These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 801 fasta sequence [TCTTTTTTTTGACACAAAACATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGATTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATTGCTGTTTCACCAATCTGAACGAGCTAGCTGATGCAGTGATCCTGGTCCGGCGGCTATGGAAACCGTAGCTCCTGCGGAGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACGTCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGACGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGACCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGTCGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGTGGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGAGGAGGACGACGCCGAAGCTGTACACGTCGGACTCGACGCTCGCCCTCCCGGCGAGGAAGAAGCACTCCGCGTCGATGTACCCCATCGTGCCGGCGATGC] [+] EMBL CB622759 [TCTTTTTTTTGACACAAAACATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGATTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATTGCTGTTTCACCAATCTGAACGAGCTAGCTGATGCAGTGATCCTGGTCCGGCGGCTATGGAAACCGTAGCTCCTGCGGAGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACGTCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGACGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGACCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGTCGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGTGGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGAGGAGGACGACGCCGAAGCTGTAC ] [+] EMBL CB617733 [ CATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGATTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATTGCTGTTTCACCAATCTGAACGAGCTAGCTGATGCAGTGATCCTGGTCCGGCGGCTATGGAAACCGTAGCTCCTGCGGAGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACGTCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGACGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGACCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGTCGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGTGGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGAGGAGGACGACGCCGAAGCTGTACACGTCGGACTCGACGCTCGCCCTCCCGGCGAGGAAGAAGCACTCCGCGTCGATGTACCCCATCGTGCCGGCGATGC] [-] EMBL BI811968 [ ttttTAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGT ] consensusID : consensus_6830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [TTTTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAAGCGAATTCACGTGGATTAAGCTAATTCGATTGAGATTTGCATCCGGGGGATTGGCTGTTTCACCAATCTGAAGCGAGCATAGNCGTGATGGCAGTGAATCCGTGGTCCGGCGGCTAGTGGAAACCGTAGGCTCCGTGGCGGGAGGGTGTCATTGCTGGGTGTCACGGCCGGAACGACGGGTGGGACACCGGGCGGGCCGTACGGTCGGC] [-] EMBL BQ909247 [TTTTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAAGCGAATTCACGTGGATTAAGCTAATTCGATTGAGATTTGCATCCGGGGGATTGGCTGTTTCACCAATCTGAAGCGAGCATAGNCGTGATGGCAGTGAATCCGTGGTCCGGCGGCTAGTGGAAACCGTAGGCTCCGTGGCGGGAGGGTGTCATTGCTGGGTGTCACGGCCGGAACGACGGGTGGGACACCGGGCGGGCCGTACGGTCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6830#0 TCTTTTTTTTGACACAAAACATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGA 60 consensus_6830#1 ------------------------------------------------------------ consensus_6830#0 TTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGAT 120 consensus_6830#1 ------------------------------------------------------------ consensus_6830#0 TTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCA 180 consensus_6830#1 --TTTTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCA 58 ******************************************************* consensus_6830#0 TCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAA-CGAATTCACT--G 237 consensus_6830#1 TCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAAGCGAATTCACGTGG 118 ********************************************** ********* * consensus_6830#0 ATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATT--GCTGTTTCACCAATCTGAA-C 294 consensus_6830#1 ATTAAGCTAATTCGATTGAGATTTGCATCCGGGGGATTGGCTGTTTCACCAATCTGAAGC 178 ******************************* ** * ******************* * consensus_6830#0 GAGC-TAGC--TGATG-CAGTGATCC--TGGTCCGGCGGCTA-TGGAAACCGTAGCTCCT 347 consensus_6830#1 GAGCATAGNCGTGATGGCAGTGAATCCGTGGTCCGGCGGCTAGTGGAAACCGTAGGCTCC 238 **** *** ***** ****** * ************** ************ * consensus_6830#0 GCGG-----AGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACG 402 consensus_6830#1 GTGGCGGGAGGGTGTCATTGCTGGGTGTCACGGCCGG-------AACGACGGGTGGGACA 291 * ** ************** * * * ** * ** **** * ** consensus_6830#0 TCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGA 462 consensus_6830#1 CCGG-GCGGGCCGTACGGTCGGC------------------------------------- 313 ** * *** * **** consensus_6830#0 CGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGA 522 consensus_6830#1 ------------------------------------------------------------ consensus_6830#0 CCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGT 582 consensus_6830#1 ------------------------------------------------------------ consensus_6830#0 CGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGT 642 consensus_6830#1 ------------------------------------------------------------ consensus_6830#0 GGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGA 702 consensus_6830#1 ------------------------------------------------------------ consensus_6830#0 GGAGGACGACGCCGAAGCTGTACACGTCGGACTCGACGCTCGCCCTCCCGGCGAGGAAGA 762 consensus_6830#1 ------------------------------------------------------------ consensus_6830#0 AGCACTCCGCGTCGATGTACCCCATCGTGCCGGCGATGC 801 consensus_6830#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||