These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1234 fasta sequence [ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTAGCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT] [+] EMBL AK063329 [ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTAGCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT] [+] EMBL CB655625 [ TGGTGGCGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTG ] [-] EMBL CB655626 [ TTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGT ] consensusID : consensus_6831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence [GTAACTAGTACATAATTGTGTCATGTTTTTAAAATAGAAAATATAGCATTTTTGGTACTTTCTTGAAGACGATAAAATTACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGTACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTCTATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTACTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT] [+] EMBL CB096831 [GTAACTAGTACATAATTGTGTCATGTTTTTAAAATAGAAAATATAGCATTTTTGGTACTTTCTTGAAGACGATAAAATTACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGTACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTCTATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTACTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6831#0 ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTA 60 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 GCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGA 120 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 TACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGT 180 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 CGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGA 240 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 TCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGG 300 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 GGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACA 360 consensus_6831#1 -GTAACTAGTACATAATTGTGT-CATGTTTTTAAAATAGAAAAT-ATAGCATTTTTGGTA 57 * * ** * ** * * * * * * * * consensus_6831#0 TCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGA 420 consensus_6831#1 CTTTCTTGAAGACGATAAAATT--ACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGT 115 ** *** * * ** * * ** * * *** * consensus_6831#0 GGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAA 480 consensus_6831#1 ACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAA 175 * *************************************************** consensus_6831#0 GACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGG 540 consensus_6831#1 GACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGG 235 ************************************************************ consensus_6831#0 ACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCA 600 consensus_6831#1 ACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCA 295 ************************************************************ consensus_6831#0 TTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCC 660 consensus_6831#1 TTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCC 355 ************************************************************ consensus_6831#0 CTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGT 720 consensus_6831#1 CTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGT 415 ************************************************************ consensus_6831#0 TTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTA 780 consensus_6831#1 TTTGTAAGGAGAAAGAA-TCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTA 474 ***************** ****************************************** consensus_6831#0 TATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGG 840 consensus_6831#1 TATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGG 534 ************************************************************ consensus_6831#0 GCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCG 900 consensus_6831#1 GCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCG 594 ************************************************************ consensus_6831#0 TCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTT-GATTGGGAGCTC 959 consensus_6831#1 TCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTC 654 *********************************************** ************ consensus_6831#0 ACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTC 1019 consensus_6831#1 ACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTC 714 ******************************************* ********* ****** consensus_6831#0 TATGTCCACGAATCTGGCCCATAC-AAAACCACTGATGAGTTTTGGGATGG-CGAGATTA 1077 consensus_6831#1 TATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTA 774 ***************** ****** ********** *************** ******** consensus_6831#0 CTGGGCCACAACTAAAAACCTGTTAATGGGC-TGCTCAAGAGCAATGAATTGTGTTATTG 1136 consensus_6831#1 CTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT-- 832 ***** * ********** *** ******* ********* *** ****** * *** consensus_6831#0 GTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGA 1196 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 ATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT 1234 consensus_6831#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||