cluster # 6796

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Oryza sativa
cluster # 6796 cluster # 6796 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6796#0 length = 686 sequences # 1
consensus_6796#1 length = 673 sequences # 1

consensus_6796#2 length = 530 sequences # 1
consensus_6796#3 length = 319 sequences # 1

consensusID : consensus_6796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGGCCAATCTTGCATCCTTGCACTACAAAAGGGGGGCTTGAACGCTGATATTTAGCTAAAGGGTTGCAACCTAATCTGACAATACTACAGGGTATCATTTCAATTTTTCATCGCAGCCAACAACCTGACTTGAGGGGCTTGGAACAGGCTAAAAACGCCCTTCCCAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAACCAATTGGAGCTTCATCCTTCCTGCAAATTAGGCCCATTATCGGCTCCATATACCCCCATGTTGTTTTTGCCCTTGCAAACCCCCCTGGGGTCCCTTTGAACCCTCGATAAACTCTGCAGCAACATCCCCACCTTGATAGGAAGCAGGCACAGCCCTAAAACCCAAAGGGCCCACCATGGCCACCTACTCTAAAAACGGGACCAAACCCCCCCGCTGGGGGGCACCAGTTTCAAGGTTCCAAGGTTTGATTTAAACACCACTTCCCCGGCTCGCCGCAACACTCCAGAGCCGGGCCCCTGATCCAAACAATCCCGGCGCGATTCCCATCCCATTTGGACAACACCCCCACAGGGTCCCCACCCCGCAACTCAACCTCCAGGCCCCGGACCCCTGCCCGGCGAGGAACCCCCTGCGCTCGGCCCCAACAAGCTTAACGA]

[+] EMBL CA759014             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGGCCAATCTTGCATCCTTGCACTACAAAAGGGGGGCTTGAACGCTGATATTTAGCTAAAGGGTTGCAACCTAATCTGACAATACTACAGGGTATCATTTCAATTTTTCATCGCAGCCAACAACCTGACTTGAGGGGCTTGGAACAGGCTAAAAACGCCCTTCCCAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAACCAATTGGAGCTTCATCCTTCCTGCAAATTAGGCCCATTATCGGCTCCATATACCCCCATGTTGTTTTTGCCCTTGCAAACCCCCCTGGGGTCCCTTTGAACCCTCGATAAACTCTGCAGCAACATCCCCACCTTGATAGGAAGCAGGCACAGCCCTAAAACCCAAAGGGCCCACCATGGCCACCTACTCTAAAAACGGGACCAAACCCCCCCGCTGGGGGGCACCAGTTTCAAGGTTCCAAGGTTTGATTTAAACACCACTTCCCCGGCTCGCCGCAACACTCCAGAGCCGGGCCCCTGATCCAAACAATCCCGGCGCGATTCCCATCCCATTTGGACAACACCCCCACAGGGTCCCCACCCCGCAACTCAACCTCCAGGCCCCGGACCCCTGCCCGGCGAGGAACCCCCTGCGCTCGGCCCCAACAAGCTTAACGA]




>consensus_6796#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGGCCAATCTTGC
ATCCTTGCACTACAAAAGGGGGGCTTGAACGCTGATATTTAGCTAAAGGGTTGCAACCTA
ATCTGACAATACTACAGGGTATCATTTCAATTTTTCATCGCAGCCAACAACCTGACTTGA
GGGGCTTGGAACAGGCTAAAAACGCCCTTCCCAAAAAAAAATAAAGGCAAAAAACTAGGA
TAGATGAACCAATTGGAGCTTCATCCTTCCTGCAAATTAGGCCCATTATCGGCTCCATAT
ACCCCCATGTTGTTTTTGCCCTTGCAAACCCCCCTGGGGTCCCTTTGAACCCTCGATAAA
CTCTGCAGCAACATCCCCACCTTGATAGGAAGCAGGCACAGCCCTAAAACCCAAAGGGCC
CACCATGGCCACCTACTCTAAAAACGGGACCAAACCCCCCCGCTGGGGGGCACCAGTTTC
AAGGTTCCAAGGTTTGATTTAAACACCACTTCCCCGGCTCGCCGCAACACTCCAGAGCCG
GGCCCCTGATCCAAACAATCCCGGCGCGATTCCCATCCCATTTGGACAACACCCCCACAG
GGTCCCCACCCCGCAACTCAACCTCCAGGCCCCGGACCCCTGCCCGGCGAGGAACCCCCT
GCGCTCGGCCCCAACAAGCTTAACGA

consensusID : consensus_6796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [TTTTTTTTTTTTGAAAATATTCAGCGATGTTCTTGAAAAAAAAGGCGGTCAATCTAAAATGTTCAATCTTGCATCCTTGCACTACAAAATGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCAAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAAATTAGGTCCATTATCGTCTCCATATACCCCCATGTTGTTTTTGCTCTTGCATACCCCTCTGGTGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAAAAGGTCTCACCATGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAACACAATTTTCTGGCTGTAAGCAAGATTCAAGAGCGTGGCCACTGATGTAAATAACTTGTGCAGGATTTCTATTCAACTTTGACAAATCCCGATAATGTTTACCATCTTGATACTTAGTTGCAGGTCTTGACAACCTGCCTGTGATGAAACCCTTTGT]

[+] EMBL CA763363             [TTTTTTTTTTTTGAAAATATTCAGCGATGTTCTTGAAAAAAAAGGCGGTCAATCTAAAATGTTCAATCTTGCATCCTTGCACTACAAAATGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCAAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAAATTAGGTCCATTATCGTCTCCATATACCCCCATGTTGTTTTTGCTCTTGCATACCCCTCTGGTGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAAAAGGTCTCACCATGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAACACAATTTTCTGGCTGTAAGCAAGATTCAAGAGCGTGGCCACTGATGTAAATAACTTGTGCAGGATTTCTATTCAACTTTGACAAATCCCGATAATGTTTACCATCTTGATACTTAGTTGCAGGTCTTGACAACCTGCCTGTGATGAAACCCTTTGT]




>consensus_6796#1
TTTTTTTTTTTTGAAAATATTCAGCGATGTTCTTGAAAAAAAAGGCGGTCAATCTAAAAT
GTTCAATCTTGCATCCTTGCACTACAAAATGGTGGTTTGAACGTTGATATTTAGCTAAAT
GTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAAC
AACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCAAAAAAAAAAATAAAGG
CAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAAATTAGGTCCATT
ATCGTCTCCATATACCCCCATGTTGTTTTTGCTCTTGCATACCCCTCTGGTGTTCCTTTG
AACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAA
TATCAAAAGGTCTCACCATGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGG
TGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAACACAATTTTCTGGCTGTAAGCAAG
ATTCAAGAGCGTGGCCACTGATGTAAATAACTTGTGCAGGATTTCTATTCAACTTTGACA
AATCCCGATAATGTTTACCATCTTGATACTTAGTTGCAGGTCTTGACAACCTGCCTGTGA
TGAAACCCTTTGT

consensusID : consensus_6796#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [TTTTTTTTTTTTTTGTTTTTTTTTTGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCGAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAGATTAGGTCCATTATTGTCTCCATATACGCCCATGTTGTTTTTGCTCTTGCATACGCCTCTGGNGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAGAAGGNCTCACCATGGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAANACAATTTCTGGGCTGTAAGCAAGATTCAAGAGCGTGGNTGCTGATGTAAATAACTTGTGCAGGATTCTATTCAANTT]

[-] EMBL AU029582             [TTTTTTTTTTTTTTGTTTTTTTTTTGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCGAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAGATTAGGTCCATTATTGTCTCCATATACGCCCATGTTGTTTTTGCTCTTGCATACGCCTCTGGNGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAGAAGGNCTCACCATGGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAANACAATTTCTGGGCTGTAAGCAAGATTCAAGAGCGTGGNTGCTGATGTAAATAACTTGTGCAGGATTCTATTCAANTT]




>consensus_6796#2
TTTTTTTTTTTTTTGTTTTTTTTTTGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTG
CAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTT
GACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCGAAAAAAAAAATAAAGGCAAAA
AACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAGATTAGGTCCATTATTGT
CTCCATATACGCCCATGTTGTTTTTGCTCTTGCATACGCCTCTGGNGTTCCTTTGAACGC
TCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCA
GAAGGNCTCACCATGGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTC
ATCAGTTTCAAGTTTCCAAGGTTTGATTTGAANACAATTTCTGGGCTGTAAGCAAGATTC
AAGAGCGTGGNTGCTGATGTAAATAACTTGTGCAGGATTCTATTCAANTT

consensusID : consensus_6796#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TTTTTTCACACTTCAGAAGATGCTATTATCAGCAAATATGCAAGAAAGCAAAATTTCAGCGCATGCTGAGAGCTACTGGCATGCAACTAATTTAGTAGTAGCACGCACAGCACTGAAAATATTCAGCGATGTTCTTGAAGAAAAAGGCGGTCAATCTAAGATGTTCAATCTTGCATCCTTGCACTACAAAAGGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGT]

[-] EMBL BM421610             [TTTTTTCACACTTCAGAAGATGCTATTATCAGCAAATATGCAAGAAAGCAAAATTTCAGCGCATGCTGAGAGCTACTGGCATGCAACTAATTTAGTAGTAGCACGCACAGCACTGAAAATATTCAGCGATGTTCTTGAAGAAAAAGGCGGTCAATCTAAGATGTTCAATCTTGCATCCTTGCACTACAAAAGGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGT]




>consensus_6796#3
TTTTTTCACACTTCAGAAGATGCTATTATCAGCAAATATGCAAGAAAGCAAAATTTCAGC
GCATGCTGAGAGCTACTGGCATGCAACTAATTTAGTAGTAGCACGCACAGCACTGAAAAT
ATTCAGCGATGTTCTTGAAGAAAAAGGCGGTCAATCTAAGATGTTCAATCTTGCATCCTT
GCACTACAAAAGGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGA
CAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCT
TGGAACAGGCTAAATACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6796#0      -TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------TTTTTTTTTAAAAAG 48
consensus_6796#2      ------------------------------------------------------------
consensus_6796#1      TTTTTTTTTTTTGAAAATATTCAGCGATGTTCTTGAAAAAAAAGGCGGTCAATCTAAAAT 60
consensus_6796#3      ------------------------------------------------------------
                                                                                  

consensus_6796#0      GGCCAATCTTGCATCCTTGCACTACAAAAGGGGGGCTTGAACGCTGATATTTAGCTAAAG 108
consensus_6796#2      -----TTTTTTTTTTTTTTGTTTTTTTTTTGGTGGTTTGAACGTTGATATTTAGCTAAAT 55
consensus_6796#1      GTTCAATCTTGCATCCTTGCACTACAAAATGGTGGTTTGAACGTTGATATTTAGCTAAAT 120
consensus_6796#3      ------------------------TTTTTTCACACTTCAGAAGATGCTATT-ATCAGCAA 35
                                                          *   * * ** **** * *   * 

consensus_6796#0      GGTTGCAACCTAATCTGACAATACTACAGGGTATCATTTCAATTTTTCATCGCAGCCAAC 168
consensus_6796#2      GTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAAC 115
consensus_6796#1      GTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAAC 180
consensus_6796#3      ATATGCAAGAAAG-----CAAAATTTCAGCGCATGCTGAGAGCTAC---TGGCATGCAAC 87
                         *****   *      *** * * **    **  *   *  *     * ***  ****

consensus_6796#0      AACCTGACTTGAGGGGCTTGGAACAGGCTAAAAACGCCCTTCCCAAAAAAAAA-TAAAGG 227
consensus_6796#2      AACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCGAAAAAAAAAATAAAGG 175
consensus_6796#1      AACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCAAAAAAAAAAATAAAGG 240
consensus_6796#3      TAATTTAGTAGTAGCACGCACAGCA--CTGAAAATATTC-----AGCGATGTTCTTGAAG 140
                       *  * * * *  *  *    * **  ** ** *    *     *   *     *  * *

consensus_6796#0      CAAAAAACTAGGATAGATGAACCAATTGGAGCTT-CATCCTTCCTGCAAATTAGGCCCAT 286
consensus_6796#2      CAAAAAACTAGGATAGATGAATCAATTGGAGCTT-CATCCTTCCTGCAGATTAGGTCCAT 234
consensus_6796#1      CAAAAAACTAGGATAGATGAATCAATTGGAGCTT-CATCCTTCCTGCAAATTAGGTCCAT 299
consensus_6796#3      AAAAAGGC--GGTCAATCTAAGATGTTCAATCTTGCATCCTTGCACTACAAAAGGGTGGT 198
                       ****  *  **  *    **    **  * *** ******* *   * *  ***    *

consensus_6796#0      TATCGGCTCCATATACCCCCATGTTGTTTTTGCCCTTGCAAACCCCCCTGGGGTCCCTTT 346
consensus_6796#2      TATTGTCTCCATATACGCCCATGTTGTTTTTGCTCTTGCATACGCCTCTGGNGTTCCTTT 294
consensus_6796#1      TATCGTCTCCATATACCCCCATGTTGTTTTTGCTCTTGCATACCCCTCTGGTGTTCCTTT 359
consensus_6796#3      TTGAACGTTGATAT---------TTAGCTAAATGTTTGCAACCTAATCTGACAATACTAC 249
                      *      *  ****         **   *      *****  *    ***      **  

consensus_6796#0      GAACCCTCGATA-AACTCTGCAGCAACATCCCCACCTTGATAGGAAGCA---GGCACAGC 402
consensus_6796#2      GAACGCTCGATA-AACTCTGCAGCAACATCACGACCTTGATAGGAAGCA---AGCACAGT 350
consensus_6796#1      GAACGCTCGATA-AACTCTGCAGCAACATCACGACCTTGATAGGAAGCA---AGCACAGT 415
consensus_6796#3      ATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGG 309
                            **  *  ** * * ** *    **   * *****   ** *      * **** 

consensus_6796#0      CCTAAAACCCAAAGGGCCCACCATGGCCACC-TACTCTAAAAACGGGACCAAACCCCCCC 461
consensus_6796#2      CCTAATATCAGAAGGNCTCACCATGGGCAACATACTCTAGAAATGGGATCAGATCCAGCA 410
consensus_6796#1      CCTAATATCAAAAGGTCTCACCATGG-CAACATACTCTAGAAATGGGATCAGATCCAGCA 474
consensus_6796#3      CTAAATACGT-------------------------------------------------- 319
                      *  ** *                                                     

consensus_6796#0      GCTGGGGGGCACCAGTTTCAAGGTTCCAAGGTTTGATTTAAACACCACTTCCCCGGCTCG 521
consensus_6796#2      GCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAANACAATTTCTG-GGCTGT 469
consensus_6796#1      GCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAACACAATTTTCT-GGCTGT 533
consensus_6796#3      ------------------------------------------------------------
                                                                                  

consensus_6796#0      CCGCAACACTCCAGAGCCGGGCCCCTGATCCAAACAATCCCGGCGCGATTCCCATCCCAT 581
consensus_6796#2      AAGCAAGATTCAAGAGCGTGGNTGCTGATGTAAATAACTTGTGCAGGATTCT-ATTCAAN 528
consensus_6796#1      AAGCAAGATTCAAGAGCGTGGCCACTGATGTAAATAACTTGTGCAGGATTTCTATTCAAC 593
consensus_6796#3      ------------------------------------------------------------
                                                                                  

consensus_6796#0      TTGGACAACACCCCCACAGGGTCCCCACCCCGCAACTCAACCTCCAGGCCCCGGACCCCT 641
consensus_6796#2      TT---------------------------------------------------------- 530
consensus_6796#1      TTTGACAAATCCCGATAATGTTTACCATCTTGATACTTAGT-TGCAGGTCTTGACAACCT 652
consensus_6796#3      ------------------------------------------------------------
                                                                                  

consensus_6796#0      GCCCGGCGAGGAACCCCCTGCGCTCGGCCCCAACAAGCTTAACGA 686
consensus_6796#2      ---------------------------------------------
consensus_6796#1      GCCTGTGATGAAACCCTTTGT------------------------ 673
consensus_6796#3      ---------------------------------------------