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Oryza sativa
cluster # 6817 cluster # 6817       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6817#0 length = 2544 sequences # 4  

consensusID : consensus_6817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2544
fasta sequence
                              [AGTAGTAGTCCTCCATGGCTTAACAACAAGAGAAGCGCGCAATTAGGGAAACCGTTTGGTCTTCCTTAATTGCGCCCTCGCCCCCGCGGCAACCGTCCTTCTCCTCCATCTCCCCTTCCACGCCGCTGCCCTCCCCTCTCCTCTCCCCTCCCGCCGAGAAATCGGTAAGTAGTGGACTAGTCGCTGCGACTCCGCGAGGGTTCCCCGGCTGCTTGTCCACGGGATCCCACGACCCGGCGGCGTTGCGGCGAGGAGGAGGAGAGCAGTTTGGGGGTCTCGCCGCGATCGCTGAGATCTCAGTTTGCCAAGGGGTTCAAGTTTCATGAGTCATCTTGACGTTGTTACTACTGTGGAAGTTGCAATTCTTCATGGATGTCCTCAAGAGTGATGTGAAGAAGACTGGTATTCTCAATGAGACTCTAAGACCACCGCTAGTTCCATCCGAGAAGCATAATGCTTCTCCAGTAAACCGTGGGAGAGATGTTGCTTCCAGGTACAAGAATGGTCTGTCTGCTCATTCTGCTGCCACCACAGCAAGGAGATGCACATCACCAAGTCCTGGGCGGACCTCCGCAAATGAATGCACACCAGAACCAAAAAGAGCTCAATCAGCAGACAGAAGAAGGCCCTCAACTCCTTCTTCTAGAGTGTCAACACCCTCCACCCCTGCATCAAGGTCTGTCACACCAGTTCGTAATACTGTTACAGAGGGACATAAGAGTTCTAGGCGAATAACAAGCACAAGGAATACTGATGGCTTGTGGCCAGCAATGCGAAACCTATCTTCCTCTTTCCAGTCAGAATCTGTGGTTACCCCCGGTAATAAAAAGGATAAGGTAGTCCCCAGTGGATCTTTGGATCAAACGAAGGGGCAAGCTAGTGTTATAGCCGAGAGGAAGAGGAGTCCTCTGAGAAGGAAGAACATTGGTGAACAATGTGAGAATGCTCAACCCTCAGAGGACCAACCTAGGAGGGTAATCGAACAACACCGCTGGCCAGCAATGCAGAGTGGCCGTGTGGCCAGCAATATTTTGTCAAGGAGTATTGACATGTCTGACAAAGCTGGCAGATCAGTCCCTTCAACAAATATTTCTAGAGGTGTTTCACCAAGGAAGACGCTTGCTTCTGAAGGCACAGGCAAAGGGTTTAATAAATCATTGGATGAGGTAGCAAGGAGATTGGCTATTCATGCAGGTGGAAGAGATGACAAAGTAGACTCTCGCTGTCATGCTTATTCACAGTCAACAGAGAGATGTAAATCCGTTAGCCGTCCAAGTAGGGCAGTTACTTTACCTGTTCCTGTTCTTCATCGCTCATCTTCGCCAAGCAAGGCCTCTTCAGTTACATCCTCTATTTCTAGGTCCTTTCAGAGCCCATCTCGGACAAGGCCTTCAACACCTAGCCGGTCACAAAGTGCTGGAAGTATTCAATCAGGTGTTGCGTCACCTATTATTAGCTACATGGTTGATGCAAAAAAAGGAAAGAAGAACTCCAGCCAAATTGAAAATATCCACCAATTGCACCTGTCTTATAATAGATACTTGCAATGGATCTTTGTAAATGCTTATGCAGAAGATACTATGTCTTTCCAAAAAGTGACAGCTGAGAGTATTATATATAATGTTTTGAGGAATACCTCGAACTTGCGGGATGTTGTTAATATGAGAAGAATCATGGTTCAATGCATACAACAAGAGTTGAAGCTACATGGCATTCTTAAAGAGCAGATTGATTACCTTGAACAATGGCCAGCACTTGAAAAGGAGAACAGTATTTCATTATTCCACGCAACTGAAGCTCTAAAAGCAAGCACATTGCGTCTTCCAGTTACATCAGGAGCAAAGGCTGATGTAGTTGCTCTTAAGAATGCCGTAAGCTCTGCTGTTGATATCATGCAAGGTTTGGGATCAGCGGTTCGCTGTATGCTTCCAAAGGTTGAGGACAGGACATATTTGGTATCAGAACTTTCAGTTATAGCAAGACAAGAAAAGGCCATGCTTGATGAATGCAGAGAATTATTAGCTATGGCAGCAAAACTACAGGTACAGGAGTCCAGCCTGCGGACGCATCTCACACAACTGAGGCCTGGAATTGCTCATATGATTTGACAATCTAAGGGAAGATCTGCAAGTCCCAGACCAGCCTTCTGAACAGGTACACCAGTGCAAGTTGAGCCTCTGGCGATATGAACATATTGTGCAAACATACAAGGAGTTTGTAGAGATGAAATAATAGACC-AAAGAACGTTGAACATCCCCTGGTGATCATGGAGTGATGCTGTGCAGCTAACAGCTCATGGTGCGGTACAGATGATAGATTTACTAAAAAGGTCTCCTCATGTGTAAATAAATTCATTCAGGTTCCCCACACCCACCTACCTCTCTTTAGTTTCTCTAAAATTATTTGTTAGTATTTCTACAATGATAGAGCTATGTTCTTTCCGATTGTATTTTTTGGCATCTGGAAAGAAAATACACAGATGAAATGGAAGGGCAAAGTAATGAAAAAAGTGTATTTCCCTTTTTCTTCTCCTCCCAAAAAAAA]

[+] EMBL AK100679             [AGTAGTAGTCCTCCATGGCTTAACAACAAGAGAAGCGCGCAATTAGGGAAACCGTTTGGTCTTCCTTAATTGCGCCCTCGCCCCCGCGGCAACCGTCCTTCTCCTCCATCTCCCCTTCCACGCCGCTGCCCTCCCCTCTCCTCTCCCCTCCCGCCGAGAAATCGGTAAGTAGTGGACTAGTCGCTGCGACTCCGCGAGGGTTCCCCGGCTGCTTGTCCACGGGATCCCACGACCCGGCGGCGTTGCGGCGAGGAGGAGGAGAGCAGTTTGGGGGTCTCGCCGCGATCGCTGAGATCTCAGTTTGCCAAGGGGTTCAAGTTTCATGAGTCATCTTGACGTTGTTACTACTGTGGAAGTTGCAATTCTTCATGGATGTCCTCAAGAGTGATGTGAAGAAGACTGGTATTCTCAATGAGACTCTAAGACCACCGCTAGTTCCATCCGAGAAGCATAATGCTTCTCCAGTAAACCGTGGGAGAGATGTTGCTTCCAGGTACAAGAATGGTCTGTCTGCTCATTCTGCTGCCACCACAGCAAGGAGATGCACATCACCAAGTCCTGGGCGGACCTCCGCAAATGAATGCACACCAGAACCAAAAAGAGCTCAATCAGCAGACAGAAGAAGGCCCTCAACTCCTTCTTCTAGAGTGTCAACACCCTCCACCCCTGCATCAAGGTCTGTCACACCAGTTCGTAATACTGTTACAGAGGGACATAAGAGTTCTAGGCGAATAACAAGCACAAGGAATACTGATGGCTTGTGGCCAGCAATGCGAAACCTATCTTCCTCTTTCCAGTCAGAATCTGTGGTTACCCCCGGTAATAAAAAGGATAAGGTAGTCCCCAGTGGATCTTTGGATCAAACGAAGGGGCAAGCTAGTGTTATAGCCGAGAGGAAGAGGAGTCCTCTGAGAAGGAAGAACATTGGTGAACAATGTGAGAATGCTCAACCCTCAGAGGACCAACCTAGGAGGGTAATCGAACAACACCGCTGGCCAGCAATGCAGAGTGGCCGTGTGGCCAGCAATATTTTGTCAAGGAGTATTGACATGTCTGACAAAGCTGGCAGATCAGTCCCTTCAACAAATATTTCTAGAGGTGTTTCACCAAGGAAGACGCTTGCTTCTGAAGGCACAGGCAAAGGGTTTAATAAATCATTGGATGAGGTAGCAAGGAGATTGGCTATTCATGCAGGTGGAAGAGATGACAAAGTAGACTCTCGCTGTCATGCTTATTCACAGTCAACAGAGAGATGTAAATCCGTTAGCCGTCCAAGTAGGGCAGTTACTTTACCTGTTCCTGTTCTTCATCGCTCATCTTCGCCAAGCAAGGCCTCTTCAGTTACATCCTCTATTTCTAGGTCCTTTCAGAGCCCATCTCGGACAAGGCCTTCAACACCTAGCCGGTCACAAAGTGCTGGAAGTATTCAATCAGGTGTTGCGTCACCTATTATTAGCTACATGGTTGATGCAAAAAAAGGAAAGAAGAACTCCAGCCAAATTGAAAATATCCACCAATTGCACCTGTCTTATAATAGATACTTGCAATGGATCTTTGTAAATGCTTATGCAGAAGATACTATGTCTTTCCAAAAAGTGACAGCTGAGAGTATTATATATAATGTTTTGAGGAATACCTCGAACTTGCGGGATGTTGTTAATATGAGAAGAATCATGGTTCAATGCATACAACAAGAGTTGAAGCTACATGGCATTCTTAAAGAGCAGATTGATTACCTTGAACAATGGCCAGCACTTGAAAAGGAGAACAGTATTTCATTATTCCACGCAACTGAAGCTCTAAAAGCAAGCACATTGCGTCTTCCAGTTACATCAGGAGCAAAGGCTGATGTAGTTGCTCTTAAGAATGCCGTAAGCTCTGCTGTTGATATCATGCAAGGTTTGGGATCAGCGGTTCGCTGTATGCTTCCAAAGGTTGAGGACAGGACATATTTGGTATCAGAACTTTCAGTTATAGCAAGACAAGAAAAGGCCATGCTTGATGAATGCAGAGAATTATTAGCTATGGCAGCAAAACTACAGGTACAGGAGTCCAGCCTGCGGACGCATCTCACACAACTGAGGCCTGGAATTGCTCATATGATTTGACAATCTAAGGGAAGATCTGCAAGTCCCAGACCAGCCTTCTGAACAGGTACACCAGTGCAAGTTGAGCCTCTGGCGATATGAACATATTGTGCAAACATACAAGGAGTTTGTAGAGATGAAATAATAGACCAAAAGAACGTTGAACATCCCCTGGTGATCATGGAGTGATGCTGTGCAGCTAACAACTCATGGTGCGGTACAGATGATAGATTTACTTAAAAGGTCTCCTCATGTGTAAATAAATTCATTCAGGTTCCCCACACCCACCTACCTCTCTTTAGTTTCTCTAAAATTATTTGTTAGTATTTCTACAATGATAGAGCTATGTTCTTTCCGATTGTATTTTTTGGCATCTGGAAAGAAAATACACAGATGAAATGGAAGGGC                                                  ]
[-] EMBL CB657850             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTCACACCAGTTCGTAATACTGTTACAGAGGGACATAAGAGTTCTAGGCGAATAACAAGCACAAGGAATACTGATGGCTTGTGGCCAGCAATGCGAAACCTATCTTCCTCTTTCCAGTCAGAATCTGTGGTTACCCCCGGTAATAAAAAGGATAAGGTAGTCCCCAGTGGATCTTTGGATCAAACGAAGGGGCAAGCTAGTGTTATAGCCGAGAGGAAGAGGAGTCCTCTGAGAAGGAAGAACATTGGTGAACAATGTGAGAATGCTCAACCCTCAGAGGACCAACCTAGGAGGGTAATCGAACAACACCGCTGGCCAGCAATGCAGAGTGGCCGTGTGGCCAGCAATATTTTGTCAAGGAGTATTGACATGTCTGACAAAGCTGGCAGATCAGTCCCTTCAACAAATATTTCTAGAGGTGTTTCACCAAGGAAGACGCTTGCTTCTGAAGGCACAGGCAAAGGGTTTAATAAATCATTGGATGAGGTAGCAAGGAGATTGGCTATTCATGCAGGTGGAAGAGATGACAAAGTAGACTCTCGCTGTCATGCTTATTCACAGTCAACAGAGAGATGTAAATCCGTTAGCCGTCCAAGTAGGGCAGTTACTTTACCTGTTCCTGTTCTTCATCGCTCATCTTCGCCAAGCAAGGCCTCTTCAGTTACATCCTCTATTTCTAGGTCCTTTCAGAGCCCATCTCGGACAAGGCCTTCAACACCTAGCCGGTCACAAAGTGCTGGAAGTATTCAATCAAGGGTTGCGTCACCTATTATTAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI812933             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GACAAGAAAA GCCATGCTTGATGAAT CAGAGAATTATTAGCTAT GCA CAAAACTACAGGTACAGGAGTCCAGCCTGCGGACGCATCTCACACAACTGAGGCCTGGAATTGCTCATATGATTTGAC ATCTAAGGGAAGATCTGCAAGTCCCAGACCAGCCTTCTGAACAGGTACACC GTGCAAGTTGAGCCTCTGGCGATATGAACATATTGTGC AACATACAAGGAGTTTGTAGAGATGAAATAATAGACC AAAGAACGTTGAACATCCCCTGGTGATCATGGAGTGATGCTGTGCAGCTAACAGCTCATGGTGCGGTACAGATGATAGATTTACTAAAAAGGTCTCCTCATGTGTAAATAAATTCATTCAGGTTCCCCACACCCACCTACCTCTCTTTAGTTTCTCTAAAATTATTTGTTAGTATTTCTAC ATGATAGAGCTATGTTCTTTCCGATTGTATTTTTTGGCATCTGGAAAGAAAATACACAGATGAAATGGAAGGGCAAAGTAATGAAAAAAGTGTATTTCCCTTTTTCTTCTCCTCCCAAAAAAAA]
[+] EMBL BI812131             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTGCGGACGCATCTCACACAACTGAGGCCTGGAATTGCTCATATGATTTGACAATCTAAGGGAAGATCTGCAAGTCCCAGACCA CCTTCTGAACAGGTACACCAGTGCAAGTTGAGCCTCTGGCGATATGAACATATTGTGCAAACATACAAGGAGTTTGTAGAGATGAAATAATAGACC AAAGAACGTTGAACATCCCCTGGTGATCATGGAGTGATGCTGTGCAGCTAACAGCTCATGGTGCGGTACAGATGATAGATTTACTAAAAAGGTCTCCTCATGTGTAAATAAATTCATTCAGGTTCCCCACACCCACCTACCTCTCTTTAGTTTCTCTAAAATTATTTGTTAGTATTTCTACAATGATAGAGCTATGTTCTTTCCGATTGTATTTTTTGGCATCTGGAAAGAAAATACACAGATGAAATGGAAGGGCAAAGTAATGAAAAAAGTGTATTTCCCTTaaaaaa                ]


>consensus_6817#0 AGTAGTAGTCCTCCATGGCTTAACAACAAGAGAAGCGCGCAATTAGGGAAACCGTTTGGT CTTCCTTAATTGCGCCCTCGCCCCCGCGGCAACCGTCCTTCTCCTCCATCTCCCCTTCCA CGCCGCTGCCCTCCCCTCTCCTCTCCCCTCCCGCCGAGAAATCGGTAAGTAGTGGACTAG TCGCTGCGACTCCGCGAGGGTTCCCCGGCTGCTTGTCCACGGGATCCCACGACCCGGCGG CGTTGCGGCGAGGAGGAGGAGAGCAGTTTGGGGGTCTCGCCGCGATCGCTGAGATCTCAG TTTGCCAAGGGGTTCAAGTTTCATGAGTCATCTTGACGTTGTTACTACTGTGGAAGTTGC AATTCTTCATGGATGTCCTCAAGAGTGATGTGAAGAAGACTGGTATTCTCAATGAGACTC TAAGACCACCGCTAGTTCCATCCGAGAAGCATAATGCTTCTCCAGTAAACCGTGGGAGAG ATGTTGCTTCCAGGTACAAGAATGGTCTGTCTGCTCATTCTGCTGCCACCACAGCAAGGA GATGCACATCACCAAGTCCTGGGCGGACCTCCGCAAATGAATGCACACCAGAACCAAAAA GAGCTCAATCAGCAGACAGAAGAAGGCCCTCAACTCCTTCTTCTAGAGTGTCAACACCCT CCACCCCTGCATCAAGGTCTGTCACACCAGTTCGTAATACTGTTACAGAGGGACATAAGA GTTCTAGGCGAATAACAAGCACAAGGAATACTGATGGCTTGTGGCCAGCAATGCGAAACC TATCTTCCTCTTTCCAGTCAGAATCTGTGGTTACCCCCGGTAATAAAAAGGATAAGGTAG TCCCCAGTGGATCTTTGGATCAAACGAAGGGGCAAGCTAGTGTTATAGCCGAGAGGAAGA GGAGTCCTCTGAGAAGGAAGAACATTGGTGAACAATGTGAGAATGCTCAACCCTCAGAGG ACCAACCTAGGAGGGTAATCGAACAACACCGCTGGCCAGCAATGCAGAGTGGCCGTGTGG CCAGCAATATTTTGTCAAGGAGTATTGACATGTCTGACAAAGCTGGCAGATCAGTCCCTT CAACAAATATTTCTAGAGGTGTTTCACCAAGGAAGACGCTTGCTTCTGAAGGCACAGGCA AAGGGTTTAATAAATCATTGGATGAGGTAGCAAGGAGATTGGCTATTCATGCAGGTGGAA GAGATGACAAAGTAGACTCTCGCTGTCATGCTTATTCACAGTCAACAGAGAGATGTAAAT CCGTTAGCCGTCCAAGTAGGGCAGTTACTTTACCTGTTCCTGTTCTTCATCGCTCATCTT CGCCAAGCAAGGCCTCTTCAGTTACATCCTCTATTTCTAGGTCCTTTCAGAGCCCATCTC GGACAAGGCCTTCAACACCTAGCCGGTCACAAAGTGCTGGAAGTATTCAATCAGGTGTTG CGTCACCTATTATTAGCTACATGGTTGATGCAAAAAAAGGAAAGAAGAACTCCAGCCAAA TTGAAAATATCCACCAATTGCACCTGTCTTATAATAGATACTTGCAATGGATCTTTGTAA ATGCTTATGCAGAAGATACTATGTCTTTCCAAAAAGTGACAGCTGAGAGTATTATATATA ATGTTTTGAGGAATACCTCGAACTTGCGGGATGTTGTTAATATGAGAAGAATCATGGTTC AATGCATACAACAAGAGTTGAAGCTACATGGCATTCTTAAAGAGCAGATTGATTACCTTG AACAATGGCCAGCACTTGAAAAGGAGAACAGTATTTCATTATTCCACGCAACTGAAGCTC TAAAAGCAAGCACATTGCGTCTTCCAGTTACATCAGGAGCAAAGGCTGATGTAGTTGCTC TTAAGAATGCCGTAAGCTCTGCTGTTGATATCATGCAAGGTTTGGGATCAGCGGTTCGCT GTATGCTTCCAAAGGTTGAGGACAGGACATATTTGGTATCAGAACTTTCAGTTATAGCAA GACAAGAAAAGGCCATGCTTGATGAATGCAGAGAATTATTAGCTATGGCAGCAAAACTAC AGGTACAGGAGTCCAGCCTGCGGACGCATCTCACACAACTGAGGCCTGGAATTGCTCATA TGATTTGACAATCTAAGGGAAGATCTGCAAGTCCCAGACCAGCCTTCTGAACAGGTACAC CAGTGCAAGTTGAGCCTCTGGCGATATGAACATATTGTGCAAACATACAAGGAGTTTGTA GAGATGAAATAATAGACCAAAGAACGTTGAACATCCCCTGGTGATCATGGAGTGATGCTG TGCAGCTAACAGCTCATGGTGCGGTACAGATGATAGATTTACTAAAAAGGTCTCCTCATG TGTAAATAAATTCATTCAGGTTCCCCACACCCACCTACCTCTCTTTAGTTTCTCTAAAAT TATTTGTTAGTATTTCTACAATGATAGAGCTATGTTCTTTCCGATTGTATTTTTTGGCAT CTGGAAAGAAAATACACAGATGAAATGGAAGGGCAAAGTAATGAAAAAAGTGTATTTCCC TTTTTCTTCTCCTCCCAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)