These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [ACATACCATCACATTCCGTCAGGTAGACATGCCAAAATAAATTCCATTGTAGTTTAAGGCATTCCATCTTACTTTAGATTTGTTGGTTTTCAAAGTCTGAGATGATGGTATGCATTATATGTTGCCAACCCACCGCCACCTCAGCTCAATCATGCATGATATGCACACAATCCCTATATATATCTGTATAGAATAGGCATATATATGTCCAAGGTCTACATGCACAACTACTGTCATCTTACTATGGACCATTGCATATTCTTCTCCTCATTCAAACCACCCAGGCAATGCAAGACAAAACTATTTGTGGTAGGACTAGCATCAGGGCTTGGGCAATATACTGAAGTAGTAAGGGAAGCTCAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTTTGCCACTAGAAGATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAAGCCTATTTGAACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATCAGATAAATAGCTAAGAGACTACGCACCTTATGTTCTACTTTTCTTATTTAGTTTCATGGACC] [+] EMBL AK062332 [ACATACCATCACATTCCGTCAGGTAGACATGCCAAAATAAATTCCATTGTAGTTTAAGGCATTCCATCTTACTTTAGATTTGTTGGTTTTCAAAGTCTGAGATGATGGTATGCATTATATGTTGCCAACCCACCGCCACCTCAGCTCAATCATGCATGATATGCACACAATCCCTATATATATCTGTATAGAATAGGCATATATATGTCCAAGGTCTACATGCACAACTACTGTCATCTTACTATGGACCATTGCATATTCTTCTCCTCATTCAAACCACCCAGGCAATGCAAGACAAAACTATTTGTGGTAGGACTAGCATCAGGGCTTGGGCAATATACTGAAGTAGTAAGGGAAGCTCAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTTTGCCACTAGAAGATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAAGCCTATTTGAACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATCAGATAAATAGCTAAGAGACTACGCACCTTATGTTCTACTTTTCTTATTTAGTTTCATGGACC] consensusID : consensus_6840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 479 fasta sequence [GGCCGCATCGGCGCTGTCCTCTGGTACCAGGGGGAGAGCGACACCGTGCGCTGGGCCGACGCCAACGAGTACGCCCGCCGGATGGCCATGCTCGTCCGCAACCTGCGCGCCGATCTCGCCATGCCACACCTTCTCCTCATCCAGGTAGGACTAGCATCAGGGCTTGGGCAATATACTGAAGTAGTAAGGGAAGCTCAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTTTGCCACTAGAAGATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAAGCCTATTTGAACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATCAGATAAATAGCTAAGAGACTACGCACCTTATGTTCTACTTTTCTTATTTAGTTTCATGGACCACTCATTCTTATGATTATTGAATTGGCTTGGTATAAAAAAAA] [+] EMBL AU030601 [GGCCGCATCGGCGCTGTCCTCTGGTACCAGGGGGAGAGCGACACCGTGCGCTGGGCCGACGCCAACGAGTACGCCCGCCGGATGGCCATGCTCGTCCGCAACCTGCGCGCCGATCTCGCCATGCCACACCTTCTCCTCATCCAGGTAGGACTAGCATCAGGGCTTGGGCAATATACTGAAGTAGTAAGGGAAGCTCAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTTTGCCACTAGAAGATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAAGCCTATTTGAACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATCAGATAAATAGCTAAGAGACTACGCACCTTATGTTCTACTTTTCTTATTTAGTTTCATGGACCACTCATTCTTATGATTATTGAATTGGCTTGGTATAAAAAAAA] [+] EMBL AK072880 [ GTCCTCTGGTACCAGGGGGAGAGCGACACCGTGCGCTGGGCCGACGCCAACGAGTACGCCCGCCGGATGGCCATGCTCGTCCGCAACCTGCGCGCCGATCTCGCCATGCCACACCTTCTCCTCATCCAGGTAGGACTAGCATCAGGGCTTGGGCAATATACTGAAGTAGTAAGGGAAGCTCAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTTTGCCACTAGAAGATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAAGCCTATTTGAACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATCAGATAAATAGCTAAGAGACTACGCACCTTATGTTCTACTTTTCTTATTTAGTTTCATGGACCACTCATTCTTATGATTATTGAATTGGCTTGGTATAAtt ] consensusID : consensus_6840#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [TCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGGCATNTGTTGGCNCAANCCTTTTTGAACTANGGNACTTCCNCGCTCTAGNCCNCNCTGTGTTGTTTTNCTTTTATCNGNTAAATANCTAAGNGNCTACGCCCCTTNTGTNCNNCTTTTCTTATTTAGTTTCNTGGNCCNCTCNTNCTTNTGNTTNTTGAATTGGCTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097543 [TCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGGCATNTGTTGGCNCAANCCTTTTTGAACTANGGNACTTCCNCGCTCTAGNCCNCNCTGTGTTGTTTTNCTTTTATCNGNTAAATANCTAAGNGNCTACGCCCCTTNTGTNCNNCTTTTCTTATTTAGTTTCNTGGNCCNCTCNTNCTTNTGNTTNTTGAATTGGCTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6840#1 ------------------------------------------------------------ consensus_6840#2 ------------------------------------------------------------ consensus_6840#0 ACATACCATCACATTCCGTCAGGTAGACATGCCAAAATAAATTCCATTGTAGTTTAAGGC 60 consensus_6840#1 ------------------------------------------------------------ consensus_6840#2 ------------------------------------------------------------ consensus_6840#0 ATTCCATCTTACTTTAGATTTGTTGGTTTTCAAAGTCTGAGATGATGGTATGCATTATAT 120 consensus_6840#1 ------------------------------------------GGCCGCATCGGCGCTGTC 18 consensus_6840#2 ------------------------------------------------------------ consensus_6840#0 GTTGCCAACCCACCGCCACCTCAGCTCAATCATGCATGATATGCACACAATCCCTATATA 180 consensus_6840#1 CTCTGGTACCAGGGGGAGAGCGACACCGTGCGCTGGGCCGACGCCAACGAGTACGCCCGC 78 consensus_6840#2 ------------------------------------------------------------ consensus_6840#0 TATCTGTATAGAATAGGCATATATATGTCCAAGGTCTACATGCACAACTACTGTCATCTT 240 consensus_6840#1 CGGATGGCCATGCTCGTCCGCAACCTGCGCGCCGATCTCGCCATGCCACACCTTCTC--- 135 consensus_6840#2 ------------------------------------------------------------ consensus_6840#0 ACTATGGACCATTGCATATTCTTCTCCTCATTCAAACCACCCAGGCAATGCAAGACAAAA 300 consensus_6840#1 CTCATCCAGGTAGGACTAGCATCAGGGCTTGGGCAATATACTGAAGTAGTAAGGGAAGCT 195 consensus_6840#2 ------------------------------------------------------------ consensus_6840#0 CTATTTGTGGTAGGACTAGCATCAGGGCTTGGGCAATATACTGAAGTAGTAAGGGAAGCT 360 consensus_6840#1 CAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTTTGCCACTAGAA 255 consensus_6840#2 ------------------------------------------------------------ consensus_6840#0 CAGAAAGGGATCAAACTTCGAAACGTGAGATTTGTTGATGCAAAGGGTTTGCCACTAGAA 420 consensus_6840#1 GATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAA 315 consensus_6840#2 --------TCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGGCATNTGTTGGCNCAA 52 consensus_6840#0 GATGGCCATCTGCACCTTAGCACCCAAGCGCAAGTCCAGCTTGGACATATGTTGGCTCAA 480 ************************************ *** ******* *** consensus_6840#1 GCCTATTTGAACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATC 375 consensus_6840#2 NCCTTTTTGAACTANGGNACTTCCNCGCTCTAGNCCNCNCTGTGTTGTTTTNCTTTTATC 112 consensus_6840#0 GCCTATTTGAACTATGGTACTTCCACGCTCTAGTCCTCTCTGTGTTGTTTTTCTTTTATC 540 *** ********* ** ****** ******** ** * ************ ******** consensus_6840#1 AGATAAATAGCTAAGAGACTACGCACCTTATGTTCTACTTTTCTTATTTAGTTTCATGGA 435 consensus_6840#2 NGNTAAATANCTAAGNGNCTACGCCCCTTNTGTNCNNCTTTTCTTATTTAGTTTCNTGGN 172 consensus_6840#0 AGATAAATAGCTAAGAGACTACGCACCTTATGTTCTACTTTTCTTATTTAGTTTCATGGA 600 * ****** ***** * ****** **** *** * ****************** *** consensus_6840#1 CCACTCATTCTTATGATTATTGAATTGGCTTGGTATAAAAAAAA---------------- 479 consensus_6840#2 CCNCTCNTNCTTNTGNTTNTTGAATTGGCTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAA 232 consensus_6840#0 CC---------------------------------------------------------- 602 ** consensus_6840#1 ---------------------- consensus_6840#2 AAAAAAAAAAAAAAAAAAAAAA 254 consensus_6840#0 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||