These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1742 fasta sequence [CGCCGCGACGTCCAGGTCACACAGGTTCTTTGGAACGGGAAAGGGAGCAAAAGGCCGAATCTTTTCCGCTGTTGCTGCTCCTCCTTTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTAAGTAATATCATGCATTGATGTTTATTCGGTGCTACAGAGAAAACAATATCATACATGTTTCCTTCTCAGGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTCATCTGCTGAGGTAACCATTTGCTCGGTTAAAGTTTTTTTAGTCACTAAGATGAGTGATGCATAGTCTTGTTGGTTGCATTGTCATAATGGCATCCGGGTTTTACATTTTTTAAAAAATATTGAGTGTACTCTGATGCTTTTTCTATAGTAAAAATGCACATTGCACACGAGCCGATGTCCGATTTTAAAAGAAAACAAAAATTTCAGGTTCATCACAATCACATGTTAGCTAATGTAATACTAAAAATTTTCATGTCAAAGTTATCTCTAACGTGTTTTACCTAACAACCTTGTGATGCTTCTCCTGCAGAATGAGACTCTTGATGTCATTATCAAAAGTTTAGTAGTCAACTTCTTTCTTCAGTTTGTTTTGTCTGGGTAGATAAGTGACCTTGTTTGGTACCATGCCATTGTCAGTACAGCAGTATGATACCTAAAACAAAGAACCTGTATGTTATAATTAAGTGTATTGTCTTGTTTGGTTGGTTGAGACAATACTATTTAGCGGGTTATACTCAGAATTTTTTTGCAGTAAACTGACGCTTTAATCTATCAGTTTGCTCTGCCTTGCTCATATTGCATTTGCGTGTGGCTGTTCAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA] [+] EMBL AK066540 [CGCCGCGACGTCCAGGTCACACAGGTTCTTTGGAACGGGAAAGGGAGCAAAAGGCCGAATCTTTTCCGCTGTTGCTGCTCCTCCTTTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTAAGTAATATCATGCATTGATGTTTATTCGGTGCTACAGAGAAAACAATATCATACATGTTTCCTTCTCAGGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTCATCTGCTGAGGTAACCATTTGCTCGGTTAAAGTTTTTTTAGTCACTAAGATGAGTGATGCATAGTCTTGTTGGTTGCATTGTCATAATGGCATCCGGGTTTTACATTTTTTAAAAAATATTGAGTGTACTCTGATGCTTTTTCTATAGTAAAAATGCACATTGCACACGAGCCGATGTCCGATTTTAAAAGAAAACAAAAATTTCAGGTTCATCACAATCACATGTTAGCTAATGTAATACTAAAAATTTTCATGTCAAAGTTATCTCTAACGTGTTTTACCTAACAACCTTGTGATGCTTCTCCTGCAGAATGAGACTCTTGATGTCATTATCAAAAGTTTAGTAGTCAACTTCTTTCTTCAGTTTGTTTTGTCTGGGTAGATAAGTGACCTTGTTTGGTACCATGCCATTGTCAGTACAGCAGTATGATACCTAAAACAAAGAACCTGTATGTTATAATTAAGTGTATTGTCTTGTTTGGTTGGTTGAGACAATACTATTTAGCGGGTTATACTCAGAATTTTTTTGCAGTAAACTGACGCTTTAATCTATCAGTTTGCTCTGCCTTGCTCATATTGCATTTGCGTGTGGCTGTTCAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA] consensusID : consensus_686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 995 fasta sequence [TTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGCGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTATCCACACTCACCGATGGGTCAGCAGACAAAGTTTCATCTGCTGAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA] [+] EMBL AK060752 [TTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGCGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTATCCACACTCACCGATGGGTCAGCAGACAAAGTTTCATCTGCTGAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_686#0 CGCCGCGACGTCCAGGTCACACAGGTTCTTTGGAACGGGAAAGGGAGCAAAAGGCCGAAT 60 consensus_686#1 ------------------------------------------------------------ consensus_686#0 CTTTTCCGCTGTTGCTGCTCCTCCTTTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAG 120 consensus_686#1 -------------------------TTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAG 35 *********************************** consensus_686#0 TAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAA 180 consensus_686#1 TAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAA 95 ************************************************************ consensus_686#0 GAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAA 240 consensus_686#1 GAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAA 155 ************************************************************ consensus_686#0 AACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAG 300 consensus_686#1 AACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAG 215 ************************************************************ consensus_686#0 CTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTG 360 consensus_686#1 CTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTG 275 ************************************************************ consensus_686#0 CAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTT 420 consensus_686#1 CAAGGACAAGTTCCTCGCGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTT 335 ***************** ****************************************** consensus_686#0 TGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGT 480 consensus_686#1 TGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGT 395 ************************************************************ consensus_686#0 GGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGA 540 consensus_686#1 GGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGA 455 ************************************************************ consensus_686#0 GGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGA 600 consensus_686#1 GGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGA 515 ************************************************************ consensus_686#0 TGCTGTAACTGTAAGTAATATCATGCATTGATGTTTATTCGGTGCTACAGAGAAAACAAT 660 consensus_686#1 TGCTGTAACTGTA----------------------------------------------- 528 ************* consensus_686#0 ATCATACATGTTTCCTTCTCAGGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTC 720 consensus_686#1 -------------------------TCCACACTCACCGATGGGTCAGCAGACAAAGTTTC 563 *************** ******************* consensus_686#0 ATCTGCTGAGGTAACCATTTGCTCGGTTAAAGTTTTTTTAGTCACTAAGATGAGTGATGC 780 consensus_686#1 ATCTGCTGAGG------------------------------------------------- 574 *********** consensus_686#0 ATAGTCTTGTTGGTTGCATTGTCATAATGGCATCCGGGTTTTACATTTTTTAAAAAATAT 840 consensus_686#1 ------------------------------------------------------------ consensus_686#0 TGAGTGTACTCTGATGCTTTTTCTATAGTAAAAATGCACATTGCACACGAGCCGATGTCC 900 consensus_686#1 ------------------------------------------------------------ consensus_686#0 GATTTTAAAAGAAAACAAAAATTTCAGGTTCATCACAATCACATGTTAGCTAATGTAATA 960 consensus_686#1 ------------------------------------------------------------ consensus_686#0 CTAAAAATTTTCATGTCAAAGTTATCTCTAACGTGTTTTACCTAACAACCTTGTGATGCT 1020 consensus_686#1 ------------------------------------------------------------ consensus_686#0 TCTCCTGCAGAATGAGACTCTTGATGTCATTATCAAAAGTTTAGTAGTCAACTTCTTTCT 1080 consensus_686#1 ------------------------------------------------------------ consensus_686#0 TCAGTTTGTTTTGTCTGGGTAGATAAGTGACCTTGTTTGGTACCATGCCATTGTCAGTAC 1140 consensus_686#1 ------------------------------------------------------------ consensus_686#0 AGCAGTATGATACCTAAAACAAAGAACCTGTATGTTATAATTAAGTGTATTGTCTTGTTT 1200 consensus_686#1 ------------------------------------------------------------ consensus_686#0 GGTTGGTTGAGACAATACTATTTAGCGGGTTATACTCAGAATTTTTTTGCAGTAAACTGA 1260 consensus_686#1 ------------------------------------------------------------ consensus_686#0 CGCTTTAATCTATCAGTTTGCTCTGCCTTGCTCATATTGCATTTGCGTGTGGCTGTTCAG 1320 consensus_686#1 ------------------------------------------------------------ consensus_686#0 GGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAG 1380 consensus_686#1 -GTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAG 633 *********************************************************** consensus_686#0 AAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCA 1440 consensus_686#1 AAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCA 693 ************************************************************ consensus_686#0 GCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAG 1500 consensus_686#1 GCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAG 753 ************************************************************ consensus_686#0 ATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAAC 1560 consensus_686#1 ATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAAC 813 ************************************************************ consensus_686#0 GCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGA 1620 consensus_686#1 GCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGA 873 ************************************************************ consensus_686#0 AAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATG 1680 consensus_686#1 AAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATG 933 ************************************************************ consensus_686#0 TAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAA 1740 consensus_686#1 TAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAA 993 ************************************************************ consensus_686#0 CA 1742 consensus_686#1 CA 995 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||