These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1577 fasta sequence [TGTTCCTTCCCATGAAGAGATTATTGAGGCTAAGCTAAGAGATAAATCATATCTTAGATCGTTGTCCTTAAACTGGTCTGAGACTACTAATGTATTGAGCCACATTCTCATCTTGAAAATCTGGAAATATCAGGGTATAATGGTCTTCGATTTCCAACTTGGCTAAGCCATCCATGCCTGATAAATATGGTGTCACTAGAGCTGAGAAAATGTAGAAGTTGGGCATACCTCCCAGCTCTTGGAAATTTACAGCGGCTCAAGCATCTTGAATTGCACAAACTTGCAGAATTGAAACGGATCGACCAATCATCAGGCAATTCCCTGCCCCCAAATCTGAAAACTCTAGTGGTGGAAGGTTGCAAAAAATTAGGGGAACTGCCACTTCTACCTTCAAGTTTGACACGGTTAGAAGTAAATGATGTTGGATTGACCACCCTTCCAAGGATATATGACCATCATGTTAACAACATGGATTTTGAAAGCAAGGAAACCAAGCTAATCTCAGTTATCATCAGCAACTGCTCAAATTTAATTTCTCTGGAGGAAAGCTTTCTACTGCAGGAGCACCATATCCGAAGTCTTCGTATCCTAAGGATTGTTGATTGTGAAAAGTTGATCCGAGCTCCTTTGTTATTTTCAGAAATGGATAATCTTGCAGAATTTCATATTGGTAAGTGTTACCGGTTGAGAGTGAGGGAAAACGATGATAATGTACTACTCCCCCGCACACTTAAGGAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCACTGCTGGAGTCACTGGTTGGTCTGACTAATCTTACGTCATTGAGTCTGCGTAACTGCGGCAGGGTGAGGTCCCTTCCACAGTCAGACGTGTTCCGGAGTCTCAGGTCACTGCGAGAGATGGCTGTGGCTGATTGTACTAGCTTGGCATCCTTGGGTGGGCTTGGAGCCCTTTCATATCTCAATTGGCTGGAAATCACAGAGTGCCCGAGGCTTCAGGGGTATGCCAGATATGATGAAGTGGATGAAGATCCGGTGTTGGAGTTCTCCCTGGAGGTCTACTCTCTCTGGATACATACCCCCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACACAACACAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGGTTNCTTGAGTTTNCCATTCTGNCATCTCCTCTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGNTGGCACGCTGGAAAAGGAAAGATAGTTCTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCNTACTACAATTTCGGGAAANCAGCGGACAAANTTTTAGCTGGGATTCTTCAAAANACAAGACAANAATAGGGNTGGGAGAAACGTNCAACAGNTTTAGGGNACCAGCTGACCAACTTTTAGCCGGGATTTTCAAAGGGNAGTTAGAATTGNTT] [+] EMBL CB645281 [TGTTCCTTCCCATGAAGAGATTATTGAGGCTAAGCTAAGAGATAAATCATATCTTAGATCGTTGTCCTTAAACTGGTCTGAGACTACTAATGTATTGAGCCACATTCTCATCTTGAAAATCTGGAAATATCAGGGTATAATGGTCTTCGATTTCCAACTTGGCTAAGCCATCCATGCCTGATAAATATGGTGTCACTAGAGCTGAGAAAATGTAGAAGTTGGGCATACCTCCCAGCTCTTGGAAATTTACAGCGGCTCAAGCATCTTGAATTGCACAAACTTGCAGAATTGAAACGGATCGACCAATCATCAGGCAATTCCCTGCCCCCAAATCTGAAAACTCTAGTGGTGGAAGGTTGCAAAAAATTAGGGGAACTGCCACTTCTACCTTCAAGTTTGACACGGTTAGAAGTAAATGATGTTGGATTGACCACCCTTCCAAGGATATATGACCATCATGTTAACAACATGGATTTTGAAAGCAAGGAAACCAAGCTAATCTCAGTTATCATCAGCAACTGCTCAAATTTAATTTCTCTGGAGGAAAGCTTTCTACTGCAGGAGCACCATATCCGAAGTCTTCGTATCCTAAGGATTGTTGATTGTGAAAAGTTGATCCGAGCTCCTTTGTTATTTTCAGAAATGGATAATCTTGCAGAATTTCATATTGGTAAGTGTTACCGGTTGAGAGTGAGGGAAAACGATGATAATGTACTACTCCCCCGCACACTTAAGGAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCAC ] [+] EMBL CA763862 [ ATGATAATGTACTACTCCCCCGCACACTTAAGAAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCACTGCTGGAGTCACTGGTTGGTCTGACTAATCTTACGTCATTGAGTCTGCGTAACTGCGGCAGGGTGAGGTCCCTTCCACAGTCAGACGTGTTCCGGAGTCTCAGGTCACTGCGAGAGATGGCTGTGGCTGATTGTACTAGCTTGGCATCCTTGGGTGGGCTTGGAGCCCTTTCATATCTCAATTGGCTGGAAATCACAGAGTGCCCGAGGCTTCAGGGGTATGCCAGATATGATGAAGTGGATGAAGATCCGGTGTTGGAGTTCTCCCTGGAGGTCTACTCTCTCTGGATACATACCCCCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACACAACACAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGGTTNCTTGAGTTTNCCATTCTGNCATCTCCTCTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGNTGGCACGCTGGAAAAGGAAAGATAGTTCTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCNTACTACAATTTCGGGAAANCAGCGGACAAANTTTTAGCTGGGATTCTTCAAAANACAAGACAANAATAGGGNTGGGAGAAACGTNCAACAGNTTTAGGGNACCAGCTGACCAACTTTTAGCCGGGATTTTCAAAGGGNAGTTAGAATTGNTT] consensusID : consensus_6805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [GTTCAAGCGAGGATTATTTTCTCTTAAAGAGAGTGAATACCAAAACCTCCATATAAAACCACATCATAACAATTCTTCAAAAAAAGAAAAACACTCCCATGGGTCTAATATGATATTAGACAACCTCATAAAATTAAGATAAAAATAAAATTCATCGATCAGATGAAACTCACTAATATTGAAAAAAAAGAAGCGAAATTAACAATGTTCACACATATCAACTAGAGCTCTAAAATAAGAGATCGATCAGCTTTTCCTGGATGACTTTCAGTTCAATACTGGTTGGCCATTTTACTTTGAGAGGCTACTACTGAACAATCAAGCTTGTTTACCGACAAGGAACGGCATGAACGGATGAACATGTCATTGCATTTTTTTGTGTGTGCATTTCCATCCTTTAATTCCACATGTGATTCACATTCGTGAGACTGAGAAACAAGACACTGGCCTCGAATCCTTGCAGATATTTCTATAAAATATGTGGAACTGACTGTAGTTCTGAAGAATCCATTGGCACAGTTAAGGTATTCACAGCCAGTCACACTAATAAAACTGTCTTCTAACTGGGTCTTGCACACAGAAGGGGCTTACATCTTGGACTTCACTAATCTATTGCTTATCTTCTCTTTTGAAGAATCACGGGTATAAAGTTGGTCAGCTGGTTCCCTGAAACTGCTGTACGTGTCTCACATACCTATTTCTTGGCTTGTCTTCTGAAAAATCACAGC] [+] EMBL CB627712 [GTTCAAGCGAGGATTATTTTCTCTTAAAGAGAGTGAATACCAAAACCTCCATATAAAACCACATCATAACAATTCTTCAAAAAAAGAAAAACACTCCCATGGGTCTAATATGATATTAGACAACCTCATAAAATTAAGATAAAAATAAAATTCATCGATCAGATGAAACTCACTAATATTGAAAAAAAAGAAGCGAAATTAACAATGTTCACACATATCAACTAGAGCTCTAAAATAAGAGATCGATCAGCTTTTCCTGGATGACTTTCAGTTCAATACTGGTTGGCCATTTTACTTTGAGAGGCTACTACTGAACAATCAAGCTTGTTTACCGACAAGGAACGGCATGAACGGATGAACATGTCATTGCATTTTTTTGTGTGTGCATTTCCATCCTTTAATTCCACATGTGATTCACATTCGTGAGACTGAGAAACAAGACACTGGCCTCGAATCCTTGCAGATATTTCTATAAAATATGTGGAACTGACTGTAGTTCTGAAGAATCCATTGGCACAGTTAAGGTATTCACAGCCAGTCACACTAATAAAACTGTCTTCTAACTGGGTCTTGCACACAGAAGGGGCTTACATCTTGGACTTCACTAATCTATTGCTTATCTTCTCTTTTGAAGAATCACGGGTATAAAGTTGGTCAGCTGGTTCCCTGAAACTGCTGTACGTGTCTCACATACCTATTTCTTGGCTTGTCTTCTGAAAAATCACAGC] consensusID : consensus_6805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [CCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACCCTCCCCAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGTTTCCTTGAGTTTCCCATTTTGCCATCTTTTTTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGTTGGCCCGCTGGAAAAGGAAAGATAGTTTTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCATACTACAATTTCGGGAAACCAGCGGCCAAATTTTATAGCTGTGATTTTTCAGAAGACAAGACAAGAAATAGGTATGTGAGACACGTACTACAGTTTCAGGGAACCAGCTGACCAACTTTATAGCCGTGATTTTACAAAAGAGAAGATAAGAAATAGATTAGTGAAGTCCAAGATGTAAGCCCCTACTGTGTGCAAGACCCAGTTAGAAGACAGTTTTATTAGTGTGACTGGCTGTGAATCCCTTAACTGTGCCAATGGATTTTTCAGAACTCCAGTCGGTTCCACATATTTTATAGAAATATTTGCAAGGATTGGAGGCCAGTGTCTTGTTTTTCAGTCTCACGCTTGAGGTCCCA] [-] EMBL CB645282 [CCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACCCTCCCCAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGTTTCCTTGAGTTTCCCATTTTGCCATCTTTTTTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGTTGGCCCGCTGGAAAAGGAAAGATAGTTTTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCATACTACAATTTCGGGAAACCAGCGGCCAAATTTTATAGCTGTGATTTTTCAGAAGACAAGACAAGAAATAGGTATGTGAGACACGTACTACAGTTTCAGGGAACCAGCTGACCAACTTTATAGCCGTGATTTTACAAAAGAGAAGATAAGAAATAGATTAGTGAAGTCCAAGATGTAAGCCCCTACTGTGTGCAAGACCCAGTTAGAAGACAGTTTTATTAGTGTGACTGGCTGTGAATCCCTTAACTGTGCCAATGGATTTTTCAGAACTCCAGTCGGTTCCACATATTTTATAGAAATATTTGCAAGGATTGGAGGCCAGTGTCTTGTTTTTCAGTCTCACGCTTGAGGTCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6805#0 TGTTCCTTCCCATGAAGAGATTATTGAGGCTAAGCTAAGAGATAAATCATATCTTAGATC 60 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GTTGTCCTTAAACTGGTCTGAGACTACTAATGTATTGAGCCACATTCTCATCTTGAAAAT 120 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 CTGGAAATATCAGGGTATAATGGTCTTCGATTTCCAACTTGGCTAAGCCATCCATGCCTG 180 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 ATAAATATGGTGTCACTAGAGCTGAGAAAATGTAGAAGTTGGGCATACCTCCCAGCTCTT 240 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GGAAATTTACAGCGGCTCAAGCATCTTGAATTGCACAAACTTGCAGAATTGAAACGGATC 300 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GACCAATCATCAGGCAATTCCCTGCCCCCAAATCTGAAAACTCTAGTGGTGGAAGGTTGC 360 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 AAAAAATTAGGGGAACTGCCACTTCTACCTTCAAGTTTGACACGGTTAGAAGTAAATGAT 420 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GTTGGATTGACCACCCTTCCAAGGATATATGACCATCATGTTAACAACATGGATTTTGAA 480 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 AGCAAGGAAACCAAGCTAATCTCAGTTATCATCAGCAACTGCTCAAATTTAATTTCTCTG 540 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GAGGAAAGCTTTCTACTGCAGGAGCACCATATCCGAAGTCTTCGTATCCTAAGGATTGTT 600 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GATTGTGAAAAGTTGATCCGAGCTCCTTTGTTATTTTCAGAAATGGATAATCTTGCAGAA 660 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 TTTCATATTGGTAAGTGTTACCGGTTGAGAGTGAGGGAAAACGATGATAATGTACTACTC 720 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 CCCCGCACACTTAAGGAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCACTGCTG 780 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GAGTCACTGGTTGGTCTGACTAATCTTACGTCATTGAGTCTGCGTAACTGCGGCAGGGTG 840 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 AGGTCCCTTCCACAGTCAGACGTGTTCCGGAGTCTCAGGTCACTGCGAGAGATGGCTGTG 900 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GCTGATTGTACTAGCTTGGCATCCTTGGGTGGGCTTGGAGCCCTTTCATATCTCAATTGG 960 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 CTGGAAATCACAGAGTGCCCGAGGCTTCAGGGGTATGCCAGATATGATGAAGTGGATGAA 1020 consensus_6805#2 ------------------------------------------------------------ consensus_6805#1 ------------------------------------------------------------ consensus_6805#0 GATCCGGTGTTGGAGTTCTCCCTGGAGGTCTACTCTCTCTGGATACATACCCCCGATATG 1080 consensus_6805#2 ----------------------------------------------------CCGATATG 8 consensus_6805#1 --------------GTTCAAGCGAGGATTATTTTCTCTTAAAGAGAGTGAATACCAAAAC 46 * * * consensus_6805#0 TTACAAAGGGAGCCGCTTAGGAGATTACACAACACAAAATGCTTGATTATTTCTGTTGGC 1140 consensus_6805#2 TTACAAAGGGAGCCGCTTAGGAGATTACCCTCCCCAAAATGCTTGATTATTTCTGTTGGC 68 consensus_6805#1 CTCCATATAAAACCACATCATA-ACAATTCTTCAAAAAAAGAA-AAACACTCCCATGGGT 104 * ** * * ** * * * * * * * **** * * * * * * ** consensus_6805#0 C----GTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCT 1196 consensus_6805#2 C----GTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCT 124 consensus_6805#1 CTAATATGATATTAGACAACCTCATAAAATTAAGATAAAAATAAAATTCATCGATCAGAT 164 * ***** * ** ** ** * *** * ** * * * ** * consensus_6805#0 GGAGAT-ACTGAAACCAGAGGTGAAGCTTTTAG-TAAATAACCTTTGCTC-TCTCAA--- 1250 consensus_6805#2 GGAGAT-ACTGAAACCAGAGGTGAAGCTTTTAG-TAAATAACCTTTGCTC-TCTCAA--- 178 consensus_6805#1 GAAACTCACTAATATTGAAAAAAAAGAAGCGAAATTAACAATGTTCACACATATCAACTA 224 * * * *** * * * *** * * ** ** ** * * * **** consensus_6805#0 GAGAT-TGGAATTTGATACAACTCATCGGTTNCTTGA-GTTTNCCATTCTGNCATCTCCT 1308 consensus_6805#2 GAGAT-TGGAATTTGATACAACTCATCGTTTCCTTGA-GTTTCCCATTTTGCCATCTTTT 236 consensus_6805#1 GAGCTCTAAAATAAGAGATCGATCAGCTTTTCCTGGATGACTTTCAGTTCAATACTGGTT 284 *** * * *** ** * *** * ** ** ** * * ** * * * consensus_6805#0 CTGGAGTCTTTCATTATTAGAAGATGTAATC-------CAGAGTTGNTGGCACGCTGGAA 1361 consensus_6805#2 TTGGAGTCTTTCATTATTAGAAGATGTAATC-------CAGAGTTGTTGGCCCGCTGGAA 289 consensus_6805#1 ---GGCCATTTTACTTTGAGAGGCTACTACTGAACAATCAAGCTTGTTTACCGACAAGGA 341 * *** * * * *** * * * ** *** * * * * * consensus_6805#0 AAGGAAAGA-TAGTTCTGAATGGGACAGGATTTCACT-CATCCGC-----CATATGAGAA 1414 consensus_6805#2 AAGGAAAGA-TAGTTTTGAATGGGACAGGATTTCACT-CATCCGC-----CATATGAGAA 342 consensus_6805#1 ACGGCATGAACGGATGAACATGTCATTGCATTTTTTTGTGTGTGCATTTCCATCCTTTAA 401 * ** * ** * * *** * * **** * * ** *** ** consensus_6805#0 TAGGAGATGCNTACTACAATTTCGGGAAANCAGCGGACAAANTTT-TAGCTGGGATTCTT 1473 consensus_6805#2 TAGGAGATGCATACTACAATTTCGGGAAACCAGCGGCCAAATTTTATAGCTGTGATTTTT 402 consensus_6805#1 TTCCACATGTGATTCACA--TTCGTGAGACTGAGAAACAAGACAC-TGGCCTCGAATCCT 458 * * *** *** **** ** * *** * ** ** * * consensus_6805#0 CAAAANACAAGACAANAA-TAGGGNTGGGAGAAACGTNCAACAGNTTTAGGGNACCAGCT 1532 consensus_6805#2 CAGAAGACAAGACAAGAAATAGGTATGTGAGACACGTACTACAGTTTCAGGGAACCAGCT 462 consensus_6805#1 T-GCAGATATTTCTATAA-----AATATGTGGAACTGACTGTAGTTCTGAAGAATCCATT 512 * * * * * ** * * * ** * ** * * * * * consensus_6805#0 GACCAACTTT-TAGCCGGGATTTTC--AAAGGGNAGTTAG--AATTGNTT---------- 1577 consensus_6805#2 GACCAACTTTATAGCCGTGATTTTACAAAAGAGAAGATAAGAAATAGATTAGTGAAGTCC 522 consensus_6805#1 GGCACAGTTA-AGGTATTCACAGCCAGTCACACTAATAAAACTGTCTTCTAACTGGGTCT 571 * * * ** * * * * * * * consensus_6805#0 ------------------------------------------------------------ consensus_6805#2 AAGATGTAAGCCCCTACTGTGTGCAAGACCCAGTTAGAAGACAGTTTTATTAGTGTGACT 582 consensus_6805#1 TGCACACAGAAGGGGCTTACATCTTGGACTTCACTAATCTATTGCTTATCTTCTCTTTTG 631 consensus_6805#0 ------------------------------------------------------------ consensus_6805#2 GGCTGTGA-ATCCCTTAACTGTGCCAATGGATTTTTCAGAACTCCAGTCGGTTCCACATA 641 consensus_6805#1 AAGAATCACGGGTATAAAGTTGGTCAGCTGGTTCCCTGAAACTGCTGTACGTGTCTCACA 691 consensus_6805#0 ------------------------------------------------------------ consensus_6805#2 TTTTATAGAAATATTTGCAAGGATTGGAGGCCAGTGTCTTGTTTTTCAGTCTCACGCTTG 701 consensus_6805#1 TACCTATTTCTTGGCTTGTCTTCTGAAAAATCACAGC----------------------- 728 consensus_6805#0 -------- consensus_6805#2 AGGTCCCA 709 consensus_6805#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||