These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1532 fasta sequence [TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACTTTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTTGAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTGCCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATTGCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTACATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATGTCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGTGGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCAGAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAGAAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAAGTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAAGATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGGATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGATTTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAGTTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTTCATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTGGACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGACCTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCCACAGCAAGGGATTGAGCTGTCAAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCATAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG] [+] EMBL AK065600 [TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACTTTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTTGAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTGCCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATTGCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTACATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATGTCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGTGGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCAGAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAGAAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAAGTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAAGATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGGATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGATTTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAGTTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTTCATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTGGACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGACCTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCCACAGCAAGGGATTGAGCTGTCAAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCATAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG] [+] EMBL AK103165 [TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACTTTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTTGAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTGCCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATTGCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTACATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATGTCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGTGGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCAGAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAGAAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAAGTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAAGATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGGATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGATTTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAGTTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTTCATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTGGACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGACCTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCCACAGCAAGGGATTGAGCTGTCAAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCATAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG] consensusID : consensus_6854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TTACANCCCCAGGAAGCACTCCCACAGCAAGGGATTGAGCTNTCAAGATCCACCAGCGACGGGTNTGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCNTAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATAAAAAAAAAAAAAAAAA] [+] EMBL AU077905 [TTACANCCCCAGGAAGCACTCCCACAGCAAGGGATTGAGCTNTCAAGATCCACCAGCGACGGGTNTGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCNTAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATAAAAAAAAAAAAAAAAA] consensusID : consensus_6854#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [CCGGTTTTCTTGACTCCCAGAATCAGATGTCCATCCGTCAGCATTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGCTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCCATAGTTTCAAATCTGTGTCTCCACGACGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTCGGTGAACTCTGAATTGTTAGGTAGGGAAAGACCACGTTGATTCACTTCGTGGTGCATCCCAAATGGTTGTAATTTTGCTCTCAGATGNCCATGGAATCAATCAGAGTTGATATATCTTCACCCTCCTGGGTTAATCCCCAAAAAAAAAA] [+] EMBL BM420309 [CCGGTTTTCTTGACTCCCAGAATCAGATGTCCATCCGTCAGCATTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGCTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCCATAGTTTCAAATCTGTGTCTCCACGACGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTCGGTGAACTCTGAATTGTTAGGTAGGGAAAGACCACGTTGATTCACTTCGTGGTGCATCCCAAATGGTTGTAATTTTGCTCTCAGATGNCCATGGAATCAATCAGAGTTGATATATCTTCACCCTCCTGGGTTAATCCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6854#0 TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACT 60 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 TTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTT 120 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTG 180 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 CCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATT 240 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTAC 300 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 ATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATG 360 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 TCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGT 420 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCA 480 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAG 540 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 AAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAA 600 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAA 660 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGG 720 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 ATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGAT 780 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 TTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAG 840 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 TTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTT 900 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 CATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTG 960 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGAC 1020 consensus_6854#1 ------------------------------------------------------------ consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 CTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCC-ACAGCAAGGGATTGAGCTGTC 1079 consensus_6854#1 ----------------TTACANCCCCAGGAAGCACTCCCACAGCAAGGGATTGAGCTNTC 44 consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 AAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATC 1139 consensus_6854#1 AAGATCCACCAGCGACGGGTNTGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATC 104 consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGT 1199 consensus_6854#1 GCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGT 164 consensus_6854#2 ------------------------------------------------------------ consensus_6854#0 GGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCC--AAATCAATT-- 1255 consensus_6854#1 GGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCC--AAATCAATT-- 220 consensus_6854#2 ------------------------------CCGGTTTTCTTGACTCCCAGAATCAGATGT 30 * **** ********** ***** * consensus_6854#0 CCATCC-TCAGC-TTCTTTCAGATGAATGAAAAATTGTAAATGGTCCG-TGTAGATTGTC 1312 consensus_6854#1 CCATCC-TCAGC-TTCTTTCAGATGAATGAAAAATTGTAAATGGTCCG-TGTAGATTGTC 277 consensus_6854#2 CCATCCGTCAGCATTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGCTGTAGATTGTC 90 ****** ***** *********************************** *********** consensus_6854#0 TCGTTTTCCATCGGTTTCTGGTCCTCC-ATAGTTTCAAATCT-TGTCTC---AGAGATGG 1367 consensus_6854#1 TCGTTTTCCATCGGTTTCTGGTCCTCC-NTAGTTTCAAATCT-TGTCTC---AGAGATGG 332 consensus_6854#2 TCGTTTTCCATCGGTTTCTGGTCCTCCCATAGTTTCAAATCTGTGTCTCCACGACGATGG 150 *************************** ************* ****** ***** consensus_6854#0 TTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTT-GGTGAACTCTGAATTGTTAG 1426 consensus_6854#1 TTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTT-GGTGAACTCTGAATTGTTAG 391 consensus_6854#2 TTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTCGGTGAACTCTGAATTGTTAG 210 *************************************** ******************** consensus_6854#0 GTAGGGAAAGA--GAGTTGATTCA-TTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTC 1483 consensus_6854#1 GTAGGGAAAGA--GAGTTGATTCA-TTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTC 448 consensus_6854#2 GTAGGGAAAGACCACGTTGATTCACTTCGTGGTGCATCCCAAATGGTTGTAATTTTGCTC 270 *********** ********* ************** ******************** consensus_6854#0 TCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG----------- 1532 consensus_6854#1 TCAGATGACAATGGAATCAATCAGAGGTTGATATAAAAAAAAAAAAAAAAA--------- 499 consensus_6854#2 TCAGATGNCCATGGAATCAATCAGAG-TTGATATATCTTCACCCTCCTGGGTTAATCCCC 329 ******* * **************** ******** * consensus_6854#0 ---------- consensus_6854#1 ---------- consensus_6854#2 AAAAAAAAAA 339 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||