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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1278 fasta sequence
[TTGCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACTGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCCGTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCGGCGGCGCAAGTGATGCTGCTGCCGCGACCACAGCGGCGCGGTCGCCGGACAACAACGTGAGGGTGCTCATCGGCATCCAGACGCTGCCGAGCAAGTACGAGCGGCGCAACCTGCTGCGGACCATCTACTCGCTCCAGGCCAGGGAGCAGCCGTCCCTCGCCGGCAGCGTCGACGTCCGGTTCGTCTTCTGCAACGTGACGTCCCCCGTCGACGCGGTGCTGGTGTCGCTGGAGGCCATCCGCCACGGCGACATCATCGTCCTCGACTGCGCCGAGAACATGGACAACGGCAAGACGTACACCTTCTTCTCCACCGTGGCGCGCGCCTTCAACTCCAGCGACGGCGAGGGCTCGGGCTCGGGCTCGCCGCCGCCGCCGCGGTACGACTACGTGATGAAGGCCGACGACGACACGTACCTCCGGCTGGCGGCGCTGGTGGAGTCCCTGCGCGGCGCGGCGCGGCGCGACGCGTACTACGGACTCCAGATGCCGTGCGACCGCGAGAACTTCTACCCGTTCCCGCCGTTCATGTCCGGGATGGGGTACGCGCTGTCGTGGGACCTCGTCCAGTGGGTGGCGACGGCGGAGGAGAGCCGGCGCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGGCCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGAGCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCGCCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACCTCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTCCCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGATTGCCCCTGTGTTCCTAGCTGATTTGTTCCAAATTTCTCGAGTTTAAAATAGATATGAAATGGATATTTGTTCGTTAAAAA]
[+] EMBL AK064636 [TTGCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACTGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCCGTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCGGCGGCGCAAGTGATGCTGCTGCCGCGACCACAGCGGCGCGGTCGCCGGACAACAACGTGAGGGTGCTCATCGGCATCCAGACGCTGCCGAGCAAGTACGAGCGGCGCAACCTGCTGCGGACCATCTACTCGCTCCAGGCCAGGGAGCAGCCGTCCCTCGCCGGCAGCGTCGACGTCCGGTTCGTCTTCTGCAACGTGACGTCCCCCGTCGACGCGGTGCTGGTGTCGCTGGAGGCCATCCGCCACGGCGACATCATCGTCCTCGACTGCGCCGAGAACATGGACAACGGCAAGACGTACACCTTCTTCTCCACCGTGGCGCGCGCCTTCAACTCCAGCGACGGCGAGGGCTCGGGCTCGGGCTCGCCGCCGCCGCCGCGGTACGACTACGTGATGAAGGCCGACGACGACACGTACCTCCGGCTGGCGGCGCTGGTGGAGTCCCTGCGCGGCGCGGCGCGGCGCGACGCGTACTACGGACTCCAGATGCCGTGCGACCGCGAGAACTTCTACCCGTTCCCGCCGTTCATGTCCGGGATGGGGTACGCGCTGTCGTGGGACCTCGTCCAGTGGGTGGCGACGGCGGAGGAGAGCCGGCGCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGGCCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGAGCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCGCCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACCTCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTCCCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGATTGCCC ]
[+] EMBL OSS1984A [ GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCCGTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCGGCGGCGCAAGTAATGCTGCTGCCGCGACCACGGCGGCGCGGTCGCGGNACAACGACGTGAGGGTGCTCATCGGCATCCAGACGCTGCCGAGCAA ]
[+] EMBL AU174242 [ GCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGGCCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGAGCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCGCCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACCTCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTCCCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGATTGCCCCTGTGTTCCTAGCTGATTTGTTCCAAATTTCTCGAGTTTAAAATAGATATGAAATGGATATTTGTTCGTTAAAAA]
consensusID : consensus_6797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCNNCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCNGGNGGCTGCGGCCGTCCTGGCACGGACGCCGCCACNNANGCCGTTGCTGCCTCGNCGGTCAAGAATNTNAGCGGCGGCGTAAGTAATGCTGNTGNCGCGACCACGGNGTCGNGGGTTNGCGGGACAACGANGTGAGGGGTGCTCATCGGCATNCAGACGTTGCCGAGCA]
[+] EMBL OSS2259A [GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCNNCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCNGGNGGCTGCGGCCGTCCTGGCACGGACGCCGCCACNNANGCCGTTGCTGCCTCGNCGGTCAAGAATNTNAGCGGCGGCGTAAGTAATGCTGNTGNCGCGACCACGGNGTCGNGGGTTNGCGGGACAACGANGTGAGGGGTGCTCATCGGCATNCAGACGTTGCCGAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6797#0 TTGCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTC 60
consensus_6797#1 --GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTC 58
**********************************************************
consensus_6797#0 CCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACTG 120
consensus_6797#1 CCGTCTCNNCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCG 118
******* ************************************************* *
consensus_6797#0 TCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCC 180
consensus_6797#1 TCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCNGGNGGCTGCGGCC 178
********************************************** ** **********
consensus_6797#0 GTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCG 240
consensus_6797#1 GTCCTGGCACGGACGCCGCCACNNANGCCGTTGCTGCCTCGNCGGTCAAGAATNTNAGCG 238
********************** *************** *********** * ****
consensus_6797#0 GCGGCGCAAGTGATGCTGCTGCCGCGACCACAGCGGCGCGG--TCGCCGGACAACAACGT 298
consensus_6797#1 GCGGCGTAAGTAATGCTGNTGNCGCGACCACGGNGTCGNGGGTTNGCGGGACAACGANGT 298
****** **** ****** ** ********* * * ** ** * ** ******* * **
consensus_6797#0 GAGGG-TGCTCATCGGCATCCAGACGCTGCCGAGCAAGTACGAGCGGCGCAACCTGCTGC 357
consensus_6797#1 GAGGGGTGCTCATCGGCATNCAGACGTTGCCGAGCA------------------------ 334
***** ************* ****** *********
consensus_6797#0 GGACCATCTACTCGCTCCAGGCCAGGGAGCAGCCGTCCCTCGCCGGCAGCGTCGACGTCC 417
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 GGTTCGTCTTCTGCAACGTGACGTCCCCCGTCGACGCGGTGCTGGTGTCGCTGGAGGCCA 477
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 TCCGCCACGGCGACATCATCGTCCTCGACTGCGCCGAGAACATGGACAACGGCAAGACGT 537
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 ACACCTTCTTCTCCACCGTGGCGCGCGCCTTCAACTCCAGCGACGGCGAGGGCTCGGGCT 597
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 CGGGCTCGCCGCCGCCGCCGCGGTACGACTACGTGATGAAGGCCGACGACGACACGTACC 657
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 TCCGGCTGGCGGCGCTGGTGGAGTCCCTGCGCGGCGCGGCGCGGCGCGACGCGTACTACG 717
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 GACTCCAGATGCCGTGCGACCGCGAGAACTTCTACCCGTTCCCGCCGTTCATGTCCGGGA 777
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 TGGGGTACGCGCTGTCGTGGGACCTCGTCCAGTGGGTGGCGACGGCGGAGGAGAGCCGGC 837
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 GCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGG 897
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 CCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGA 957
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 GCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCG 1017
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 CCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACC 1077
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 TCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTC 1137
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 CCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGA 1197
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 TTGCCCCTGTGTTCCTAGCTGATTTGTTCCAAATTTCTCGAGTTTAAAATAGATATGAAA 1257
consensus_6797#1 ------------------------------------------------------------
consensus_6797#0 TGGATATTTGTTCGTTAAAAA 1278
consensus_6797#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||