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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1742 fasta sequence
[CGCCGCGACGTCCAGGTCACACAGGTTCTTTGGAACGGGAAAGGGAGCAAAAGGCCGAATCTTTTCCGCTGTTGCTGCTCCTCCTTTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTAAGTAATATCATGCATTGATGTTTATTCGGTGCTACAGAGAAAACAATATCATACATGTTTCCTTCTCAGGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTCATCTGCTGAGGTAACCATTTGCTCGGTTAAAGTTTTTTTAGTCACTAAGATGAGTGATGCATAGTCTTGTTGGTTGCATTGTCATAATGGCATCCGGGTTTTACATTTTTTAAAAAATATTGAGTGTACTCTGATGCTTTTTCTATAGTAAAAATGCACATTGCACACGAGCCGATGTCCGATTTTAAAAGAAAACAAAAATTTCAGGTTCATCACAATCACATGTTAGCTAATGTAATACTAAAAATTTTCATGTCAAAGTTATCTCTAACGTGTTTTACCTAACAACCTTGTGATGCTTCTCCTGCAGAATGAGACTCTTGATGTCATTATCAAAAGTTTAGTAGTCAACTTCTTTCTTCAGTTTGTTTTGTCTGGGTAGATAAGTGACCTTGTTTGGTACCATGCCATTGTCAGTACAGCAGTATGATACCTAAAACAAAGAACCTGTATGTTATAATTAAGTGTATTGTCTTGTTTGGTTGGTTGAGACAATACTATTTAGCGGGTTATACTCAGAATTTTTTTGCAGTAAACTGACGCTTTAATCTATCAGTTTGCTCTGCCTTGCTCATATTGCATTTGCGTGTGGCTGTTCAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA]
[+] EMBL AK066540 [CGCCGCGACGTCCAGGTCACACAGGTTCTTTGGAACGGGAAAGGGAGCAAAAGGCCGAATCTTTTCCGCTGTTGCTGCTCCTCCTTTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTAAGTAATATCATGCATTGATGTTTATTCGGTGCTACAGAGAAAACAATATCATACATGTTTCCTTCTCAGGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTCATCTGCTGAGGTAACCATTTGCTCGGTTAAAGTTTTTTTAGTCACTAAGATGAGTGATGCATAGTCTTGTTGGTTGCATTGTCATAATGGCATCCGGGTTTTACATTTTTTAAAAAATATTGAGTGTACTCTGATGCTTTTTCTATAGTAAAAATGCACATTGCACACGAGCCGATGTCCGATTTTAAAAGAAAACAAAAATTTCAGGTTCATCACAATCACATGTTAGCTAATGTAATACTAAAAATTTTCATGTCAAAGTTATCTCTAACGTGTTTTACCTAACAACCTTGTGATGCTTCTCCTGCAGAATGAGACTCTTGATGTCATTATCAAAAGTTTAGTAGTCAACTTCTTTCTTCAGTTTGTTTTGTCTGGGTAGATAAGTGACCTTGTTTGGTACCATGCCATTGTCAGTACAGCAGTATGATACCTAAAACAAAGAACCTGTATGTTATAATTAAGTGTATTGTCTTGTTTGGTTGGTTGAGACAATACTATTTAGCGGGTTATACTCAGAATTTTTTTGCAGTAAACTGACGCTTTAATCTATCAGTTTGCTCTGCCTTGCTCATATTGCATTTGCGTGTGGCTGTTCAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA]
consensusID : consensus_686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 995 fasta sequence
[TTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGCGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTATCCACACTCACCGATGGGTCAGCAGACAAAGTTTCATCTGCTGAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA]
[+] EMBL AK060752 [TTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGCGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTATCCACACTCACCGATGGGTCAGCAGACAAAGTTTCATCTGCTGAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_686#0 CGCCGCGACGTCCAGGTCACACAGGTTCTTTGGAACGGGAAAGGGAGCAAAAGGCCGAAT 60
consensus_686#1 ------------------------------------------------------------
consensus_686#0 CTTTTCCGCTGTTGCTGCTCCTCCTTTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAG 120
consensus_686#1 -------------------------TTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAG 35
***********************************
consensus_686#0 TAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAA 180
consensus_686#1 TAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAA 95
************************************************************
consensus_686#0 GAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAA 240
consensus_686#1 GAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAA 155
************************************************************
consensus_686#0 AACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAG 300
consensus_686#1 AACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAG 215
************************************************************
consensus_686#0 CTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTG 360
consensus_686#1 CTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTG 275
************************************************************
consensus_686#0 CAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTT 420
consensus_686#1 CAAGGACAAGTTCCTCGCGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTT 335
***************** ******************************************
consensus_686#0 TGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGT 480
consensus_686#1 TGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGT 395
************************************************************
consensus_686#0 GGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGA 540
consensus_686#1 GGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGA 455
************************************************************
consensus_686#0 GGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGA 600
consensus_686#1 GGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGA 515
************************************************************
consensus_686#0 TGCTGTAACTGTAAGTAATATCATGCATTGATGTTTATTCGGTGCTACAGAGAAAACAAT 660
consensus_686#1 TGCTGTAACTGTA----------------------------------------------- 528
*************
consensus_686#0 ATCATACATGTTTCCTTCTCAGGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTC 720
consensus_686#1 -------------------------TCCACACTCACCGATGGGTCAGCAGACAAAGTTTC 563
*************** *******************
consensus_686#0 ATCTGCTGAGGTAACCATTTGCTCGGTTAAAGTTTTTTTAGTCACTAAGATGAGTGATGC 780
consensus_686#1 ATCTGCTGAGG------------------------------------------------- 574
***********
consensus_686#0 ATAGTCTTGTTGGTTGCATTGTCATAATGGCATCCGGGTTTTACATTTTTTAAAAAATAT 840
consensus_686#1 ------------------------------------------------------------
consensus_686#0 TGAGTGTACTCTGATGCTTTTTCTATAGTAAAAATGCACATTGCACACGAGCCGATGTCC 900
consensus_686#1 ------------------------------------------------------------
consensus_686#0 GATTTTAAAAGAAAACAAAAATTTCAGGTTCATCACAATCACATGTTAGCTAATGTAATA 960
consensus_686#1 ------------------------------------------------------------
consensus_686#0 CTAAAAATTTTCATGTCAAAGTTATCTCTAACGTGTTTTACCTAACAACCTTGTGATGCT 1020
consensus_686#1 ------------------------------------------------------------
consensus_686#0 TCTCCTGCAGAATGAGACTCTTGATGTCATTATCAAAAGTTTAGTAGTCAACTTCTTTCT 1080
consensus_686#1 ------------------------------------------------------------
consensus_686#0 TCAGTTTGTTTTGTCTGGGTAGATAAGTGACCTTGTTTGGTACCATGCCATTGTCAGTAC 1140
consensus_686#1 ------------------------------------------------------------
consensus_686#0 AGCAGTATGATACCTAAAACAAAGAACCTGTATGTTATAATTAAGTGTATTGTCTTGTTT 1200
consensus_686#1 ------------------------------------------------------------
consensus_686#0 GGTTGGTTGAGACAATACTATTTAGCGGGTTATACTCAGAATTTTTTTGCAGTAAACTGA 1260
consensus_686#1 ------------------------------------------------------------
consensus_686#0 CGCTTTAATCTATCAGTTTGCTCTGCCTTGCTCATATTGCATTTGCGTGTGGCTGTTCAG 1320
consensus_686#1 ------------------------------------------------------------
consensus_686#0 GGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAG 1380
consensus_686#1 -GTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAG 633
***********************************************************
consensus_686#0 AAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCA 1440
consensus_686#1 AAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCA 693
************************************************************
consensus_686#0 GCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAG 1500
consensus_686#1 GCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAG 753
************************************************************
consensus_686#0 ATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAAC 1560
consensus_686#1 ATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAAC 813
************************************************************
consensus_686#0 GCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGA 1620
consensus_686#1 GCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGA 873
************************************************************
consensus_686#0 AAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATG 1680
consensus_686#1 AAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATG 933
************************************************************
consensus_686#0 TAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAA 1740
consensus_686#1 TAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAA 993
************************************************************
consensus_686#0 CA 1742
consensus_686#1 CA 995
**
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||