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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1359 fasta sequence
[CATAAAAGAAGTCCTACAACTGAAACCATATGTGATGGAGATCTGCTAATCCCAGCCCAAATTAGAGACAGAATCAAGTCATCAACACATGATTTATTATGGAAGAAGAAATTAACCTCAAGACATACACACTCTTACTTTCTCTCTCGTCCTACTAAGTGTTGTGGAAGAGGGAAGATTAGTCGGCGGCGAAGACGGCGCCGTTGAGCTGGAAGGCGCCGGTGAAGAAGGCCGGCCAGCAGAGGTAGGTGGAGAGGATGCTGCTGACGGTGGAAGCGCCCATGAGCATGTTCATCACCACGATCTGCAGCTGGATGGCCTCCAGCGGCGACGCGCCGCCCATGATGAGGCCGGTCATGGCGCCCGGCAGCGCGATCAGCCCCACCGTCTTGGCGTTGTCGATCACCGGCGACAGCGCGATCACCAGCGACCTCCTCACCTGCCGCGCCGTCGCCTGCCGCGGCGTCGCGCCCAGCGCCAGCGCCGTCTCCATCACCCCTCGCTGCATCCCCACGTCCTCCCTCAGCTTCTTCATCGTCACCCCGGTCACCGTCATCGCGTTCCCGACCATCATCCCGGCCACCGGGATGATGTACCGCGGCGTGAACGGGAACACCCGGAGCGCCACGAGGAGGGCCATGGTGACGGAGGTGCCGGCGAGGATGGAGACGGCGGCGATGTGCTTCCCCCGCGGGACGTGGCGGGCGCGCTGCCCCGCGGTGTAGCCGGCGACGGTGACCATGAAGAGGTAGGCGAGGAGGATCCAGGCGGCGCTCTTCTGGGTGAAGATGAACTGGAGGACGAAGCCGATGACGGAGAGCTGGAGGAACGCCCGCGCCATGGCGTACAGCATCTCGCCCTCGAGCCCCAGCCGCTGCGTGAAGCTCAGCGCCACCGCCATCGCCACCACCGCCGTCGCCGCCACCGGCTTCAGCATGCCCACCAAGAACTCCCGCCAGAACCCCGGCGCGCCCGGGTCCACCTGATTCACCACCACCAGCAGACGCTGCAGCAGCGCCGCCATGCTCGCCATCATGCGTTCCAGAGCGAGGCGAGGCGACCGAGCGCGTTGATGAAGACGAGGAGGAGTTGGTGGTGGTGAGCGAGCGGAAGCGGGGGAGGCGGCGAGCGAGGGAGGCGACTACGCCTTCTTCTTCGGCTTTCGCGGTGTTTCTCTCTGCTTCCTTGGCGGCGTCGGCGTGGCGTTTGGGTGCTACGTGGGGAAGGCACGCTGGATGGTGGGGCCCACGCTGCAGTGGCACTACAGTATTTGTGTTTTTTTTAATCTTGTCAGTTGATGAAGAACTACAGTGCCCGCCTCTCTTTTCCATCTTTTATTAAAAAAAATTAATATCGTCA]
[+] EMBL AK109043 [CATAAAAGAAGTCCTACAACTGAAACCATATGTGATGGAGATCTGCTAATCCCAGCCCAAATTAGAGACAGAATCAAGTCATCAACACATGATTTATTATGGAAGAAGAAATTAACCTCAAGACATACACACTCTTACTTTCTCTCTCGTCCTACTAAGTGTTGTGGAAGAGGGAAGATTAGTCGGCGGCGAAGACGGCGCCGTTGAGCTGGAAGGCGCCGGTGAAGAAGGCCGGCCAGCAGAGGTAGGTGGAGAGGATGCTGCTGACGGTGGAAGCGCCCATGAGCATGTTCATCACCACGATCTGCAGCTGGATGGCCTCCAGCGGCGACGCGCCGCCCATGATGAGGCCGGTCATGGCGCCCGGCAGCGCGATCAGCCCCACCGTCTTGGCGTTGTCGATCACCGGCGACAGCGCGATCACCAGCGACCTCCTCACCTGCCGCGCCGTCGCCTGCCGCGGCGTCGCGCCCAGCGCCAGCGCCGTCTCCATCACCCCTCGCTGCATCCCCACGTCCTCCCTCAGCTTCTTCATCGTCACCCCGGTCACCGTCATCGCGTTCCCGACCATCATCCCGGCCACCGGGATGATGTACCGCGGCGTGAACGGGAACACCCGGAGCGCCACGAGGAGGGCCATGGTGACGGAGGTGCCGGCGAGGATGGAGACGGCGGCGATGTGCTTCCCCCGCGGGACGTGGCGGGCGCGCTGCCCCGCGGTGTAGCCGGCGACGGTGACCATGAAGAGGTAGGCGAGGAGGATCCAGGCGGCGCTCTTCTGGGTGAAGATGAACTGGAGGACGAAGCCGATGACGGAGAGCTGGAGGAACGCCCGCGCCATGGCGTACAGCATCTCGCCCTCGAGCCCCAGCCGCTGCGTGAAGCTCAGCGCCACCGCCATCGCCACCACCGCCGTCGCCGCCACCGGCTTCAGCATGCCCACCAAGAACTCCCGCCAGAACCCCGGCGCGCCCGGGTCCACCTGATTCACCACCACCAGCAGACGCTGCAGCAGCGCCGCCATGCTCGCCATCATGCGTTCCAGAGCGAGGCGAGGCGACCGAGCGCGTTGATGAAGACGAGGAGGAGTTGGTGGTGGTGAGCGAGCGGAAGCGGGGGAGGCGGCGAGCGAGGGAGGCGACTACGCCTTCTTCTTCGGCTTTCGCGGTGTTTCTCTCTGCTTCCTTGGCGGCGTCGGCGTGGCGTTTGGGTGCTACGTGGGGAAGGCACGCTGGATGGTGGGGCCCACGCTGCAGTGGCACTACAGTATTTGTGTTTTTTTTAATCTTGTCAGTTGATGAAGAACTACAGTGCCCGCCTCTCTTTTCCATCTTTTATTAAAAAAAATTAATATCGTCA]
consensusID : consensus_6832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1142 fasta sequence
[TTTTTCATCAACACATGATTTATTATGGAAGAAGAAATTAACCTCAAGACATACACACTCTTACTTTCTCTCTCGTCCTACTAAGTAAGTACTCAACAACTAATTACTACTACTACTAATCACTAAGCAGTAATCCATAATGAATCAAAATGCAAGGTGTTGTGGAAGAGGGAAGATTAGTCGGCGGCGAAGACGGCGTCGTTGAGCTGGAAGGCGCCGGTGAAGAAGGCCGGCCAGCAGAGGTAGGTGGAGAGGATGCTGCTGACGGTGGAAGCGCCCATGAGCATGTTCATCACCACGATCTGCAGCTGGATGGCCTCCAGCGGCGACGCGCCGCACCATGATGAGGCCGGTCATGGCGCCCGGAAGCGCGATCAGCCCCACCGTCTTGGCGTTGTCGATCANCGGCGACAG-GCGATCACCAGCGACCTCCTCACCTGCNGCGCCGTCGCCTGCCGCGGNGTCGCGCCCAGNGCCAG-GCACGTCTCCACNACCCCTCGCTGGATCCCCACGTCCTCCCTCAGNTTCTTCATCGTCACCCCGGTCACCGTCATCGCGTTCCCGACGATCATCCCGGCCAACGGGATGATGTAACCGCGGCGTGNAAGNGGAACAACCCGGAAGCGCAANGAGGAAGGGCCAATGGTGACGGAGGTGCCGGAGAAGGATTGANGACGGGNGGCGATGTGCTTCCCCCGCGGGACGTGGCGGGCGCGCTGCCCCGCGGTGTAGCCGGCGACGGTGACCATGAAGAGGTAGGCGAGGAGGATCCAGGCGGCGCTCTTCTGGGTGAAGATGAACTGGAGGACGAAGCCGATGACGGAGAGCTGGAGGAACGCCCGCGCCATGGCGTACAGCATCTCGCCCTCGAGCCCCAGCCGCTGCGTGAAGCTCAGCGCCACCGCCATCGCCACCACCGCCGTCGCCGCCACCGGCTTCAGCATGCCCACCAAGAACTCCCGCCAGAACCCCGGCGCGCCCGGGTCCACCTGATTCACCACCACCAGCAGACGCTGCAGCAGCGCCGCCATGCTCGCCATCATGCGTTCCAGAGCGAGGCGAGGCGACCGAGCGCGTTGATGAAGACGAGGAGGAGTTGGTGGTGGTGAGCGAGCGGAAGCGGGGGAGGCGGCGAGCGAGGG]
[-] EMBL AU030385 [TTTTTCATCAACACATGATTTATTATGGAAGAAGAAATTAACCTCAAGACATACACACTCTTACTTTCTCTCTCGTCCTACTAAGTAAGTACTCAACAACTAATTACTACTACTACTAATCACTAAGCAGTAATCCATAATGAATCAAAATGCAAGGTGTTGTGGAAGAGGGAAGATTAGTCGGCGGCGAAGACGGCGTCGTTGAGCTGGAAGGCGCCGGTGAAGAAGGCCGGCCAGCAGAGGTAGGTGGAGAGGATGCTGCTGACGGTGGAAGCGCCCATGAGCATGTTCATCACCACGATCTGCAGCTGGATGGCCTCCAGCGGCGACGCGCCGCACCATGATGAGGCCGGTCATGGCGCCCGGAAGCGCGATCAGCCCCACCGTCTTGGCGTTGTCGATCANCGGCGACAG GCGATCACCAGCGACCTCCTCACCTGCNGCGCCGTCGCCTGCCGCGGNGTCGCGCCCAGNGCCAG GCACGTCTCCACNACCCCTCGCTGGATCCCCACGTCCTCCCTCAGNTTCTTCATCGTCACCCCGGTCACCGTCATCGCGTTCCCGACGATCATCCCGGCCAACGGGATGATGTAACCGCGGCGTGNAAGNGGAACAACCCGGAAGCGCAANGAGGAAGGGCCAATGGTGACGGAGGTGCCGGAGAAGGATTGANGACGGGNGGCGAT ]
[-] EMBL AK069359 [ CACATGATTTATTATGGAAGAAGAAATTAACCTCAAGACATACACACTCTTACTTTCTCTCTCGTCCTACTAAGTAAGTACTCAACAACTAATTACTACTACTACTAATCACTAAGCAGTAATCCATAATGAATCAAAATGCAAGGTGTTGTGGAAGAGGGAAGATTAGTCGGCGGCGAAGACGGCGTCGTTGAGCTGGAAGGCGCCGGTGAAGAAGGCCGGCCAGCAGAGGTAGGTGGAGAGGATGCTGCTGACGGTGGAAGCGCCCATGAGCATGTTCATCACCACGATCTGCAGCTGGATGGCCTCCAGCGGCGACGCGCCGC CCATGATGAGGCCGGTCATGGCGCCCGGCAGCGCGATCAGCCCCACCGTCTTGGCGTTGTCGATCACCGGCGACAGCGCGATCACCAGCGACCTCCTCACCTGCCGCGCCGTCGCCTGCCGCGGCGTCGCGCCCAGCGCCAGCGC CGTCTCCACCACCCCTCGCTGCATCCCCACGTCCTCCCTCAGCTTCTTCATCGTCACCCCGGTCACCGTCATCGCGTTCCCGACCATCATCCCGGCCACCGGGATGATGT ACCGCGGCGTG AACGGGAAC ACCCGG AGCGCCACGAGG AGGGCC ATGGTGACGGAGGTGCCGGCG AGGATGGA GAC GGCGGCGATGTGCTTCCCCCGCGGGACGTGGCGGGCGCGCTGCCCCGCGGTGTAGCCGGCGACGGTGACCATGAAGAGGTAGGCGAGGAGGATCCAGGCGGCGCTCTTCTGGGTGAAGATGAACTGGAGGACGAAGCCGATGACGGAGAGCTGGAGGAACGCCCGCGCCATGGCGTACAGCATCTCGCCCTCGAGCCCCAGCCGCTGCGTGAAGCTCAGCGCCACCGCCATCGCCACCACCGCCGTCGCCGCCACCGGCTTCAGCATGCCCACCAAGAACTCCCGCCAGAACCCCGGCGCGCCCGGGTCCACCTGATTCACCACCACCAGCAGACGCTGCAGCAGCGCCGCCATGCTCGCCATCATGCGTTCCAGAGCGAGGCGAGGCGACCGAGCGCGTTGATGAAGACGAGGAGGAGTTGGTGGTGGTGAGCGAGCGGAAGCGGGGGAGGCGGCGAGCGAGGG]
[-] EMBL AU065686 [ aGATCCAGGCGGCGCT TTCTGGGTGAAGATGAACTGGAGGACGAAGCCGATGACGGAGAGCTGGAGGAACGCCCGCGCCATGGCGTACAGCATCTCGCCCTCGAGCCCCAGCCGCTGCGTGAAGCTCAGCGCCACCGCCATCGCCACCACCGCCGTCGCCGCCACCGGCTTCAGCATGCCCACCAAGAACTCCCGCCAGAACCCCGGCGCGCCCGGGTCCACCTGATTCACCACCACCAGCAGACGCTGCAGCAGCGCCGCCATGCTCGCCATCATGCGTTCCAGAGCGAGGCGAGGCGACCGAGCGCGTTGATGAAGACGAGGAGGAGTTGGTGGTGGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6832#0 CATAAAAGAAGTCCTACAACTGAA-ACCATATGTGATGGAG--ATCTGCTAATCCCAGCC 57
consensus_6832#1 -----------TTTTTCATCAACACATGATTTATTATGGAAGAAGAAATTAACCTCAAGA 49
* * ** * * * ** * * ***** * *** * **
consensus_6832#0 CAAATTAGAGACAGAATCAAGTCATCAACACA-TGATTTATTATGGAAGAAGAAATTA-- 114
consensus_6832#1 CATAC-ACACTCTTACTTTCTCTCTCGTCCTACTAAGTAAGTACTCAACAACTAATTACT 108
** * * * * * * ** * * * * * * ** ** ** *****
consensus_6832#0 ---ACCTCAAGACA-TACACACTCTTACTTTCTCTCTCGTCCTACTAAGTGTTGTGGAAG 170
consensus_6832#1 ACTACTACTAATCACTAAGCAGTAATCCATAATGAATCAAAATGCAAGGTGTTGTGGAAG 168
** * * ** ** ** * * * * * ** * * * ************
consensus_6832#0 AGGGAAGATTAGTCGGCGGCGAAGACGGCGCCGTTGAGCTGGAAGGCGCCGGTGAAGAAG 230
consensus_6832#1 AGGGAAGATTAGTCGGCGGCGAAGACGGCGTCGTTGAGCTGGAAGGCGCCGGTGAAGAAG 228
****************************** *****************************
consensus_6832#0 GCCGGCCAGCAGAGGTAGGTGGAGAGGATGCTGCTGACGGTGGAAGCGCCCATGAGCATG 290
consensus_6832#1 GCCGGCCAGCAGAGGTAGGTGGAGAGGATGCTGCTGACGGTGGAAGCGCCCATGAGCATG 288
************************************************************
consensus_6832#0 TTCATCACCACGATCTGCAGCTGGATGGCCTCCAGCGGCGACGCGCCGC-CCATGATGAG 349
consensus_6832#1 TTCATCACCACGATCTGCAGCTGGATGGCCTCCAGCGGCGACGCGCCGCACCATGATGAG 348
************************************************* **********
consensus_6832#0 GCCGGTCATGGCGCCCGGCAGCGCGATCAGCCCCACCGTCTTGGCGTTGTCGATCACCGG 409
consensus_6832#1 GCCGGTCATGGCGCCCGGAAGCGCGATCAGCCCCACCGTCTTGGCGTTGTCGATCANCGG 408
****************** ************************************* ***
consensus_6832#0 CGACAGCGCGATCACCAGCGACCTCCTCACCTGCCGCGCCGTCGCCTGCCGCGGCGTCGC 469
consensus_6832#1 CGACAG-GCGATCACCAGCGACCTCCTCACCTGCNGCGCCGTCGCCTGCCGCGGNGTCGC 467
****** *************************** ******************* *****
consensus_6832#0 GCCCAGCGCCAGCGCCGTCTCCATCACCCCTCGCTGCATCCCCACGTCCTCCCTCAGCTT 529
consensus_6832#1 GCCCAGNGCCAGGCACGTCTCCACNACCCCTCGCTGGATCCCCACGTCCTCCCTCAGNTT 527
****** ***** ******** *********** ******************** **
consensus_6832#0 CTTCATCGTCACCCCGGTCACCGTCATCGCGTTCCCGACCATCATCCCGGCCACCGGGAT 589
consensus_6832#1 CTTCATCGTCACCCCGGTCACCGTCATCGCGTTCCCGACGATCATCCCGGCCAACGGGAT 587
*************************************** ************* ******
consensus_6832#0 GATGTA-CCGCGGCGTGAACGGG-AACACCC--GGAGCGCCACGAGGAGGGCC--ATGGT 643
consensus_6832#1 GATGTAACCGCGGCGTGNAAGNGGAACAACCCGGAAGCGCAANGAGGAAGGGCCAATGGT 647
****** ********** * * * **** ** * ***** * ***** ** * *****
consensus_6832#0 GACGGAGGTGCCGGCGAGGA--TGGAGACGG-CGGCGATGTGCTTCCCCCGCGGGACGTG 700
consensus_6832#1 GACGGAGGTGCCGGAGAAGGATTGANGACGGGNGGCGATGTGCTTCCCCCGCGGGACGTG 707
************** ** * ** ***** ***************************
consensus_6832#0 GCGGGCGCGCTGCCCCGCGGTGTAGCCGGCGACGGTGACCATGAAGAGGTAGGCGAGGAG 760
consensus_6832#1 GCGGGCGCGCTGCCCCGCGGTGTAGCCGGCGACGGTGACCATGAAGAGGTAGGCGAGGAG 767
************************************************************
consensus_6832#0 GATCCAGGCGGCGCTCTTCTGGGTGAAGATGAACTGGAGGACGAAGCCGATGACGGAGAG 820
consensus_6832#1 GATCCAGGCGGCGCTCTTCTGGGTGAAGATGAACTGGAGGACGAAGCCGATGACGGAGAG 827
************************************************************
consensus_6832#0 CTGGAGGAACGCCCGCGCCATGGCGTACAGCATCTCGCCCTCGAGCCCCAGCCGCTGCGT 880
consensus_6832#1 CTGGAGGAACGCCCGCGCCATGGCGTACAGCATCTCGCCCTCGAGCCCCAGCCGCTGCGT 887
************************************************************
consensus_6832#0 GAAGCTCAGCGCCACCGCCATCGCCACCACCGCCGTCGCCGCCACCGGCTTCAGCATGCC 940
consensus_6832#1 GAAGCTCAGCGCCACCGCCATCGCCACCACCGCCGTCGCCGCCACCGGCTTCAGCATGCC 947
************************************************************
consensus_6832#0 CACCAAGAACTCCCGCCAGAACCCCGGCGCGCCCGGGTCCACCTGATTCACCACCACCAG 1000
consensus_6832#1 CACCAAGAACTCCCGCCAGAACCCCGGCGCGCCCGGGTCCACCTGATTCACCACCACCAG 1007
************************************************************
consensus_6832#0 CAGACGCTGCAGCAGCGCCGCCATGCTCGCCATCATGCGTTCCAGAGCGAGGCGAGGCGA 1060
consensus_6832#1 CAGACGCTGCAGCAGCGCCGCCATGCTCGCCATCATGCGTTCCAGAGCGAGGCGAGGCGA 1067
************************************************************
consensus_6832#0 CCGAGCGCGTTGATGAAGACGAGGAGGAGTTGGTGGTGGTGAGCGAGCGGAAGCGGGGGA 1120
consensus_6832#1 CCGAGCGCGTTGATGAAGACGAGGAGGAGTTGGTGGTGGTGAGCGAGCGGAAGCGGGGGA 1127
************************************************************
consensus_6832#0 GGCGGCGAGCGAGGGAGGCGACTACGCCTTCTTCTTCGGCTTTCGCGGTGTTTCTCTCTG 1180
consensus_6832#1 GGCGGCGAGCGAGGG--------------------------------------------- 1142
***************
consensus_6832#0 CTTCCTTGGCGGCGTCGGCGTGGCGTTTGGGTGCTACGTGGGGAAGGCACGCTGGATGGT 1240
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 GGGGCCCACGCTGCAGTGGCACTACAGTATTTGTGTTTTTTTTAATCTTGTCAGTTGATG 1300
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 AAGAACTACAGTGCCCGCCTCTCTTTTCCATCTTTTATTAAAAAAAATTAATATCGTCA 1359
consensus_6832#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||