These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence [CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGGCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCGGTACAACC-GGAGGCACAAGGTGTGCCAGACGCAC-TCCAAGGAGCCCGTNGTCCTNCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTTCGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG] [+] EMBL AU083475 [CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGGCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCGGTACAACC GGAGGCACAAGGTGTGCCAGACGCAC TCCAAGGAGCCCGTNGTCCTNCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTTCGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG] [+] EMBL C91611 [ CACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTNCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTNGCGCCCCGTCGGGCGNCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGANCTCAGCGAGGCTGGGCGGTACAACCNGGA GCACAAGGTGTGCCAGACGTACTTCAAAGGAGCC ] consensusID : consensus_6792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGCTCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACACAGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGGTTCCTCCTCGTCCGCNGCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCGTCGGCGGCGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCGGTACAACGGAAGCACAAGGTGTGCAGANGCATTCCAAGGA] [+] EMBL AU029544 [TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGCTCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACACAGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGGTTCCTCCTCGTCCGCNGCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCGTCGGCGGCGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCGGTACAACGGAAGCACAAGGTGTGCAGANGCATTCCAAGGA] consensusID : consensus_6792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNACCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCGTCGTCCTCCTCCTCGGCCGCGTCCATGGCCGCGCT] [+] EMBL AU064438 [CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNACCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCGTCGTCCTCCTCCTCGGCCGCGTCCATGGCCGCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6792#0 ----------------CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGC 44 consensus_6792#1 TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGC 60 consensus_6792#2 -----CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGC 55 ******** ***** ************************* *** consensus_6792#0 TCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACAC 104 consensus_6792#1 TCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACAC 120 consensus_6792#2 TCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACAC 115 ***************** ************** ***** ******************** consensus_6792#0 AGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGG-----------GGCGGCGG 153 consensus_6792#1 AGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGG 180 consensus_6792#2 AGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNA------------------- 156 ********* ***** ************ *** ** consensus_6792#0 TTCCTCCTCGTCCGCT--GCTGTTGCT-GCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTC 210 consensus_6792#1 TTCCTCCTCGTCCGCN--GCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTC 238 consensus_6792#2 CCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCG-TCGTCCTCCTCCTC 215 * * * * **** * ** ** * * *** * * ** *********** consensus_6792#0 GGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGG 270 consensus_6792#1 GGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCC-GTCGG-CGG 296 consensus_6792#2 GGCCGCGTCCATGGCCGCGCT--------------------------------------- 236 ** ** * *** * consensus_6792#0 CGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCG 330 consensus_6792#1 CGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCG 356 consensus_6792#2 ------------------------------------------------------------ consensus_6792#0 GTACAACCGGAGGCACAAGGTGTGCCAGACGCACTCCAAGGAGCCCGTNGTCCTNCGTCG 390 consensus_6792#1 GTACAAC-GGAAGCACAAGGTGTGC-AGANGCATTCCAAGGA------------------ 396 consensus_6792#2 ------------------------------------------------------------ consensus_6792#0 CTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTT 450 consensus_6792#1 ------------------------------------------------------------ consensus_6792#2 ------------------------------------------------------------ consensus_6792#0 CGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG 486 consensus_6792#1 ------------------------------------ consensus_6792#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||