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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1504 fasta sequence
[CTCGCTGCCCACTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATGGTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGAGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGACGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGCGGCGGACGACGAGGAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAGCTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGACGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTATCAAGTGGATCCTCGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTTCGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCTGCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCTGTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGC-GGCGCCG-GCGCCGCCG-GCCATGGC-GCCGCCGC-CGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCACCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTGGTTTGGTTTGTGAGAAGGAGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGAGCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATGGAGCACA]
[+] EMBL AK064396 [CTCGCTGCCCACTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATGGTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGAGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGACGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGCGGCGGACGACGAGGAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAGCTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGACGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTATCAAGTGGATCCTCGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTTCGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCTGCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCTGTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGC GGCGCCG GCGCCGCCG GCCATGGC GCCGCCGC CGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCACCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTGGTTTGGTTTGTGAGAAGGAGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGAGCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATGGAGCACA]
[+] EMBL AK101602 [ CTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATGGTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGAGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGACGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGCGGCGGACGACGAGAAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAGCTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGACGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTGTCAAGTGGATCCTCGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTTCGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCTGCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCTGTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGC GGCGCCG GCGCCGCCG GCCATGGC GCCGCCGC CGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCATCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTGGTTTGGTTTGTGAGAAGGAGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGAGCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATGGAGCA ]
[+] EMBL CB967090 [ TCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGCTGGCGCCGTGCGCCGCCGTGCCATGGCTGCCGCCGCGCGCCG ]
consensusID : consensus_6789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[AGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCAACGCCGTCGGCTTCATCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCGGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCTCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGNTGTTGATTGGATTGGGTTTGGGTTTGTGAGAAGGGAGAAGAGATAATGAACAAGGAAAAAAGGGGCTTGAGTGAGCTCTCTAANGAGAGAGAGCTTGAGTTACTTGAAGCCCAAANTTCAGNGCTCAAATGGAGCACAT]
[+] EMBL CB096272 [AGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCAACGCCGTCGGCTTCATCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCGGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCTCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGNTGTTGATTGGATTGGGTTTGGGTTTGTGAGAAGGGAGAAGAGATAATGAACAAGGAAAAAAGGGGCTTGAGTGAGCTCTCTAANGAGAGAGAGCTTGAGTTACTTGAAGCCCAAANTTCAGNGCTCAAATGGAGCACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6789#0 CTCGCTGCCCACTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATG 60
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 GTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGA 120
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 GTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGA 180
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 CGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGC 240
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 GGCGGACGACGAGGAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAG 300
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 CTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGA 360
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 CGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTATCAAGTGGATCCT 420
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 CGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTT 480
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 CGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCT 540
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 GCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCT 600
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 GTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGA 660
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 GCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCT 720
consensus_6789#1 ------------------------------------------------------------
consensus_6789#0 CCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGCGGCGCCGGCGCCGCCGGCCA 780
consensus_6789#1 -----------------------------AGTGCT-CGGCGGCGT-GCGGCTTCTCGCTG 29
* * ******** * ** * **
consensus_6789#0 TGGCGCCGCCGCCGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCACCTTTGCCACAGC 840
consensus_6789#1 ACGTGCCAA----GAAGACGGCGCCGACCTCAACGCCGTCGGCTTCATCTTTGCCACAGC 85
* *** * * * *** * ******************** ************
consensus_6789#0 TGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGC 900
consensus_6789#1 TGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGC 145
************************************************************
consensus_6789#0 TGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTC 960
consensus_6789#1 TGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTC 205
************************************************************
consensus_6789#0 TCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGA 1020
consensus_6789#1 TCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGA 265
************************************************************
consensus_6789#0 CATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGAT 1080
consensus_6789#1 CATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGAT 325
************************************************************
consensus_6789#0 TACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTT 1140
consensus_6789#1 TACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTT 385
************************************************************
consensus_6789#0 CGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAG 1200
consensus_6789#1 CGCTGCGACGGCGATGAATAAGCGGCTCAGGCCGGAGCCGCCGCGAATCCGTTGAGGAAG 445
********************************* **************************
consensus_6789#0 CTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGAT 1260
consensus_6789#1 CTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGAT 505
************************************************************
consensus_6789#0 CTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTA 1320
consensus_6789#1 CTTCTCCTTTTCTCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTA 565
************ ***********************************************
consensus_6789#0 TTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTG 1380
consensus_6789#1 TTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGNTGTTG-ATTGGATTG 624
******************************************** ***** *********
consensus_6789#0 GTTT--GGTTTGTGAGAAGG-AGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGA 1437
consensus_6789#1 GGTTTGGGTTTGTGAGAAGGGAGAAGAGATAATGAACAAGGAAAAAAGGGGCTTGAGTGA 684
* ** ************** ****************** * ***** *** *******
consensus_6789#0 GCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATG 1497
consensus_6789#1 GCTCTC-TAANGAGAG-AGAGCTTGAGTTACTTGAAGCCC-AAANTTCAGNGCTCAAATG 741
****** *** ***** *********************** *** * *** ** ******
consensus_6789#0 GAGCACA- 1504
consensus_6789#1 GAGCACAT 749
*******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||