_6788#1 AGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTT 1009
************************************************************
consensus_6788#0 GGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTG 1200
consensus_6788#1 GGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTG 1069
************************************************************
consensus_6788#0 ATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGG 1260
consensus_6788#1 ATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGG 1129
************************************************************
consensus_6788#0 GCACAATGCCGTTCCGTTCAAGTGTCCAACTGTACAAAGAAGGTACAAGACAATCAAAGC 1320
consensus_6788#1 GCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTACAAGA---------- 1179
******************* ******************************
consensus_6788#0 CCCAAAGGGAAAAATATATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1380
consensus_6788#1 ------------------------------------------------------------
consensus_6788#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1409
consensus_6788#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||