These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1798 fasta sequence [TCAGTCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAGCTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGACCGGCGGCGACGACGCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGCCCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTCTTCTACATCTGGGTCGTCTGCCTCTGCTCCTCGTTGCCAATTCAGTCGTTGTTTCCGTATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCTATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGGGCATTTTTGCTGACAAATATGGGAGGAAGCCCTGCATTGTGATCAGTATCCTCTCAGTGATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAGGGGATTACTTGGATTACTCTGTGGTATACTAGGACCAATCAAGGCCTATGCTTCAGAGGTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATAGCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCAAATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTCATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCACATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGACTTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTGAAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACAGCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGTTTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTACCAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTATGCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACAATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTATCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTGGATGGTCGAGGCATATGATAAACAGCTAACGGGATCTTGTTTCATCTAAAAAAAAAAAAAAAAA] [+] EMBL AK065048 [TCAGTCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAGCTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGACCGGCGGCGACGACGCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGCCCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTCTTCTACATCTGGGTCGTCTGCCTCTGCTCCTCGTTGCCAATTCAGTCGTTGTTTCCGTATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCTATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGGGCATTTTTGCTGACAAATATGGGAGGAAGCCCTGCATTGTGATCAGTATCCTCTCAGTGATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAGGGGATTACTTGGATTACTCTGTGGTATACTAGGACCAATCAAGGCCTATGCTTCAGAGGTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATAGCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCAAATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTCATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCACATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGACTTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTGAAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACAGCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGTTTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTACCAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTATGCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACAATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTATCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTGGATGGTCGAGGCATATGATAAACAGCTAACGGGATCT ] [+] EMBL AF543418 [ TCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAGCTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGGCCGGCGGCGACGACGCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGCCCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTCTTCTACATCTGGGTCGTCTGCCTCTGCTCCTCGTTGCCAATTCAGTCGTTGTTTCCGTATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCTATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGGGCATTTTTGCTGACAAATATGGGAGGAAGCCCTGCATTGTGATCAGTATCCTCTCAGTGATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAGGGGATTACTTGGATTACTCTGTGGTATACTAGGACCAATCAAGGCCTATGCTTCAGAGGTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATAGCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCAAATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTCATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCACATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGACTTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTGAAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACAGCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGTTTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTACCAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTATGCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACAATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTATCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTGGATGGTCGAGGCATATGATAAACAGCTAACGGGATCTTGTTTCATCTAAAAAAAAAAAAAAAAA] [+] EMBL BI812792 [ CCATTCCG TATGCA CGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCAT GCTAACCTGTATGTTCTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACCATTACTATTGCATGCAACATCCTGC AAACCCTGCAGTGACGCAAGAACCAAGAGGGGTTGCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCTGGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAGATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCATTTTTCGCCTTGCCGGATATGCGATGATGTTTAGTTAGGTAAC AAAAGGCCAGAATTTATCAGATTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAATGTTCAGTTGTGTAATCCGTTTGGTGGTATCTTTGATTTCaaaaa ] consensusID : consensus_6790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [ACACCTCTCTCCCCTACGCCCTAATCCCCTTCCCTCTTGCACGCCGCGCCAATCTCCGCCGCCAGAGCGTCGTCGACCTGCGCAACAAACATCCACGGCGGCACCGGCAACCGCTCCCTGCGCCACCTCCTGATCGACGGGATCGCTCCCTGCGCTGCCGCCTCCGCCGATCACTTCCTGCGCCGCCGCACCTCACCCACAACTCTCTCCCCCACGCCCTAATCCCCTTTCCTCTCGCACACCGCGCCGATCTCCGCCGCCAGAGCATCGTCGACCCGCACAACCAACGTCCATGGTGGCAGTCCGCAATCGACCCCTGCCACCACGCAGTTTCTGCACACTGCTACAGTTATCAGCAACTTAATTGTGCTTGCAATGATTTTGCGTGGACAGACGCTGGTGTTGAGTCCAGCGCTTTCCATGATAGTGGACCAATTGAGGAAGCTCCATGCATTTCTTCCAGACGGCCTTCTTGCAAGCAGTCAGGGAAATAAAGGTACATTCTTCTTAAGCCCATCCCTATGCAATCAAGGCCTATGCTTTCAGAGTTCTGCAGGAAGGAGCACCAAGCTCTTGA] [+] EMBL CF277218 [ACACCTCTCTCCCCTACGCCCTAATCCCCTTCCCTCTTGCACGCCGCGCCAATCTCCGCCGCCAGAGCGTCGTCGACCTGCGCAACAAACATCCACGGCGGCACCGGCAACCGCTCCCTGCGCCACCTCCTGATCGACGGGATCGCTCCCTGCGCTGCCGCCTCCGCCGATCACTTCCTGCGCCGCCGCACCTCACCCACAACTCTCTCCCCCACGCCCTAATCCCCTTTCCTCTCGCACACCGCGCCGATCTCCGCCGCCAGAGCATCGTCGACCCGCACAACCAACGTCCATGGTGGCAGTCCGCAATCGACCCCTGCCACCACGCAGTTTCTGCACACTGCTACAGTTATCAGCAACTTAATTGTGCTTGCAATGATTTTGCGTGGACAGACGCTGGTGTTGAGTCCAGCGCTTTCCATGATAGTGGACCAATTGAGGAAGCTCCATGCATTTCTTCCAGACGGCCTTCTTGCAAGCAGTCAGGGAAATAAAGGTACATTCTTCTTAAGCCCATCCCTATGCAATCAAGGCCTATGCTTTCAGAGTTCTGCAGGAAGGAGCACCAAGCTCTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6790#0 TCAGTCAGTTCCACACCTCTCCTTCCTTTAATTTCTCTCTGCTCGCCGGAGACAGACTAG 60 consensus_6790#1 ------------ACACCTCTCTCCCCTACGCCCTAATCCCCTTCCCTCTTGCACGCCGCG 48 ********* *** * * ** * * * * * consensus_6790#0 CTTAGCTAGTAGGAGAGGGAGGAACTAATGGCCGCCGGAGACAAGACCGGCGGCGACGAC 120 consensus_6790#1 CCAATCTCCGCCGCCAGAGCG---TCGTCGACCTGCGCAACAAACATCCACGGCGGCACC 105 * * ** * ** * * * ** ** * ** * * ***** * * consensus_6790#0 GCTGCGGCGGCGGCGGCGGCGCCATTGCTGGTGTCGGCGGCGGGGAGGCGGCGGCGGTGC 180 consensus_6790#1 G--GCAACCGCTCC--CTGCGCCACCTCCTG-ATCGACG--GGATCGCTCCCTGCGCTGC 158 * ** * ** * * ****** * * *** ** ** * * *** *** consensus_6790#0 CCCGGGTGCCTGACGGAGGAGAGGTGCAAGGCCGACGCCGGCATCCCCTACCTCAACTTC 240 consensus_6790#1 CGCCTCCGCCGATC-------ACTTCCTGCGCCGCCGC--ACCTCACCCACAACTCTCTC 209 * * *** * * * * **** *** * ** ** ** * ** consensus_6790#0 TTCTACATCTGGGTCGTCTG-CCTCTGCTCCTCGTTGCCAAT-TCAGTCGTTGTTTCCGT 298 consensus_6790#1 CCCCACGCCCTAATCCCCTTTCCTCTCGCACACCGCGCCGATCTCCGCCGCCAGAGCATC 269 * ** * ** ** ***** * * *** ** ** * ** * consensus_6790#0 ATCTGTACTTCATGATCAGGGACTTGAAAGTCGCAAAGGAAGAGCAAGATATTGGGTTCT 358 consensus_6790#1 GTCGAC-CCGCACAACCAACGTCC--ATGGTGGCAGTCCGCAATC--GACCCCTGCCACC 324 ** * ** * ** * * * ** *** * * ** * * consensus_6790#0 ATGCCGGTTTTGTCGGGGCTACTTATTTCCTTGGAAGAACTATCAGTGCAGTGCCATGGG 418 consensus_6790#1 ACGCAGTTTCTGC--ACACTGCTACAGTTATCAGCA-ACTTAATTGTGCT-TGCAATGA- 379 * ** * ** ** ** ** * * * * * ** **** *** *** consensus_6790#0 GCATTTTTGCTGACAAATATGGGAGG-AAGCCCTGCATTGTGATCAGTATCCTCTCAGT- 476 consensus_6790#1 --TTTTGCGTGGACAGACGCTGGTGTTGAGTCCAGCGCTTTCCATGATAGTGGACCAATT 437 *** * **** * ** * ** ** ** * * ** ** * consensus_6790#0 GATTGTGTTTAACACACTCTTTGGCCTCAGCACGACTTACTGGATGGCAATTGTTACCAG 536 consensus_6790#1 GAGGAAGCTCCATGCATTTCTT----CCAG-ACGGCCTTCTTGCAAGCAGTCAGGGAAAT 492 ** * * * ** * ** *** *** * * ** * *** * * consensus_6790#0 GGGATTACTTGGATTACTCTGTGGTATACTAGGAC-CAATCAAGGCCTATGCTT-CAGAG 594 consensus_6790#1 AAAGGTAC----ATTCTTCTTAAGCCCATCCCTATGCAATCAAGGCCTATGCTTTCAGAG 548 *** *** *** * * * ****************** ***** consensus_6790#0 GTCTGCAGGAAGGAGCACCAAGCTCTTGGAATTTCCCTTGTCACATCCTCGCGAGCAATA 654 consensus_6790#1 TTCTGCAGGAAGGAGCACCAAGCTCTTGA------------------------------- 577 *************************** consensus_6790#0 GCTCTGGTTGTTGGACCAGCTATTGGAGGATTTCTTTCGCAGCCTGCAAAGAAATACCCA 714 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 AATCTTTTCTCTGAAGAATCGGTATTTGGGAGGTTTCCCTACTTTCTCCCTTGCTTCGTC 774 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 ATATCGGTACTAGCAGCAGGAGCATGTGTTGCGTGTATTTGGCTTCCGGAAACCCTGCAC 834 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 ATGCACCATGATGACAAAGAAGTCATTGATGCACTAGAGGCACAAGATGCGACTTCAGAC 894 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 TTAGGAGAAACAACTAAAGAATCAGGATCAGGGAGAATGGGCCATACAAAGAGTTTGCTG 954 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 AAGAACTGGCAGCTGATGTCAGCAATTACCCTCTACTGTGTCTTCTCTCTCCATGATACA 1014 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 GCTTATCTTGAGATATTTTCACTCTGGGCTGTGAGCAGCAGAAAATACCGGGGCCTGAGT 1074 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 TTTACATCCCAGGATGTTGGTATCGTGCTAGCTATTTCCGGTTTTGGTGTTTTGGTGTAC 1134 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 CAACTTGCGATTTATCCGCTTCTTGCTAAATATGTTGGGCCAATCAAGCCATTCCGTTAT 1194 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 GCAGCGGTCTTGTCTATACTTCTCCTTTCAACATATCCATTCATGGCTAACCTGTATGGT 1254 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 CTGGAGCTCAAAGTACTCATCAACATTGCTTCGCTTTTGAAAAATATGTTCGCTGCTACA 1314 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 ATTACTATTGCATGCAACATCCTGCAAAACACTGCAGTGACGCAAGAACAAAGAGGGGTT 1374 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 GCAAATGGAATCTCTGTCACTCTGATGTCAATCTTCAAAGCCGTAGCTCCAGCAGCAGCT 1434 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 GGAATTTTGTTTTCATGGGCGCAAAAGCACATTACTGGGTTGTTCTTACCAGGTGAGCAG 1494 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 ATCCTGTTCCTGATGCTGAACATGGTGTCAGTGATTGGGTTCATCCTGACATTCAAGCCA 1554 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 TTTTTCGCCTTGCCGGATATGCGATGATGTGTAGTTAGGTAACAAAAAGGCCAGAATTTA 1614 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 TCAGACTTCAGCCTGGATTCTAACCTGCAAGAGGAATTCATGTACTGTACCGCGTGTAAT 1674 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 GTTCAGTTGTGTAATCAGTTTGGTGGTATCTTTGATTTCTGTCTGAACTCCGAACCATTG 1734 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 GATGGTCGAGGCATATGATAAACAGCTAACGGGATCTTGTTTCATCTAAAAAAAAAAAAA 1794 consensus_6790#1 ------------------------------------------------------------ consensus_6790#0 AAAA 1798 consensus_6790#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||