cluster # 6852

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Oryza sativa
cluster # 6852 cluster # 6852 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6852#0 length = 320 sequences # 3

consensus_6852#1 length = 279 sequences # 1

consensusID : consensus_6852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 320
fasta sequence

                              [AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACGCCGACGT-CTGGCGCGCGCGCTGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGGAGTGGCCGTCCATGGCGGGGCACCCNGGGCTGCTGTCCGGTNGTCCCGCCNCGCCGGCTCTTCNCCGACGCGTTCCCGTTTCCCGCGACCTAACGNCGGGAAGCTCGGCGGCGGCGGCG]

[+] EMBL AU063883             [AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACGCCGACGT CTGGCGCGCGCGCTGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTNGCGCGCGCTCTGCCTCGCGGAGTNGCCGTCCATNGCGGGGCACCCCGGGCTGCTGTCCGGTNGTCCCGCCNCGCCGGCTCTTCNCCGACGCGTTCCCGTTTCCCGCGACCTAACGNC                      ]
[+] EMBL AU065548             [AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACGCCGACGTNCTGGCGCGCGCGCNGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTGGCGCGCGCNCTGCCTCGCGGAGTGGCCGTTCATGGCGGGGCA CCNGGGC                                                                                         ]
[+] EMBL AU069329             [               ATGGCGCCAGGGAGAGAAGAAGAGAAAATNGTGGCGACTACTACNATAGAGGACCTGCACGCCGACGT CTGGCGCGCGCNCTGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGNAGTGGCCGTCCATGGCGGGGCACCCNGGGCTGCTGTCC GTGGTCCCNCCGCGCCGGCTCTTCGCCGACGCGTTCCCG TTCCCGCGACCGGACGCCGGGAAGCTCGGCGGCGGCGGCG]




>consensus_6852#0
AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACG
ATAGAGGACCTGCACGCCGACGTCTGGCGCGCGCGCTGCGGCGGCTGGACGGGCGGTCGC
TGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGT
GGCGCGCGCTCTGCCTCGCGGAGTGGCCGTCCATGGCGGGGCACCCNGGGCTGCTGTCCG
GTNGTCCCGCCNCGCCGGCTCTTCNCCGACGCGTTCCCGTTTCCCGCGACCTAACGNCGG
GAAGCTCGGCGGCGGCGGCG

consensusID : consensus_6852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [ATNGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACNNCGACGTNTGNGCGCGCNCGTGNNGCNCTTGGNACGGGCGGTCGCTGGCGGCGGCGAGCTGCNCACGGCGGGCTCCGGGCGCTCGCCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGGTAGTGGCCGTCCATGGCGGGGCACCGGGCNTGCTGTCCGTGGTCCCGCCGCGCCGCTCTTCGCCGACGGTTCCCGTTCCCGCGCCCGGACGCNGNG]

[+] EMBL AU063434             [ATNGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACNNCGACGTNTGNGCGCGCNCGTGNNGCNCTTGGNACGGGCGGTCGCTGGCGGCGGCGAGCTGCNCACGGCGGGCTCCGGGCGCTCGCCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGGTAGTGGCCGTCCATGGCGGGGCACCGGGCNTGCTGTCCGTGGTCCCGCCGCGCCGCTCTTCGCCGACGGTTCCCGTTCCCGCGCCCGGACGCNGNG]




>consensus_6852#1
ATNGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCAC
NNCGACGTNTGNGCGCGCNCGTGNNGCNCTTGGNACGGGCGGTCGCTGGCGGCGGCGAGC
TGCNCACGGCGGGCTCCGGGCGCTCGCCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCG
CGGTAGTGGCCGTCCATGGCGGGGCACCGGGCNTGCTGTCCGTGGTCCCGCCGCGCCGCT
CTTCGCCGACGGTTCCCGTTCCCGCGCCCGGACGCNGNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6852#0      AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACG 60
consensus_6852#1      ---------------ATNGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACG 45
                                     ** ******************************************

consensus_6852#0      ATAGAGGACCTGCACGCCGACGTCTGG-CGCGCGCGCTGCGGCGGCTGGACGGGCGGTCG 119
consensus_6852#1      ATAGAGGACCTGCACNNCGACGTNTGNGCGCGCNCGTGNNGCNCTTGGNACGGGCGGTCG 105
                      ***************  ****** **  ***** **    *      * ***********

consensus_6852#0      CTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACG 179
consensus_6852#1      CTGGCGGCGGCGAGCTGCNC-ACGGCGGG-CTCCGGGCGCTCGCCG--GACCCGGAGACG 161
                      ****************** * ******** ****************  ************

consensus_6852#0      TGGCGCGCGCTCTGCCTCGCGG-AGTGGCCGTCCATGGCGGGGCACCCNGGGCTGCTGTC 238
consensus_6852#1      TGGCGCGCGCTCTGCCTCGCGGTAGTGGCCGTCCATGGCGGGGCACC-GGGCNTGCTGTC 220
                      ********************** ************************  **  *******

consensus_6852#0      CGGTNGTCCCGCCNCGCCGGCTCTTCNCCGACGCGTTCCCGTTTCCCGCGACCTAACGNC 298
consensus_6852#1      CG-TGGTCCCGCCGCGCCG-CTCTTCGCCGACG-GTTCCCGTT-CCCGCGCCCGGACGCN 276
                      ** * ******** ***** ****** ****** ********* ****** **  ***  

consensus_6852#0      GGGAAGCTCGGCGGCGGCGGCG 320
consensus_6852#1      GNG------------------- 279
                      * *