These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1012 fasta sequence [ATGCAGAGGACCGCCAAGGAGCTGCTCGAGCAGTATCTCAAGTTCCGGCAGGAGGCCGACGACGACGGCGACGGTGGTGACAACAAGAAGGCGAGCAAGAAAGGGAAGAAGAAGAAGAAGGAGAAGGACCCCTCAAAGCCGAAGCAGCCCATGTCCGCCTACTTCGTCTACACCCAGCAGCGCCGCGCGGCGCTCGTCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGACGGACAACATCATCAAGAAGACCAAGGAGGAGCAGAGGAAGAAGAAGGTGGGCGGCGCCGCCGCTGCCGCCGACCCGAACCGGCCCAAGAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCAGCTGGCGGAGGAGCGCCCCGGCGTGGCGAGCTCCACGCTGACCGCGCTCGTGTCGGTGAAGTGGAAGGAGCTCGGGGAGGCGGAGAAGCAGGCGTGGAACGGCAAGGCCGCGGAGGCCATGGCGGCGTACAAGAGGGACATGGAGGAGTACACCAAGGCGGCGGCCAGCGGCGGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATACA] [+] EMBL AK070270 [ATGCAGAGGACCGCCAAGGAGCTGCTCGAGCAGTATCTCAAGTTCCGGCAGGAGGCCGACGACGACGGCGACGGTGGTGACAACAAGAAGGCGAGCAAGAAAGGGAAGAAGAAGAAGAAGGAGAAGGACCCCTCAAAGCCGAAGCAGCCCATGTCCGCCTACTTCGTCTACACCCAGCAGCGCCGCGCGGCGCTCGTCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGACGGACAACATCATCAAGAAGACCAAGGAGGAGCAGAGGAAGAAGAAGGTGGGCGGCGCCGCCGCTGCCGCCGACCCGAACCGGCCCAAGAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCAGCTGGCGGAGGAGCGCCCCGGCGTGGCGAGCTCCACGCTGACCGCGCTCGTGTCGGTGAAGTGGAAGGAGCTCGGGGAGGCGGAGAAGCAGGCGTGGAACGGCAAGGCCGCGGAGGCCATGGCGGCGTACAAGAGGGACATGGAGGAGTACACCAAGGCGGCGGCCAGCGGCGGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATACA] [+] EMBL AU030146 [ GCGGCGCCGCNTNGACCGCCGACCCGAACCGGCCCAAGAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCA CTGGCGGAGGAGCGCCCCGGCGTNGCGAGCTCCACNCTGACCGCGCTCGTNTCGGTGAAGTGGAAGGAGCTCGGGGAGGCGGAGAAGCAGGCGTNGAACNGCAATGCCGCGGAGGCCATNGCGGCGTACAAGAGGGACATNGAGGAGTACACCAAGG ] consensusID : consensus_6818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [NAATTGTTACCGGNCCCCCCCTCGANTTCGACCCACGCGTCCNAAAANTTGNCNCNCCNCCTTACCGCCGACCNNAACCGNCCCAAGAAGCCGGCTTCGTCGTTCCTGCTGTTCAGCAAGNANTCGAGNCGNCAGCTGNCGNAGGAGCGCCCCGNCGTGGCGAGNTCCACNCTGACCGCGCTCGTGTCGGTGAAGTGGNAGGANCTCGGGGANGCGGAGAAGCAGNCNTGGAACGGCAAGGCCGCGGAGNCCATGGCGGCGTACAAGAGGGACATGGAGGNGTACACCAAGGCGGCGGCCAGCGGCNGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGNGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGNTTATTTTCATAAAAAA] [+] EMBL AU030147 [NAATTGTTACCGGNCCCCCCCTCGANTTCGACCCACGCGTCCNAAAANTTGNCNCNCCNCCTTACCGCCGACCNNAACCGNCCCAAGAAGCCGGCTTCGTCGTTCCTGCTGTTCAGCAAGNANTCGAGNCGNCAGCTGNCGNAGGAGCGCCCCGNCGTGGCGAGNTCCACNCTGACCGCGCTCGTGTCGGTGAAGTGGNAGGANCTCGGGGANGCGGAGAAGCAGNCNTGGAACGGCAAGGCCGCGGAGNCCATGGCGGCGTACAAGAGGGACATGGAGGNGTACACCAAGGCGGCGGCCAGCGGCNGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGNGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGNTTATTTTCATAAAAAA] consensusID : consensus_6818#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [TCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATAAAAAAA] [+] EMBL AU165893 [TCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6818#0 ATGCAGAGGACCGCCAAGGAGCTGCTCGAGCAGTATCTCAAGTTCCGGCAGGAGGCCGAC 60 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 ------------------------------------------------------------ consensus_6818#0 GACGACGGCGACGGTGGTGACAACAAGAAGGCGAGCAAGAAAGGGAAGAAGAAGAAGAAG 120 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 ------------------------------------------------------------ consensus_6818#0 GAGAAGGACCCCTCAAAGCCGAAGCAGCCCATGTCCGCCTACTTCGTCTACACCCAGCAG 180 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 -------------------------------------------------------NAATT 5 consensus_6818#0 CGCCGCGCGGCGCTCGTCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGG-------AT 233 consensus_6818#2 ----------------TCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGG-------AT 37 consensus_6818#1 GTTACCGGNCCCCCCCTCGANTTCGACCCACGCGTCCNAAAANTTGNCNCNCCNCCTTAC 65 *** * ***** * * * * * consensus_6818#0 CACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGC 293 consensus_6818#2 CACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGC 97 consensus_6818#1 CGCCGACCNNAACCGNCCCAAGAAGCCGGCTTCGTCGTTCCTGCTGTTCAGCAAGNANTC 125 * *** * * * ** * * * ** * ** **** * * consensus_6818#0 GCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGA 353 consensus_6818#2 GCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGA 157 consensus_6818#1 GAGNCGNCAGCTGNCGNAGGAGCGCCCCGNCGTGGCGAGNTCCACNCTGACCGCGCTCGT 185 * * *** * * ** * * * ***** * * * ** ** * consensus_6818#0 GGAGGCGGCGTGCCAGGAG---AAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGA 410 consensus_6818#2 GGAGGCGGCGTGCCAGGAG---AAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGA 214 consensus_6818#1 GTCGGTGAAGTGGNAGGANCTCGGGGANGCGGAGAAGCAGNCNTGGAACGGCAAGGCCGC 245 * ** * *** **** ** * **** ***** ** * *** * consensus_6818#0 GGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGACGGACAACATCATCAAGAAGACCAAGGA 470 consensus_6818#2 GGCGCTCCAGCTGCTCAAGAAGAAGGAGAAG----------------------------- 245 consensus_6818#1 GGAGNCCATGGCGGCGTACAAGAGGGACATG----------------------------- 276 ** * * * * * **** *** * * consensus_6818#0 GGAGCAGAGGAAGAAGAAGGTGGGCGGCGCCGCCGCTGCCGCCGACCCGAACCGGCCCAA 530 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 ------------------------------------------------------------ consensus_6818#0 GAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCAGCTGGCGGAGGA 590 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 ------------------------------------------------------------ consensus_6818#0 GCGCCCCGGCGTGGCGAGCTCCACGCTGACCGCGCTCGTGTCGGTGAAGTGGAAGGAGCT 650 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 ------------------------------------------------------------ consensus_6818#0 CGGGGAGGCGGAGAAGCAGGCGTGGAACGGCAAGGCCGCGGAGGCCATGGCGGCGTACAA 710 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 ------------------------------------------------------------ consensus_6818#0 GAGGGACATGGAGGAGTACACCAAGGCGGCGGCCAGCGGCGGCGGCGGCGGCGACGCCTC 770 consensus_6818#2 -----------------------------------------------GCGGCGACGCCTC 258 consensus_6818#1 ----------GAGGNGTACACCAAGGCGGCGGCCAGCGGCNGCGGCGGCGGCGACGCCTC 326 ************* consensus_6818#0 CCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGT 830 consensus_6818#2 CCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGT 318 consensus_6818#1 CCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGT 386 ************************************************************ consensus_6818#0 CCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGA 890 consensus_6818#2 CCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGA 378 consensus_6818#1 CCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGNGAAAACAGTAGCTTTGGTGA 446 *************************************** ******************** consensus_6818#0 TTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTG 950 consensus_6818#2 TTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTG 438 consensus_6818#1 TTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTG 506 ************************************************************ consensus_6818#0 GGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATA 1010 consensus_6818#2 GGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATA 498 consensus_6818#1 GGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGNTTATTTTCATA 566 ************************************************ *********** consensus_6818#0 CA---- 1012 consensus_6818#2 AAAAAA 504 consensus_6818#1 AAAAA- 571 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||