cluster # 682

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Oryza sativa
cluster # 682 cluster # 682 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_682#0 length = 356 sequences # 1

consensus_682#1 length = 290 sequences # 1

consensusID : consensus_682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGGGGTGGAAAAAACCCTTTTTATTTATGAGTTATGTTTCTTACATAAAACAAAACAGCAGTTGATTTAATCTTTGGGACATCCCCCCCCCGACAAAAGTCCCTTTTGGGGGGGGAGGAATTTTGAACGACCCCAATGCAACAAAGTTGATCAGCGAGGATCTTGGGGGGGGACCATTTTTTTTTTCACTCAGCGGGCTTTATTTCCTGTTTGAGGGCCCCAACCAGTTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATGGGGGGGCTCCACATGTCCATCGGAACCCCCTCCTTGATCGTTTAAAGC]

[+] EMBL CF330734             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGGGGTGGAAAAAACCCTTTTTATTTATGAGTTATGTTTCTTACATAAAACAAAACAGCAGTTGATTTAATCTTTGGGACATCCCCCCCCCGACAAAAGTCCCTTTTGGGGGGGGAGGAATTTTGAACGACCCCAATGCAACAAAGTTGATCAGCGAGGATCTTGGGGGGGGACCATTTTTTTTTTCACTCAGCGGGCTTTATTTCCTGTTTGAGGGCCCCAACCAGTTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATGGGGGGGCTCCACATGTCCATCGGAACCCCCTCCTTGATCGTTTAAAGC]




>consensus_682#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGGGGTGGAAAAA
ACCCTTTTTATTTATGAGTTATGTTTCTTACATAAAACAAAACAGCAGTTGATTTAATCT
TTGGGACATCCCCCCCCCGACAAAAGTCCCTTTTGGGGGGGGAGGAATTTTGAACGACCC
CAATGCAACAAAGTTGATCAGCGAGGATCTTGGGGGGGGACCATTTTTTTTTTCACTCAG
CGGGCTTTATTTCCTGTTTGAGGGCCCCAACCAGTTGGTTGTAGGCTTCCCTCCACCCCC
TTTTTATGGGGGGGCTCCACATGTCCATCGGAACCCCCTCCTTGATCGTTTAAAGC

consensusID : consensus_682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATAAAACAAAACAGCAGTTGATTTAATCTTTTGGACATACCCCCCCCCACAAAAGTCCCTTTTGGGGGGCGAGGAATTTTGAACCACCCCAATGCAACAAATTTGATCACCGAGGATCATGGGGGGGGACCATTTTTTTTTTTACTCAACAGGCTTTATTTCCTGTTTGATGGCCCCAACCAATTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATTGGGGGGCTCCAAATGTCCACC]

[+] EMBL CF318206             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATAAAACAAAACAGCAGTTGATTTAATCTTTTGGACATACCCCCCCCCACAAAAGTCCCTTTTGGGGGGCGAGGAATTTTGAACCACCCCAATGCAACAAATTTGATCACCGAGGATCATGGGGGGGGACCATTTTTTTTTTTACTCAACAGGCTTTATTTCCTGTTTGATGGCCCCAACCAATTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATTGGGGGGCTCCAAATGTCCACC]




>consensus_682#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATAAAACA
AAACAGCAGTTGATTTAATCTTTTGGACATACCCCCCCCCACAAAAGTCCCTTTTGGGGG
GCGAGGAATTTTGAACCACCCCAATGCAACAAATTTGATCACCGAGGATCATGGGGGGGG
ACCATTTTTTTTTTTACTCAACAGGCTTTATTTCCTGTTTGATGGCCCCAACCAATTGGT
TGTAGGCTTCCCTCCACCCCCTTTTTATTGGGGGGCTCCAAATGTCCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_682#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGGGGTGGAAAAA 60
consensus_682#1      ---------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------- 35
                              ***********************************                

consensus_682#0      ACCCTTTTTATTTATGAGTTATGTTTCTTACATAAAACAAAACAGCAGTTGATTTAATCT 120
consensus_682#1      ----TTTTTTTTT----------TTTTTTACATAAAACAAAACAGCAGTTGATTTAATCT 81
                         ***** ***          *** *********************************

consensus_682#0      TTGGGACATCCCCCCCCCGACAAAAGTCCCTTTTGGGGGGGGAGGAATTTTGAACGACCC 180
consensus_682#1      TTTGGACATACCCCCCCCCACAAAAGTCCCTTTTGGGGGGCGAGGAATTTTGAACCACCC 141
                     ** ****** ******** ********************* ************** ****

consensus_682#0      CAATGCAACAAAGTTGATCAGCGAGGATCTTGGGGGGGGACCATTTTTTTTTTCACTCAG 240
consensus_682#1      CAATGCAACAAATTTGATCACCGAGGATCATGGGGGGGGACCATTTTTTTTTTTACTCAA 201
                     ************ ******* ******** *********************** ***** 

consensus_682#0      CGGGCTTTATTTCCTGTTTGAGGGCCCCAACCAGTTGGTTGTAGGCTTCCCTCCACCCCC 300
consensus_682#1      CAGGCTTTATTTCCTGTTTGATGGCCCCAACCAATTGGTTGTAGGCTTCCCTCCACCCCC 261
                     * ******************* *********** **************************

consensus_682#0      TTTTTATGGGGGGGCTCCACATGTCCATCGGAACCCCCTCCTTGATCGTTTAAAGC 356
consensus_682#1      TTTTTATTGGGGGGCTCCAAATGTCCACC--------------------------- 290
                     ******* *********** ******* *