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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1798 fasta sequence
[TCAGTCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAGCTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGACCGGCGGCGACGACGCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGCCCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTCTTCTACATCTGGGTCGTCTGCCTCTGCTCCTCGTTGCCAATTCAGTCGTTGTTTCCGTATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCTATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGGGCATTTTTGCTGACAAATATGGGAGGAAGCCCTGCATTGTGATCAGTATCCTCTCAGTGATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAGGGGATTACTTGGATTACTCTGTGGTATACTAGGACCAATCAAGGCCTATGCTTCAGAGGTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATAGCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCAAATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTCATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCACATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGACTTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTGAAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACAGCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGTTTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTACCAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTATGCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACAATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTATCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTGGATGGTCGAGGCATATGATAAACAGCTAACGGGATCTTGTTTCATCTAAAAAAAAAAAAAAAAA]
[+] EMBL AK065048 [TCAGTCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAGCTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGACCGGCGGCGACGACGCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGCCCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTCTTCTACATCTGGGTCGTCTGCCTCTGCTCCTCGTTGCCAATTCAGTCGTTGTTTCCGTATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCTATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGGGCATTTTTGCTGACAAATATGGGAGGAAGCCCTGCATTGTGATCAGTATCCTCTCAGTGATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAGGGGATTACTTGGATTACTCTGTGGTATACTAGGACCAATCAAGGCCTATGCTTCAGAGGTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATAGCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCAAATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTCATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCACATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGACTTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTGAAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACAGCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGTTTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTACCAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTATGCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACAATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTATCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTGGATGGTCGAGGCATATGATAAACAGCTAACGGGATCT ]
[+] EMBL AF543418 [ TCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAGCTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGGCCGGCGGCGACGACGCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGCCCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTCTTCTACATCTGGGTCGTCTGCCTCTGCTCCTCGTTGCCAATTCAGTCGTTGTTTCCGTATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCTATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGGGCATTTTTGCTGACAAATATGGGAGGAAGCCCTGCATTGTGATCAGTATCCTCTCAGTGATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAGGGGATTACTTGGATTACTCTGTGGTATACTAGGACCAATCAAGGCCTATGCTTCAGAGGTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATAGCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCAAATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTCATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCACATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGACTTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTGAAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACAGCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGTTTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTACCAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTATGCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACAATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTATCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTGGATGGTCGAGGCATATGATAAACAGCTAACGGGATCTTGTTTCATCTAAAAAAAAAAAAAAAAA]
[+] EMBL BI812792 [ CCATTCCG TATGCA CGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCAT GCTAACCTGTATGTTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACCATTACTATTGCATGCAACATCCTGC AAACCCTGCAGTGACGCAAGAACCAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTTTAGTTAGGTAAC AAAAGGCCAGAATTTATCAGATTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCCGTTTGGTGGTATCTTTGATTTCaaaaa ]
consensusID : consensus_6790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[ACACCTCTCTCCCCTACGCCCTAATCCCCTTCCCTCTTGCACGCCGCGCCAATCTCCGCCGCCAGAGCGTCGTCGACCTGCGCAACAAACATCCACGGCGGCACCGGCAACCGCTCCCTGCGCCACCTCCTGATCGACGGGATCGCTCCCTGCGCTGCCGCCTCCGCCGATCACTTCCTGCGCCGCCGCACCTCACCCACAACTCTCTCCCCCACGCCCTAATCCCCTTTCCTCTCGCACACCGCGCCGATCTCCGCCGCCAGAGCATCGTCGACCCGCACAACCAACGTCCATGGTGGCAGTCCGCAATCGACCCCTGCCACCACGCAGTTTCTGCACACTGCTACAGTTATCAGCAACTTAATTGTGCTTGCAATGATTTTGCGTGGACAGACGCTGGTGTTGAGTCCAGCGCTTTCCATGATAGTGGACCAATTGAGGAAGCTCCATGCATTTCTTCCAGACGGCCTTCTTGCAAGCAGTCAGGGAAATAAAGGTACATTCTTCTTAAGCCCATCCCTATGCAATCAAGGCCTATGCTTTCAGAGTTCTGCAGGAAGGAGCACCAAGCTCTTGA]
[+] EMBL CF277218 [ACACCTCTCTCCCCTACGCCCTAATCCCCTTCCCTCTTGCACGCCGCGCCAATCTCCGCCGCCAGAGCGTCGTCGACCTGCGCAACAAACATCCACGGCGGCACCGGCAACCGCTCCCTGCGCCACCTCCTGATCGACGGGATCGCTCCCTGCGCTGCCGCCTCCGCCGATCACTTCCTGCGCCGCCGCACCTCACCCACAACTCTCTCCCCCACGCCCTAATCCCCTTTCCTCTCGCACACCGCGCCGATCTCCGCCGCCAGAGCATCGTCGACCCGCACAACCAACGTCCATGGTGGCAGTCCGCAATCGACCCCTGCCACCACGCAGTTTCTGCACACTGCTACAGTTATCAGCAACTTAATTGTGCTTGCAATGATTTTGCGTGGACAGACGCTGGTGTTGAGTCCAGCGCTTTCCATGATAGTGGACCAATTGAGGAAGCTCCATGCATTTCTTCCAGACGGCCTTCTTGCAAGCAGTCAGGGAAATAAAGGTACATTCTTCTTAAGCCCATCCCTATGCAATCAAGGCCTATGCTTTCAGAGTTCTGCAGGAAGGAGCACCAAGCTCTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6790#0 TCAGTCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAG 60
consensus_6790#1 ------------ACACCTCTCTCCCCTACGCCCTAATCCCCTTCCCTCTTGCACGCCGCG 48
********* *** * * ** * * * * *
consensus_6790#0 CTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGACCGGCGGCGACGAC 120
consensus_6790#1 CCAATCTCCGCCGCCAGAGCG---TCGTCGACCTGCGCAACAAACATCCACGGCGGCACC 105
* * ** * ** * * * ** ** * ** * * ***** * *
consensus_6790#0 GCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGC 180
consensus_6790#1 G--GCAACCGCTCC--CTGCGCCACCTCCTG-ATCGACG--GGATCGCTCCCTGCGCTGC 158
* ** * ** * * ****** * * *** ** ** * * *** ***
consensus_6790#0 CCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTC 240
consensus_6790#1 CGCCTCCGCCGATC-------ACTTCCTGCGCCGCCGC--ACCTCACCCACAACTCTCTC 209
* * *** * * * * **** *** * ** ** ** * **
consensus_6790#0 TTCTACATCTGGGTCGTCTG-CCTCTGCTCCTCGTTGCCAAT-TCAGTCGTTGTTTCCGT 298
consensus_6790#1 CCCCACGCCCTAATCCCCTTTCCTCTCGCACACCGCGCCGATCTCCGCCGCCAGAGCATC 269
* ** * ** ** ***** * * *** ** ** * ** *
consensus_6790#0 ATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCT 358
consensus_6790#1 GTCGAC-CCGCACAACCAACGTCC--ATGGTGGCAGTCCGCAATC--GACCCCTGCCACC 324
** * ** * ** * * * ** *** * * ** * *
consensus_6790#0 ATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGG 418
consensus_6790#1 ACGCAGTTTCTGC--ACACTGCTACAGTTATCAGCA-ACTTAATTGTGCT-TGCAATGA- 379
* ** * ** ** ** ** * * * * * ** **** *** ***
consensus_6790#0 GCATTTTTGCTGACAAATATGGGAGG-AAGCCCTGCATTGTGATCAGTATCCTCTCAGT- 476
consensus_6790#1 --TTTTGCGTGGACAGACGCTGGTGTTGAGTCCAGCGCTTTCCATGATAGTGGACCAATT 437
*** * **** * ** * ** ** ** * * ** ** *
consensus_6790#0 GATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAG 536
consensus_6790#1 GAGGAAGCTCCATGCATTTCTT----CCAG-ACGGCCTTCTTGCAAGCAGTCAGGGAAAT 492
** * * * ** * ** *** *** * * ** * *** * *
consensus_6790#0 GGGATTACTTGGATTACTCTGTGGTATACTAGGAC-CAATCAAGGCCTATGCTT-CAGAG 594
consensus_6790#1 AAAGGTAC----ATTCTTCTTAAGCCCATCCCTATGCAATCAAGGCCTATGCTTTCAGAG 548
*** *** *** * * * ****************** *****
consensus_6790#0 GTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATA 654
consensus_6790#1 TTCTGCAGGAAGGAGCACCAAGCTCTTGA------------------------------- 577
***************************
consensus_6790#0 GCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCA 714
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 AATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTC 774
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 ATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCAC 834
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 ATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGAC 894
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 TTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTG 954
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 AAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACA 1014
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 GCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGT 1074
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 TTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTAC 1134
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 CAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTAT 1194
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 GCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGT 1254
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 CTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACA 1314
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 ATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTT 1374
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 GCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCT 1434
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 GGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAG 1494
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 ATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCA 1554
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 TTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTA 1614
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 TCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAAT 1674
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 GTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTG 1734
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 GATGGTCGAGGCATATGATAAACAGCTAACGGGATCTTGTTTCATCTAAAAAAAAAAAAA 1794
consensus_6790#1 ------------------------------------------------------------
consensus_6790#0 AAAA 1798
consensus_6790#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||