Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6792 cluster # 6792       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6792#0 length = 486 sequences # 2  
consensus_6792#1 length = 396 sequences # 1  
consensus_6792#2 length = 236 sequences # 1  

consensusID : consensus_6792#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 486
fasta sequence
                              [CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGGCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCGGTACAACC-GGAGGCACAAGGTGTGCCAGACGCAC-TCCAAGGAGCCCGTNGTCCTNCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTTCGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG]

[+] EMBL AU083475             [CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGGCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCGGTACAACC GGAGGCACAAGGTGTGCCAGACGCAC TCCAAGGAGCCCGTNGTCCTNCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTTCGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG]
[+] EMBL C91611               [           CACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTNCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTNGCGCCCCGTCGGGCGNCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGANCTCAGCGAGGCTGGGCGGTACAACCNGGA GCACAAGGTGTGCCAGACGTACTTCAAAGGAGCC                                                                                                               ]


>consensus_6792#0 CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACC CTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACT AGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGC TGGCGCGTCTTCTAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGG CCGTGCCGGCGGTGGCGCCCCGTCGGGCGGCGGCGGCGGGCCGAGGTGCCAGGTGGAGAG GTGCGGCGTCGACCTCAGCGAGGCTGGGCGGTACAACCGGAGGCACAAGGTGTGCCAGAC GCACTCCAAGGAGCCCGTNGTCCTNCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAAT GCAGCCGGTTCCATGGGNTGACGGGAATTTCGNACGACGCGANGAGGAGCTGCCGGCGGC GGCTGG



consensusID : consensus_6792#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence
                              [TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGCTCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACACAGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGGTTCCTCCTCGTCCGCNGCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCGTCGGCGGCGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCGGTACAACGGAAGCACAAGGTGTGCAGANGCATTCCAAGGA]

[+] EMBL AU029544             [TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGCTCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACACAGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGGTTCCTCCTCGTCCGCNGCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCGTCGGCGGCGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCGGTACAACGGAAGCACAAGGTGTGCAGANGCATTCCAAGGA]


>consensus_6792#1 TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGC TCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACAC AGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGG TTCCTCCTCGTCCGCNGCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTCGG TGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCGTCGGCGGCGGC GGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCGGTAC AACGGAAGCACAAGGTGTGCAGANGCATTCCAAGGA



consensusID : consensus_6792#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNACCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCGTCGTCCTCCTCCTCGGCCGCGTCCATGGCCGCGCT]

[+] EMBL AU064438             [CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNACCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCGTCGTCCTCCTCCTCGGCCGCGTCCATGGCCGCGCT]


>consensus_6792#2 CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAG CTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCAC ACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNACCGCCCATGGACCGCAAGGACAAG GCCCGCAAGAACTTCTCCTCGTCGTCCTCCTCCTCGGCCGCGTCCATGGCCGCGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6792#0      ----------------CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGC 44
consensus_6792#1      TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGC 60
consensus_6792#2      -----CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGC 55
                                      ******** ***** ************************* ***

consensus_6792#0      TCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACAC 104
consensus_6792#1      TCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACAC 120
consensus_6792#2      TCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACAC 115
                      ***************** ************** *****  ********************

consensus_6792#0      AGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGG-----------GGCGGCGG 153
consensus_6792#1      AGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGG 180
consensus_6792#2      AGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNA------------------- 156
                      ********* ***** ************    *** **                      

consensus_6792#0      TTCCTCCTCGTCCGCT--GCTGTTGCT-GCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTC 210
consensus_6792#1      TTCCTCCTCGTCCGCN--GCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTC 238
consensus_6792#2      CCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCG-TCGTCCTCCTCCTC 215
                         * * * * ****   *     **  **  *  * *** *  * ** ***********

consensus_6792#0      GGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGG 270
consensus_6792#1      GGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCC-GTCGG-CGG 296
consensus_6792#2      GGCCGCGTCCATGGCCGCGCT--------------------------------------- 236
                      **  **  *   ***   *                                         

consensus_6792#0      CGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCG 330
consensus_6792#1      CGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCG 356
consensus_6792#2      ------------------------------------------------------------
                                                                                  

consensus_6792#0      GTACAACCGGAGGCACAAGGTGTGCCAGACGCACTCCAAGGAGCCCGTNGTCCTNCGTCG 390
consensus_6792#1      GTACAAC-GGAAGCACAAGGTGTGC-AGANGCATTCCAAGGA------------------ 396
consensus_6792#2      ------------------------------------------------------------
                                                                                  

consensus_6792#0      CTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTT 450
consensus_6792#1      ------------------------------------------------------------
consensus_6792#2      ------------------------------------------------------------
                                                                                  

consensus_6792#0      CGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG 486
consensus_6792#1      ------------------------------------
consensus_6792#2      ------------------------------------
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)