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Oryza sativa
cluster # 6831 cluster # 6831       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6831#0 length = 1234 sequences # 3  
consensus_6831#1 length = 832 sequences # 1  

consensusID : consensus_6831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1234
fasta sequence
                              [ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTAGCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT]

[+] EMBL AK063329             [ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTAGCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT]
[+] EMBL CB655625             [                                                                                  TGGTGGCGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTG                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB655626             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGT ]


>consensus_6831#0 ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTA GCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGA TACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGT CGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGA TCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGG GGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACA TCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGA GGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAA GACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGG ACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCA TTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCC CTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGT TTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTA TATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGG GCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCG TCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCA CCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCT ATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTG GGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCC AATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGT ACTCTCATTTTTTTCAAATGCAAATCTACCAGTT



consensusID : consensus_6831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 832
fasta sequence
                              [GTAACTAGTACATAATTGTGTCATGTTTTTAAAATAGAAAATATAGCATTTTTGGTACTTTCTTGAAGACGATAAAATTACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGTACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTCTATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTACTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT]

[+] EMBL CB096831             [GTAACTAGTACATAATTGTGTCATGTTTTTAAAATAGAAAATATAGCATTTTTGGTACTTTCTTGAAGACGATAAAATTACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGTACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTCTATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTACTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT]


>consensus_6831#1 GTAACTAGTACATAATTGTGTCATGTTTTTAAAATAGAAAATATAGCATTTTTGGTACTT TCTTGAAGACGATAAAATTACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGTACTAC TGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTG AGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATG GAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGT GTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCT GCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGT AAGGAGAAAGAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGG GCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAA CGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGA GCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTCACCGAT GCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTCTATGTC CACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTACTGGGN CNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6831#0      ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTA 60
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      GCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGA 120
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      TACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGT 180
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      CGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGA 240
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      TCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGG 300
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      GGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACA 360
consensus_6831#1      -GTAACTAGTACATAATTGTGT-CATGTTTTTAAAATAGAAAAT-ATAGCATTTTTGGTA 57
                       * *    **     *    ** *  *     *   * *          *    *    *

consensus_6831#0      TCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGA 420
consensus_6831#1      CTTTCTTGAAGACGATAAAATT--ACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGT 115
                          **  ***      *  *   **    *    *   ** *       *   *** * 

consensus_6831#0      GGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAA 480
consensus_6831#1      ACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAA 175
                             * ***************************************************

consensus_6831#0      GACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGG 540
consensus_6831#1      GACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGG 235
                      ************************************************************

consensus_6831#0      ACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCA 600
consensus_6831#1      ACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCA 295
                      ************************************************************

consensus_6831#0      TTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCC 660
consensus_6831#1      TTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCC 355
                      ************************************************************

consensus_6831#0      CTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGT 720
consensus_6831#1      CTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGT 415
                      ************************************************************

consensus_6831#0      TTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTA 780
consensus_6831#1      TTTGTAAGGAGAAAGAA-TCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTA 474
                      ***************** ******************************************

consensus_6831#0      TATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGG 840
consensus_6831#1      TATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGG 534
                      ************************************************************

consensus_6831#0      GCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCG 900
consensus_6831#1      GCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCG 594
                      ************************************************************

consensus_6831#0      TCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTT-GATTGGGAGCTC 959
consensus_6831#1      TCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTC 654
                      *********************************************** ************

consensus_6831#0      ACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTC 1019
consensus_6831#1      ACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTC 714
                      ******************************************* ********* ******

consensus_6831#0      TATGTCCACGAATCTGGCCCATAC-AAAACCACTGATGAGTTTTGGGATGG-CGAGATTA 1077
consensus_6831#1      TATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTA 774
                      ***************** ****** ********** *************** ********

consensus_6831#0      CTGGGCCACAACTAAAAACCTGTTAATGGGC-TGCTCAAGAGCAATGAATTGTGTTATTG 1136
consensus_6831#1      CTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT-- 832
                      ***** * ********** *** *******  ********* *** ****** * ***  

consensus_6831#0      GTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGA 1196
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      ATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT 1234
consensus_6831#1      --------------------------------------
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)