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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1776 fasta sequence
[ATGGACGTCGTCACACACGCGGGCAGGCACCACCGCACCAGTACACCACCACCATCGCCCCGCCCCGCATCGCGCCCCACAGCGCCATCGCCTCGCCTGTCGCCACCAGCACACGGCAGGCACAGGCACCACCGCCCCTCTGAACCCGAGAAAACCCCTACTTGACTCGCCACGCTCCCCGCTAATCGCAACCAGACGGAGTTGTCCTTGGTGTAGTTGGCCAGCGCGCCCAGGCAGGGGGTAGAGCGAGCTCGCCGAGCTCGAGCTCGATCCATCGCCCGCCAGCCATGGTCTCCTCTCCCTCGCCTTCCTCTCCCTTCCCCGCCGCAGCAGTATCCGACGCGAGGCGGGCCGGCGGTGGCAGGACGACGGCCTCGGAGGTGGACGAGAAGTACGCGCACGTCGCGACGCCACTCCACAACCACCGCGGGGGGAGCGGGGGTGCCAAGAAGACGCCGCGGCGAGCGAAGAGCGAAGGAGGAGGCGGAGCGGACCCCGCGGCGTACGTCGCGGCGGTGTCCTGCTCTGACTGCCGCTTCAAGCAGCGGCTCCACGCGCCGGCGTCGCCTGGCCCTGGGGCGGTCATCCGCTCGCTGTTCGTGTCACTCACCCGACGATCCACGCCGCGGTCGTCGCCGTCGCCGACGTCGGCGTCCGGTGGGGACGGAGGGGAGAGCGAGCAGTGGCGCCTGGCCGCGGCCGACCTCTCGCGGCGGCTCGCGGCGGCGACGCGCACGCGGGACGAGGCGCTGGAGGAGACCACGCGGCTGAAGCACTCCCTCACCGAGCTGGAGATGAAGCTCGCGCGCCTCGAGGCCCGCGTGCTCCCCACTCCCACGGCCGCCGCCTTCCCCGTCGAGTCGTTCCTCCGGGCGGTGTCGACAGCGCGAGCCGCCGTGCGGAGCCTCACGCGGGCTCTCTCCAATCACCTCCGCAGCCCGGTGAACCCCGGCCCGAACCTCGAGAGCTTCCTGAACCGCGCGTTCCACGCCGACTTCGAGCTCGACACCGAGGGCGACGTGCACACGGC-GGACCCGGCGGGCCG-CTGCGAGGCCAACCTCGCGGCGTACCACTCCATCGCGGCGCTGACGTGGGAGGAGGTCCTCCTCCACGGTACCAAGCACTACAG-CGAGGGCCTGAGCCGGTTCTGCGACGCCAAGATG-AG-CGAGGTGGTTTCCTCCCTCGGTTGGGCGCGCGCCCGCGCCTGGCCGGAGCCGCTGCTGCAGGCGTTCTTCCTGGCCGCCAAGGGCGTGTGGGGGGTGCGCCTCCTCGCGCGGTCCGTCCACCCGCCGCTGCCCGTGGTGCGCGTCGACCGCGGCGCGCGCTTCGACTCGCGGTTCATGGAGGACGCGGCCGCCGGGCGCGCCGGGAAGCTGGAGCCGGCAAGCGTGAAGATGATGGTGGCGCCGGGGTTCCACGTGTACGTCGCCTGCGCCGGCGTGGTGAAGTGCAAGGTGGTGTGCTTCTACAGCAGCAGCAGCAGCAGCCGCACCGGCGGCCACAGAGATGGCGGGAGCATCGCCAACGGGTCTGTGGGGTTGGGGAGTAGCTGTAGCGATGTGAATGGGAGTGCTACAGACGCGGTGGATGGTTGTAATAATCAGAGCAGTAGCGTAGTTACATAGGTAAAACAAACACGACCATTTTTTTTACTGTATTTGTGTGGTTAAAACAGGACCTGCATTTTTACTTTTGTGTGAATACGGGGGACTTTGTCCCAACTTTATGTTGATTTCGTTCGTGTTTGTAGCTTTGATTTGTTGAGTAAAGACAGTT]
[+] EMBL AK106841 [ATGGACGTCGTCACACACGCGGGCAGGCACCACCGCACCAGTACACCACCACCATCGCCCCGCCCCGCATCGCGCCCCACAGCGCCATCGCCTCGCCTGTCGCCACCAGCACACGGCAGGCACAGGCACCACCGCCCCTCTGAACCCGAGAAAACCCCTACTTGACTCGCCACGCTCCCCGCTAATCGCAACCAGACGGAGTTGTCCTTGGTGTAGTTGGCCAGCGCGCCCAGGCAGGGGGTAGAGCGAGCTCGCCGAGCTCGAGCTCGATCCATCGCCCGCCAGCCATGGTCTCCTCTCCCTCGCCTTCCTCTCCCTTCCCCGCCGCAGCAGTATCCGACGCGAGGCGGGCCGGCGGTGGCAGGACGACGGCCTCGGAGGTGGACGAGAAGTACGCGCACGTCGCGACGCCACTCCACAACCACCGCGGGGGGAGCGGGGGTGCCAAGAAGACGCCGCGGCGAGCGAAGAGCGAAGGAGGAGGCGGAGCGGACCCCGCGGCGTACGTCGCGGCGGTGTCCTGCTCTGACTGCCGCTTCAAGCAGCGGCTCCACGCGCCGGCGTCGCCTGGCCCTGGGGCGGTCATCCGCTCGCTGTTCGTGTCACTCACCCGACGATCCACGCCGCGGTCGTCGCCGTCGCCGACGTCGGCGTCCGGTGGGGACGGAGGGGAGAGCGAGCAGTGGCGCCTGGCCGCGGCCGACCTCTCGCGGCGGCTCGCGGCGGCGACGCGCACGCGGGACGAGGCGCTGGAGGAGACCACGCGGCTGAAGCACTCCCTCACCGAGCTGGAGATGAAGCTCGCGCGCCTCGAGGCCCGCGTGCTCCCCACTCCCACGGCCGCCGCCTTCCCCGTCGAGTCGTTCCTCCGGGCGGTGTCGACAGCGCGAGCCGCCGTGCGGAGCCTCACGCGGGCTCTCTCCAATCACCTCCGCAGCCCGGTGAACCCCGGCCCGAACCTCGAGAGCTTCCTGAACCGCGCGTTCCACGCCGACTTCGAGCTCGACACCGAGGGCGACGTGCACACGGC GGACCCGGCGGGCCG CTGCGAGGCCAACCTCGCGGCGTACCACTCCATCGCGGCGCTGACGTGGGAGGAGGTCCTCCTCCACGGTACCAAGCACTACAG CGAGGGCCTGAGCCGGTTCTGCGACGCCAAGATG AG CGAGGTGGTTTCCTCCCTCGGTTGGGCGCGCGCCCGCGCCTGGCCGGAGCCGCTGCTGCAGGCGTTCTTCCTGGCCGCCAAGGGCGTGTGGGGGGTGCGCCTCCTCGCGCGGTCCGTCCACCCGCCGCTGCCCGTGGTGCGCGTCGACCGCGGCGCGCGCTTCGACTCGCGGTTCATGGAGGACGCGGCCGCCGGGCGCGCCGGGAAGCTGGAGCCGGCAAGCGTGAAGATGATGGTGGCGCCGGGGTTCCACGTGTACGTCGCCTGCGCCGGCGTGGTGAAGTGCAAGGTGGTGTGCTTCTACAGCAGCAGCAGCAGCAGCCGCACCGGCGGCCACAGAGATGGCGGGAGCATCGCCAACGGGTCTGTGGGGTTGGGGAGTAGCTGTAGCGATGTGAATGGGAGTGCTACAGACGCGGTGGATGGTTGTAATAATCAGAGCAGTAGCGTAGTTACATAGGTAAAACAAACACGACCATTTTTTTTACTGTATTTGTGTGGTTAAAACAGGACCTGCATTTTTACTTTTGTGTGAATACGGGGGACTTTGTCCCAACTTTATGTTGATTTCGTTCGTGTTTGTAGCTTTGATTTGTTGAGTAAAGACAGTT]
[+] EMBL BI806826 [ GGNCGACGTGCACACGNCTGGACCCGNCGGTCCGTCTGCGAGGCCAACCTCGCGGCGTACCACTCCATCGCGGCGCTGACGTGGGAGGAGGTCCTCCTCCACGGTACCAAGCACTACAGTCGAGGGCCTGAGCCGGTTCTGCGACGCCAAGATGTAGTCGAGGTGGTTTCCTCCCTCGGTTGGGCGCGCGCCCGCGCCTGGCCGGAGCCGCTGCTGCAGGCGTTCTTCCTGGCCGCCAAGGGCGTGTGGGGGGTGCGCCTCCTCGCGCGGTCCGTCCACCCGCCGCTGCCCGTGGTGCGCGTCGACCGCGGCGCGCGCTTCGACTCGCGGTT ]
[+] EMBL AU029530 [ GACGTGCACACGGC GGACCCGGCGGGCCG CTGCGAGGCCAACCTCGCGGCGTACCACTCCATCGCGGCGCTGACGTGGGAGGAGGTCCTCCTCCACGGTACCAAGCACTACAG CGAGGGCCTGAGCCGGTTCTGCGACGCCAAGATG AG CGAGGTGGTTTCCTCCCTCGGTTGGGCGCGCGCCCGCGCCTGGCCGGAGCCGCTGCTGCAGGCGTTCTTCCTGGCCGCCAAGGGCGTGTGGGGGGTGCGCCTCCTCGCGCGGTCCGTCCACCCGCCGCTGCCCGTGGTGCGCGTCGANCGCGGCGCGCGCTTCGACTCGCGGTT ]
consensusID : consensus_6791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[TGGTGTAGTNNGCCAGCGCGCCCAGGCAGGGGGTAGAGCGAGCTCGCCGAGCTCTAGCTCGATCCATCGCCCGCCAGCCATGGTCTCCTCNCCCTCGCCTTCCTCNCCCTTCCCCGCCGCAGCAGTAAGCGTCCTCTTCCTCGCTAGTTAGCATNNCCGTTTTTTCAAGGATTGCGCTTCAACAATGCGGCGTAATAATCAGGTATCCGACGCGAGGCGGGCCGGCGGTGGCAGGACGACGGCCTCGGAGGTGGACGAGAAGNACGCGCACGTC]
[+] EMBL AU164302 [TGGTGTAGTNNGCCAGCGCGCCCAGGCAGGGGGTAGAGCGAGCTCGCCGAGCTCTAGCTCGATCCATCGCCCGCCAGCCATGGTCTCCTCNCCCTCGCCTTCCTCNCCCTTCCCCGCCGCAGCAGTAAGCGTCCTCTTCCTCGCTAGTTAGCATNNCCGTTTTTTCAAGGATTGCGCTTCAACAATGCGGCGTAATAATCAGGTATCCGACGCGAGGCGGGCCGGCGGTGGCAGGACGACGGCCTCGGAGGTGGACGAGAAGNACGCGCACGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6791#0 ATGGACGTCGTCACACACGCGGGCAGGCACCACCGCACCAGTACACCACCACCATCGCCC 60
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CGCCCCGCATCGCGCCCCACAGCGCCATCGCCTCGCCTGTCGCCACCAGCACACGGCAGG 120
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CACAGGCACCACCGCCCCTCTGAACCCGAGAAAACCCCTACTTGACTCGCCACGCTCCCC 180
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GCTAATCGCAACCAGACGGAGTTGTCCTTGGTGTAGTTGGCCAGCGCGCCCAGGCAGGGG 240
consensus_6791#1 ----------------------------TGGTGTAGTNNGCCAGCGCGCCCAGGCAGGGG 32
********* *********************
consensus_6791#0 GTAGAGCGAGCTCGCCGAGCTCGAGCTCGATCCATCGCCCGCCAGCCATGGTCTCCTCTC 300
consensus_6791#1 GTAGAGCGAGCTCGCCGAGCTCTAGCTCGATCCATCGCCCGCCAGCCATGGTCTCCTCNC 92
********************** *********************************** *
consensus_6791#0 CCTCGCCTTCCTCTCCCTTCCCCGCCGCAGCAGTATCCGACGCGAGGCGGGCCGGCGGTG 360
consensus_6791#1 CCTCGCCTTCCTCNCCCTTCCCCGCCGCAGCAGTAAGCGTCCTCTTCCTCGCTAGT--TA 150
************* ********************* ** * * ** * *
consensus_6791#0 GCAGGACGACGGCCTCGGAGGTGGACGAGAAGTACGCGCACGTCGCGACGCCACTCCACA 420
consensus_6791#1 GCATNNCCGTTTTTTCAAGGATT-----GCGCTTCAACAATGCGGCGTAATAATCAGGTA 205
*** * ** * * * * * * * *** * *
consensus_6791#0 ACCACCGCGGGGGGAGCGGG-GGTGCCAAGAAGACGCCGCGGCGAGCGAAGAGCGAAGGA 479
consensus_6791#1 TCCGACGCGAGGCGGGCCGGCGGTGGCAGGACGACGGCCT------CGGAG-GTGGACGA 258
** **** ** * ** ** **** ** ** **** * ** ** * * * **
consensus_6791#0 GGAGGCGGAGCGGACCCCGCGGCGTACGTCGCGGCGGTGTCCTGCTCTGACTGCCGCTTC 539
consensus_6791#1 GAAGNACGCGCACGTC-------------------------------------------- 274
* ** * ** *
consensus_6791#0 AAGCAGCGGCTCCACGCGCCGGCGTCGCCTGGCCCTGGGGCGGTCATCCGCTCGCTGTTC 599
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GTGTCACTCACCCGACGATCCACGCCGCGGTCGTCGCCGTCGCCGACGTCGGCGTCCGGT 659
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GGGGACGGAGGGGAGAGCGAGCAGTGGCGCCTGGCCGCGGCCGACCTCTCGCGGCGGCTC 719
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GCGGCGGCGACGCGCACGCGGGACGAGGCGCTGGAGGAGACCACGCGGCTGAAGCACTCC 779
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CTCACCGAGCTGGAGATGAAGCTCGCGCGCCTCGAGGCCCGCGTGCTCCCCACTCCCACG 839
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GCCGCCGCCTTCCCCGTCGAGTCGTTCCTCCGGGCGGTGTCGACAGCGCGAGCCGCCGTG 899
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CGGAGCCTCACGCGGGCTCTCTCCAATCACCTCCGCAGCCCGGTGAACCCCGGCCCGAAC 959
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CTCGAGAGCTTCCTGAACCGCGCGTTCCACGCCGACTTCGAGCTCGACACCGAGGGCGAC 1019
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GTGCACACGGCGGACCCGGCGGGCCGCTGCGAGGCCAACCTCGCGGCGTACCACTCCATC 1079
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GCGGCGCTGACGTGGGAGGAGGTCCTCCTCCACGGTACCAAGCACTACAGCGAGGGCCTG 1139
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 AGCCGGTTCTGCGACGCCAAGATGAGCGAGGTGGTTTCCTCCCTCGGTTGGGCGCGCGCC 1199
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CGCGCCTGGCCGGAGCCGCTGCTGCAGGCGTTCTTCCTGGCCGCCAAGGGCGTGTGGGGG 1259
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GTGCGCCTCCTCGCGCGGTCCGTCCACCCGCCGCTGCCCGTGGTGCGCGTCGACCGCGGC 1319
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GCGCGCTTCGACTCGCGGTTCATGGAGGACGCGGCCGCCGGGCGCGCCGGGAAGCTGGAG 1379
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CCGGCAAGCGTGAAGATGATGGTGGCGCCGGGGTTCCACGTGTACGTCGCCTGCGCCGGC 1439
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GTGGTGAAGTGCAAGGTGGTGTGCTTCTACAGCAGCAGCAGCAGCAGCCGCACCGGCGGC 1499
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CACAGAGATGGCGGGAGCATCGCCAACGGGTCTGTGGGGTTGGGGAGTAGCTGTAGCGAT 1559
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GTGAATGGGAGTGCTACAGACGCGGTGGATGGTTGTAATAATCAGAGCAGTAGCGTAGTT 1619
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 ACATAGGTAAAACAAACACGACCATTTTTTTTACTGTATTTGTGTGGTTAAAACAGGACC 1679
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 TGCATTTTTACTTTTGTGTGAATACGGGGGACTTTGTCCCAACTTTATGTTGATTTCGTT 1739
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CGTGTTTGTAGCTTTGATTTGTTGAGTAAAGACAGTT 1776
consensus_6791#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||