These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence [CTTGTCCGCATTGCCCTCGAAACGGAGCATGAGGATTGGTTCCGTCAACGCGAACCAAGAAATTCTACTACCGCNGNAATGGAANTTGTTTGGGANCGAAAAGGAGGGAGTTNCCGTNTACGTCGACGTGNCTCNCAATGGTACTTGCTGGGTGATCAAACTTTGCCGACCAGATCTACCGCTGGAAATGGACATGNCTGGGACCACATGCTTGGACCCGCNCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGNATCGATGGCGCTGCCACCCAGATCTCCCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGATCTACTACCG-CAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGNCG-CCGCCGT-CCAGGTCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCCGCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCAACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATTAATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGAGAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAAA] [+] EMBL AU031676 [CTTGTCCGCATTGCCCTCGAAACGGAGCATGAGGATTGGTTCCGTCAACGCGAACCAAGAAATTCTACTACCGCNGNAATGGAANTTGTTTGGGANCGAAAAGGAGGGAGTTNCCGTNTACGTCGACGTGNCTCNCAATGGTACTTGCTGGGTGATCAAACTTTGCCGACCAGATCTACCGCTGGAAATGGACATGNCTGGGACCACATGCTTGGACCCGCNCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGNATCGATGGCGCTGCCACCCAGATCTCCCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGATCTACTACCG CAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGNCG CCGCCGT CCAGGTCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCCGCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCAACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATTAATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGAGAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAAA] [+] EMBL AU031662 [ TGGGCCCGCATCGATGGCGCTGCCACCCAGATCT CCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGATCTACTACCGCCAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGGCGCCCGCCGTCCCAGGTCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCCGCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCAACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATTAATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGAGAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAAA] consensusID : consensus_6863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 346 fasta sequence [GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCCTCGAACGAGCATGAGGATTGGTGCGTCAACGCGAACCAAGAAATCTACTACCGCCGCAATGGAGGTAAGTTGGGAACGCAAGGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCTGGGTGATCAACTCTGCCGACCAGATCTACCGCTGGAATGGACATGGCTGGGACCACATGCCTGGAGCCGCGCGCACNGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGCATCGATGG] [+] EMBL OSR03711A [GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCCTCGAACGAGCATGAGGATTGGTGCGTCAACGCGAACCAAGAAATCTACTACCGCCGCAATGGAGGTAAGTTGGGAACGCAAGGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCTGGGTGATCAACTCTGCCGACCAGATCTACCGCTGGAATGGACATGGCTGGGACCACATGCCTGGAGCCGCGCGCACNGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGCATCGATGG] [+] EMBL OSR04701A [GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCCTCGAACGAGCATGAGGATTGGTGCGTCAACGCGAACCAAGAAATCTACTACCGCCGCAATGGAGGT GGTTGGGAACGCAAGGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCTGGGTGATCAACTCTGCCGACCAGATCTACCGCTGGAATGGACATGGCTGGGACCACATGCCTGGAGCCGCGCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6863#0 -------------------------------CTTGTCCGCATTGCCCTCGAAACGGAGCA 29 consensus_6863#1 GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCC-TCGAA--CGAGCA 57 ************* ***** ***** consensus_6863#0 TGAGGATTGGTTCCGTCAACGCGAACCAAGAAATTCTACTACCGCNGNAATGGAANTTGT 89 consensus_6863#1 TGAGGATTGGTGC-GTCAACGCGAACCAAGAAAT-CTACTACCGCCGCAATGGAGGTAAG 115 *********** * ******************** ********** * ****** * consensus_6863#0 TTGGGANCGAAAAGGAGGGAGTTNCCGTNTACGTCGACGTGNCTCNCAATGGTACTTGCT 149 consensus_6863#1 TTGGGAACGCAA-GGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCT 174 ****** ** ** ******** * **** ************ *** * ******* **** consensus_6863#0 GGGTGATCAAACTTTGCCGACCAGATCTACCGCTGGAAATGGACATGNCTGGGACCACAT 209 consensus_6863#1 GGGTGATCAA-CTCTGCCGACCAGATCTACCGCTGGAA-TGGACATGGCTGGGACCACAT 232 ********** ** ************************ ******** ************ consensus_6863#0 GCTTGGACCCGCNCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGC 269 consensus_6863#1 GCCTGGAGCCGCGCGCACNGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGC 292 ** **** **** ***** ***************************************** consensus_6863#0 CAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGNATCGATGGCGCTGC 329 consensus_6863#1 CAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGCATCGATGG------ 346 ********************************************* ******** consensus_6863#0 CACCCAGATCTCCCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGA 389 consensus_6863#1 ------------------------------------------------------------ consensus_6863#0 TCTACTACCGCAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGNCGCCGCCGTCCAGG 449 consensus_6863#1 ------------------------------------------------------------ consensus_6863#0 TCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCC 509 consensus_6863#1 ------------------------------------------------------------ consensus_6863#0 GCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCA 569 consensus_6863#1 ------------------------------------------------------------ consensus_6863#0 ACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATT 629 consensus_6863#1 ------------------------------------------------------------ consensus_6863#0 AATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGA 689 consensus_6863#1 ------------------------------------------------------------ consensus_6863#0 GAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAA 749 consensus_6863#1 ------------------------------------------------------------ consensus_6863#0 A 750 consensus_6863#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||