Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6872 cluster # 6872       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6872#0 length = 1696 sequences # 3  
consensus_6872#1 length = 1610 sequences # 1  

consensusID : consensus_6872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1696
fasta sequence
                              [GAGCAAGACGAACAGACCAGACGAGAGATTGCCTTTTTAGCAGGAAAAGGTGAACGATCGATCGATCTCTCTCGCAGTCGTCTTTGTTAATTTAGCAGAGGACTTGGTAGCATAATTAGCTAGCTAACCGTTGCATTATATTGCATATAATTAGCTAGCTAGAGCTGGAATCAATGGCGCCAACCACGAACCAGAGCAGCGGGTCGGCGCCACTGACCGTGAACCCGGTGGTGCAGCGCGCCGTCGTCGGCGCGCAGCTGCCGACGACGTCGCCGTGCCGCACGCCCAAGTCGCCGCCGCCGTCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTCCGCGGCATCATCCCGGGCACCATCCTCGCCAGCCTCGAGGAGAAGCTGCAGAAGCTAGACGGCGCCGACGCGAGGATCGCCGACTACTTCGACGTAATCGCCGGGACGAGCACCGGCGGGCTGGTGACCGCCATGCTCACCGCGCCCAACGACCAGGGCCGCCCGCTCTTCGCCGCCAAGGACATCAACGACTTCTACCTCAAGCACTGCCCCAAGATCTTCCCTCCCAGAAGCATTCCAATTGTGGGATTGTTCCAGAGCATGGCGG-GGCCAAAGTACGACGGCAAGTACCTGCACTCGGTGGTGCAGTCGCTGCTCGGCGATAAGCGAGTTAATGAGACGATCACCAACGTCGTCATCCCCACCTTCGACATCAAGCTCCTCCAGCCCATCACCTTCTCCCGATTCGACGCCCAGATCGATGTGTCCAAGAACGCTCTCCTGTCGGACGTGTGCATCAGCACCTCGGCGGCGCCGACGTACCTCCCCGGCCACCGCTTCCAGACCAAGGACAAGGACGGCAAGCCCCGGGAATTCAACCTCGTCGACGGCGGCGTCGCCGCG-AACAACCCGACGCTGTTGGCGATGACACACGTAAGCAAGCAGATCCTGCTGGGTAAACAGGACGAC-TTCTTCCCGATCAAGCCGGCGGACTAC-GGCAAGTTCATGATCCTGTCGCT-GGGCA-CCGGCACGGCCAAGATCGA-GGAGAAGTACGACGCCG-TTCAG-TCCGGCAAGT-GGGGGATGATCAACT-GGGTCTACCACGACGGCTCGTCGCCGCTGATCGACAGCTTCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCCTCCGTGCTCTTCCAGGCGCTGCACTGCGAGAAGAGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACACGGCGT-CCGTCGACGTCTCCACGCCGGAGAACCTGAACCGGCTCGTCGACGTTGGCAAGGCGCTGCTCAAGAAGCGGGCGTGCAAGGTGAACCTCGAGACCGGCAAGAACGAGCCCGACATGAGCAGGGGCACCAACGAGGAGGAGCTGGAGAA-TTTCGCCAAGATGCTGTCGGAGGAACGCAAGGCCAGGCTCCAGAAGAAGGCCTTCCTTCAGTAAACATGGATGCACGGACATGCATGCATATATGCATGTATCGAATACTATTTGTGTAGCAAATTCCCTCCCTGAACCAACAGCATAATCATTAGTCGTAACCCATGCATGCATTCGAACAGGCTATATTTCTATTACATTTGTACTTTAATTTTGTTGGAAAAGTTATACTATGTAAACTTTGTTTGTCGTATATCTGGAATAAAGTACTACATAATTTAATTTAAAAA]

[+] EMBL AK108679             [GAGCAAGACGAACAGACCAGACGAGAGATTGCCTTTTTAGCAGGAAAAGGTGAACGATCGATCGATCTCTCTCGCAGTCGTCTTTGTTAATTTAGCAGAGGACTTGGTAGCATAATTAGCTAGCTAACCGTTGCATTATATTGCATATAATTAGCTAGCTAGAGCTGGAATCAATGGCGCCAACCACGAACCAGAGCAGCGGGTCGGCGCCACTGACCGTGAACCCGGTGGTGCAGCGCGCCGTCGTCGGCGCGCAGCTGCCGACGACGTCGCCGTGCCGCACGCCCAAGTCGCCGCCGCCGTCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTCCGCGGCATCATCCCGGGCACCATCCTCGCCAGCCTCGAGGAGAAGCTGCAGAAGCTAGACGGCGCCGACGCGAGGATCGCCGACTACTTCGACGTAATCGCCGGGACGAGCACCGGCGGGCTGGTGACCGCCATGCTCACCGCGCCCAACGACCAGGGCCGCCCGCTCTTCGCCGCCAAGGACATCAACGACTTCTACCTCAAGCACTGCCCCAAGATCTTCCCTCCCAGAAGCATTCCAATTGTGGGATTGTTCCAGAGCATGGCGG GGCCAAAGTACGACGGCAAGTACCTGCACTCGGTGGTGCAGTCGCTGCTCGGCGATAAGCGAGTTAATGAGACGATCACCAACGTCGTCATCCCCACCTTCGACATCAAGCTCCTCCAGCCCATCACCTTCTCCCGATTCGACGCCCAGATCGATGTGTCCAAGAACGCTCTCCTGTCGGACGTGTGCATCAGCACCTCGGCGGCGCCGACGTACCTCCCCGGCCACCGCTTCCAGACCAAGGACAAGGACGGCAAGCCCCGGGAATTCAACCTCGTCGACGGCGGCGTCGCCGCG AACAACCCGACGCTGTTGGCGATGACACACGTAAGCAAGCAGATCCTGCTGGGTAAACAGGACGAC TTCTTCCCGATCAAGCCGGCGGACTAC GGCAAGTTCATGATCCTGTCGCT GGGCA CCGGCACGGCCAAGATCGA GGAGAAGTACGACGCCG TTCAG TCCGGCAAGT GGGGGATGATCAACT GGGTCTACCACGACGGCTCGTCGCCGCTGATCGACAGCTTCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCCTCCGTGCTCTTCCAGGCGCTGCACTGCGAGAAGAGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACACGGCGT CCGTCGACGTCTCCACGCCGGAGAACCTGAACCGGCTCGTCGACGTTGGCAAGGCGCTGCTCAAGAAGCGGGCGTGCAAGGTGAACCTCGAGACCGGCAAGAACGAGCCCGACATGAGCAGGGGCACCAACGAGGAGGAGCTGGAGAA TTTCGCCAAGATGCTGTCGGAGGAACGCAAGGCCAGGCTCCAGAAGAAGGCCTTCCTTCAGTAAACATGGATGCACGGACATGCATGCATATATGCATGTATCGAATACTATTTGTGTAGCAAATTCCCTCCCTGAACCAACAGCATAATCATTAGTCGTAACCCATGCATGCATTCGAACAGGCTATATTTCTATTACATTTGTACTTTAATTTTGTTGGAAAAGTTATACTATGTAAACTTTGTTTGTCGTATATCTGGAATAAAGTACTACATA              ]
[+] EMBL AU031883             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGCGGAGGCCAAAGTACGACGGCAAGTACCTGCACTCGGTGGTGCAGTCGCTGCTCGGCGATAAGCGAGTTAATGAGACGATCACCAACGTCGTCATCCCCACCTTCGACATCAAGCTCCTCCAGCCCATCACCTTCTCCCGATTCGACGCCCAGATCGATGTGTCCAAGAACGCTCTCCTGTCGGACGTGTGCATCAGCACCTCGGCGGCGCCGACGTACCTCCCCGGCCACCGCTTCCAGACCAAGGACAAGGACGGCAAGCCCCGGGAATTCAACCTCGTCGACGGCGGCGTCG CGCGAAACAACCCGACGCTGTTGGCGATGACACACGTAAGCAAGCAGATCCTGCTGGGTAAACAGGACGACTTTCTTCCCGATCAAGCNGGCGGACTACGGGCAAGTTCATGATCCTGTCGCTGGGGCANCGGGCACGGCCAAGATCGAGGGAGAAGTACGACGCCGTTTCAGTTCCGGCAAGTGGGGGGATGATCAACTGGGGTCTtac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU031884             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CACGGCGTCCCGTCGACGTCTCCACGCCGGAGAACCTGAACCGGCTCGTCGACNTTGGCAAGGCGCTGCTCAAGAAGCGGGCGTGCAAGGTGAACCTCGAGACCGGCAAGAACGAGCCCGACATGAGCAGGGGCACCAACGAGGAGGAGCTGGAGAATTTTCGCCAAGATGCTGTCGGAGGAACGCAAGGCCAGGCTCCAGAAGAAGGCCTTCCTTCAGTAAACATGGATGCACGGACATGCATGCATATATGCATGTATCGAATACTATTTGTGTAGCAAATTCCCTCCCTGAACCAACAGCATAATCATTAGTCGTAACCCATGCATGCATTCGAACAGGCTATATTTCTATTACATTTGTACTTTAATTTTGTTGGAAAAGTTATACTATGTAAACTTTGTTTGTCGTATATCTGGAATAAAGTACTACATAATTTAATTTAAAAA]


>consensus_6872#0 GAGCAAGACGAACAGACCAGACGAGAGATTGCCTTTTTAGCAGGAAAAGGTGAACGATCG ATCGATCTCTCTCGCAGTCGTCTTTGTTAATTTAGCAGAGGACTTGGTAGCATAATTAGC TAGCTAACCGTTGCATTATATTGCATATAATTAGCTAGCTAGAGCTGGAATCAATGGCGC CAACCACGAACCAGAGCAGCGGGTCGGCGCCACTGACCGTGAACCCGGTGGTGCAGCGCG CCGTCGTCGGCGCGCAGCTGCCGACGACGTCGCCGTGCCGCACGCCCAAGTCGCCGCCGC CGTCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTCCGCGGCATCA TCCCGGGCACCATCCTCGCCAGCCTCGAGGAGAAGCTGCAGAAGCTAGACGGCGCCGACG CGAGGATCGCCGACTACTTCGACGTAATCGCCGGGACGAGCACCGGCGGGCTGGTGACCG CCATGCTCACCGCGCCCAACGACCAGGGCCGCCCGCTCTTCGCCGCCAAGGACATCAACG ACTTCTACCTCAAGCACTGCCCCAAGATCTTCCCTCCCAGAAGCATTCCAATTGTGGGAT TGTTCCAGAGCATGGCGGGGCCAAAGTACGACGGCAAGTACCTGCACTCGGTGGTGCAGT CGCTGCTCGGCGATAAGCGAGTTAATGAGACGATCACCAACGTCGTCATCCCCACCTTCG ACATCAAGCTCCTCCAGCCCATCACCTTCTCCCGATTCGACGCCCAGATCGATGTGTCCA AGAACGCTCTCCTGTCGGACGTGTGCATCAGCACCTCGGCGGCGCCGACGTACCTCCCCG GCCACCGCTTCCAGACCAAGGACAAGGACGGCAAGCCCCGGGAATTCAACCTCGTCGACG GCGGCGTCGCCGCGAACAACCCGACGCTGTTGGCGATGACACACGTAAGCAAGCAGATCC TGCTGGGTAAACAGGACGACTTCTTCCCGATCAAGCCGGCGGACTACGGCAAGTTCATGA TCCTGTCGCTGGGCACCGGCACGGCCAAGATCGAGGAGAAGTACGACGCCGTTCAGTCCG GCAAGTGGGGGATGATCAACTGGGTCTACCACGACGGCTCGTCGCCGCTGATCGACAGCT TCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCCTCCGTGCTCTTCCAGGCGCTGC ACTGCGAGAAGAGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACACGGCGTCCG TCGACGTCTCCACGCCGGAGAACCTGAACCGGCTCGTCGACGTTGGCAAGGCGCTGCTCA AGAAGCGGGCGTGCAAGGTGAACCTCGAGACCGGCAAGAACGAGCCCGACATGAGCAGGG GCACCAACGAGGAGGAGCTGGAGAATTTCGCCAAGATGCTGTCGGAGGAACGCAAGGCCA GGCTCCAGAAGAAGGCCTTCCTTCAGTAAACATGGATGCACGGACATGCATGCATATATG CATGTATCGAATACTATTTGTGTAGCAAATTCCCTCCCTGAACCAACAGCATAATCATTA GTCGTAACCCATGCATGCATTCGAACAGGCTATATTTCTATTACATTTGTACTTTAATTT TGTTGGAAAAGTTATACTATGTAAACTTTGTTTGTCGTATATCTGGAATAAAGTACTACA TAATTTAATTTAAAAA



consensusID : consensus_6872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1610
fasta sequence
                              [ATCAACGATAGAGCCAAGCACAAACACGAGCTAGACGACGCTATCAGCGAAGCAGAAACACACACACACACACACAAAATCTCCCGGTGTTTTGTTTAGCACAGTCTAGTGTTTCCCATGGCGCCCGTGCAGACACCGGAGCAGAGCAACGGGTCACTGACGTTGAACCCGGTGGTGCAGCGCGTGCTGAGCCGCGGCAAGTCGCTGCTGTCGCCGTCCACGCCGCGGTCGCCGCCGCCGTCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTGCGCGGCATCATCCCGGGCACCATCCTCGCGTTCCTGGAGGAGAAACTGCAGGAGCTGGACGGCCCCGAGGCTCGGCTCGCCAACTACTTCGACGTGATCGCCGGGACGAGCACCGGCGGGCTGGTGACCGCCATGCTCACCGCGCCTAACGACAACGGCGACCCGCTGTTCGCCGCCAGGGACATCAACGACTTCTACCTCGAGCACTGCCCCAGGATCTTCCCTCCCGTCAGCAAGGGGCCTCTCGGTCTGTTCAAGAGCATGACGGGGCCCAAGTACGACGGCCGGCACCTCCACTCCGTCGTGCAGCAGCTGCTCGGCGACAAGCGCGTCGACAGCACCATCACCAACATCGTCGTCCCGACCTTCGACATCAAGCTCCTCCAGCCAACAATCTTCTCGACCTACAACGCTCGCAAGGACGTGTCCAAGAACGCGCTTCTGTCGGACGTGTGCATCAGCACGTCGGCGGCGCCGACGTACCTCCCCGGCCACCGCTTCGAGACGACGGACAAGGACGGCAAGCCCCGGGAATTTAACCTCGTCGACGGCGGCTTCGCCGCGAACAATCCGACGCTGCTGGCGATGACACACGTAACCAAGCAGATCCTGCTGGGCTGCCAGGACTTCTTCCCGATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTGTCGCTGGGCACCGGCTCGGCCAAGATCGAGAAGAAGTTCGACGCCGTCGAGAGCGGCCGGTGGGGCGTCCTCGGCTGGCTGTTCAACAAGGGCGCGACGCCGCTGATCGACAGCTTCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCATCCGTGCTCTTCCAGGCGCTGCACTGCGAGAAGCGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACGCGGCGTCCGTCGACGTCTCCACGCCGGAGAACCTCCAGAGGCTCGTCGGCGTCGGCAAGGCGCTGCTCAAGAAGCAGGCGTGCAAGGTCGACCTCGAGACCGGCAAGAACGAGCCGGACATGAACCGGAAAAGTAACGAGGAGGAGCTGGTGCTTTTCGCCGAGATGCTGTCGCGAGAACGGAAGGCCAGGCTTCAGAAAAAGCAGGGGAGCATGAAGATCTAGTACATATTGGCAAATTGTAGCAGATCTTCGGATCAATACTACAGGTCTACAACTACTATTGGTGTCAAGTGATTGGATGTAAAATTTATCCGTTCATATTGGATGTTTGTTGTATCTTCGTAAATTCATGTACATCTATGTAAGGAAATGATTCTAAACTCTCGAGAAGATATCTATGTGAGTAGTAATGAAAAAAAGCT]

[+] EMBL AK101432             [ATCAACGATAGAGCCAAGCACAAACACGAGCTAGACGACGCTATCAGCGAAGCAGAAACACACACACACACACACAAAATCTCCCGGTGTTTTGTTTAGCACAGTCTAGTGTTTCCCATGGCGCCCGTGCAGACACCGGAGCAGAGCAACGGGTCACTGACGTTGAACCCGGTGGTGCAGCGCGTGCTGAGCCGCGGCAAGTCGCTGCTGTCGCCGTCCACGCCGCGGTCGCCGCCGCCGTCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTGCGCGGCATCATCCCGGGCACCATCCTCGCGTTCCTGGAGGAGAAACTGCAGGAGCTGGACGGCCCCGAGGCTCGGCTCGCCAACTACTTCGACGTGATCGCCGGGACGAGCACCGGCGGGCTGGTGACCGCCATGCTCACCGCGCCTAACGACAACGGCGACCCGCTGTTCGCCGCCAGGGACATCAACGACTTCTACCTCGAGCACTGCCCCAGGATCTTCCCTCCCGTCAGCAAGGGGCCTCTCGGTCTGTTCAAGAGCATGACGGGGCCCAAGTACGACGGCCGGCACCTCCACTCCGTCGTGCAGCAGCTGCTCGGCGACAAGCGCGTCGACAGCACCATCACCAACATCGTCGTCCCGACCTTCGACATCAAGCTCCTCCAGCCAACAATCTTCTCGACCTACAACGCTCGCAAGGACGTGTCCAAGAACGCGCTTCTGTCGGACGTGTGCATCAGCACGTCGGCGGCGCCGACGTACCTCCCCGGCCACCGCTTCGAGACGACGGACAAGGACGGCAAGCCCCGGGAATTTAACCTCGTCGACGGCGGCTTCGCCGCGAACAATCCGACGCTGCTGGCGATGACACACGTAACCAAGCAGATCCTGCTGGGCTGCCAGGACTTCTTCCCGATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTGTCGCTGGGCACCGGCTCGGCCAAGATCGAGAAGAAGTTCGACGCCGTCGAGAGCGGCCGGTGGGGCGTCCTCGGCTGGCTGTTCAACAAGGGCGCGACGCCGCTGATCGACAGCTTCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCATCCGTGCTCTTCCAGGCGCTGCACTGCGAGAAGCGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACGCGGCGTCCGTCGACGTCTCCACGCCGGAGAACCTCCAGAGGCTCGTCGGCGTCGGCAAGGCGCTGCTCAAGAAGCAGGCGTGCAAGGTCGACCTCGAGACCGGCAAGAACGAGCCGGACATGAACCGGAAAAGTAACGAGGAGGAGCTGGTGCTTTTCGCCGAGATGCTGTCGCGAGAACGGAAGGCCAGGCTTCAGAAAAAGCAGGGGAGCATGAAGATCTAGTACATATTGGCAAATTGTAGCAGATCTTCGGATCAATACTACAGGTCTACAACTACTATTGGTGTCAAGTGATTGGATGTAAAATTTATCCGTTCATATTGGATGTTTGTTGTATCTTCGTAAATTCATGTACATCTATGTAAGGAAATGATTCTAAACTCTCGAGAAGATATCTATGTGAGTAGTAATGAAAAAAAGCT]


>consensus_6872#1 ATCAACGATAGAGCCAAGCACAAACACGAGCTAGACGACGCTATCAGCGAAGCAGAAACA CACACACACACACACAAAATCTCCCGGTGTTTTGTTTAGCACAGTCTAGTGTTTCCCATG GCGCCCGTGCAGACACCGGAGCAGAGCAACGGGTCACTGACGTTGAACCCGGTGGTGCAG CGCGTGCTGAGCCGCGGCAAGTCGCTGCTGTCGCCGTCCACGCCGCGGTCGCCGCCGCCG TCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTGCGCGGCATCATC CCGGGCACCATCCTCGCGTTCCTGGAGGAGAAACTGCAGGAGCTGGACGGCCCCGAGGCT CGGCTCGCCAACTACTTCGACGTGATCGCCGGGACGAGCACCGGCGGGCTGGTGACCGCC ATGCTCACCGCGCCTAACGACAACGGCGACCCGCTGTTCGCCGCCAGGGACATCAACGAC TTCTACCTCGAGCACTGCCCCAGGATCTTCCCTCCCGTCAGCAAGGGGCCTCTCGGTCTG TTCAAGAGCATGACGGGGCCCAAGTACGACGGCCGGCACCTCCACTCCGTCGTGCAGCAG CTGCTCGGCGACAAGCGCGTCGACAGCACCATCACCAACATCGTCGTCCCGACCTTCGAC ATCAAGCTCCTCCAGCCAACAATCTTCTCGACCTACAACGCTCGCAAGGACGTGTCCAAG AACGCGCTTCTGTCGGACGTGTGCATCAGCACGTCGGCGGCGCCGACGTACCTCCCCGGC CACCGCTTCGAGACGACGGACAAGGACGGCAAGCCCCGGGAATTTAACCTCGTCGACGGC GGCTTCGCCGCGAACAATCCGACGCTGCTGGCGATGACACACGTAACCAAGCAGATCCTG CTGGGCTGCCAGGACTTCTTCCCGATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTG TCGCTGGGCACCGGCTCGGCCAAGATCGAGAAGAAGTTCGACGCCGTCGAGAGCGGCCGG TGGGGCGTCCTCGGCTGGCTGTTCAACAAGGGCGCGACGCCGCTGATCGACAGCTTCAGC CAGGCCAGCGCCGACCTCGTCGACATCCACGCATCCGTGCTCTTCCAGGCGCTGCACTGC GAGAAGCGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACGCGGCGTCCGTCGAC GTCTCCACGCCGGAGAACCTCCAGAGGCTCGTCGGCGTCGGCAAGGCGCTGCTCAAGAAG CAGGCGTGCAAGGTCGACCTCGAGACCGGCAAGAACGAGCCGGACATGAACCGGAAAAGT AACGAGGAGGAGCTGGTGCTTTTCGCCGAGATGCTGTCGCGAGAACGGAAGGCCAGGCTT CAGAAAAAGCAGGGGAGCATGAAGATCTAGTACATATTGGCAAATTGTAGCAGATCTTCG GATCAATACTACAGGTCTACAACTACTATTGGTGTCAAGTGATTGGATGTAAAATTTATC CGTTCATATTGGATGTTTGTTGTATCTTCGTAAATTCATGTACATCTATGTAAGGAAATG ATTCTAAACTCTCGAGAAGATATCTATGTGAGTAGTAATGAAAAAAAGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6872#0      GAGCAAGACGAACAGACCAGACGAGAGATTGCCTTTTTAGCAGGAAAAGGTGAACGATCG 60
consensus_6872#1      -----------------------------------ATCAAC-GATAGAGCCAAGCACAAA 24
                                                          * * * *  * **   * *     

consensus_6872#0      ATCGATCTCTCTCGCAGTCGTCTTTGTTAATTTAGCAGAGGACTTGGTAGCATAATTAGC 120
consensus_6872#1      CACGAGCT-------AGACGACGCTATCAGCGAAGCAGAA-ACACACACACACACACACA 76
                        *** **       ** ** *  * * *    ******  **       ** *   *  

consensus_6872#0      TAGCTAACCGTTGCATTATATTGCATATAATTAGCTAGCTAGAGCTGGAATCAATGGCGC 180
consensus_6872#1      AAATCTCCCGGTGTTTTGTTTAGCACA---------GTCTAGTGTTT---CCCATGGCGC 124
                       *     *** **  ** * * *** *           **** * *     * *******

consensus_6872#0      CAAC-CACGAACCAGAGCAGCGGGTCGGCGCCACTGACCGTGAACCCGGTGGTGCAGCGC 239
consensus_6872#1      CCGTGCAGACACCGGAGCAGAGCAACGG-GTCACTGACGTTGAACCCGGTGGTGCAGCGC 183
                      *    **   *** ****** *   *** * *******  ********************

consensus_6872#0      GCCGTCGTCGGCGCGCAGCTGCCGACGACGTCGCCGTGCCGCACGCCCAAGTCGCCGCCG 299
consensus_6872#1      GTGCTGAGCCGCGGCAAGTCGCTGCTGTCGCCGTC------CACGCCGCGGTCGCCGCCG 237
                      *   *   * ***   **  ** *  * ** ** *      ******   **********

consensus_6872#0      CCGTCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTCCGCGGCATC 359
consensus_6872#1      CCGTCGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTGCGCGGCATC 297
                      ************************************************** *********

consensus_6872#0      ATCCCGGGCACCATCCTCGCCAGCCTCGAGGAGAAGCTGCAGAAGCTAGACGGCGCCGAC 419
consensus_6872#1      ATCCCGGGCACCATCCTCGCGTTCCTGGAGGAGAAACTGCAGGAGCTGGACGGCCCCGAG 357
                      ********************   *** ******** ****** **** ****** **** 

consensus_6872#0      GCGAGGATCGCCGACTACTTCGACGTAATCGCCGGGACGAGCACCGGCGGGCTGGTGACC 479
consensus_6872#1      GCTCGGCTCGCCAACTACTTCGACGTGATCGCCGGGACGAGCACCGGCGGGCTGGTGACC 417
                      **  ** ***** ************* *********************************

consensus_6872#0      GCCATGCTCACCGCGCCCAACGACCAGGGCCGCCCGCTCTTCGCCGCCAAGGACATCAAC 539
consensus_6872#1      GCCATGCTCACCGCGCCTAACGACAACGGCGACCCGCTGTTCGCCGCCAGGGACATCAAC 477
                      ***************** ****** * ***  ****** ********** **********

consensus_6872#0      GACTTCTACCTCAAGCACTGCCCCAAGATCTTCCCTCCCAGAAGCATTCCAATTGTGGGA 599
consensus_6872#1      GACTTCTACCTCGAGCACTGCCCCAGGATCTTCCCTCCCGTCAGCAAGGGGCCTCTCGGT 537
                      ************ ************ *************   ****       * * ** 

consensus_6872#0      TTGTTCCAGAGCATGGCGGGGCCAAAGTACGACGGCAAGTACCTGCACTCGGTGGTGCAG 659
consensus_6872#1      CTGTTCAAGAGCATGACGGGGCCCAAGTACGACGGCCGGCACCTCCACTCCGTCGTGCAG 597
                       ***** ******** ******* ************  * **** ***** ** ******

consensus_6872#0      TCGCTGCTCGGCGATAAGCGAGTTAATGAGACGATCACCAACGTCGTCATCCCCACCTTC 719
consensus_6872#1      CAGCTGCTCGGCGACAAGCGCGTCGACAGCACCATCACCAACATCGTCGTCCCGACCTTC 657
                        ************ ***** **  *    ** ********* ***** **** ******

consensus_6872#0      GACATCAAGCTCCTCCAGCCCATCACCTTCTCCCGATTCGACGCCCAGATCGATGTGTCC 779
consensus_6872#1      GACATCAAGCTCCTCCAGCCAACAATCTTCTCGACCTACAACGCTCGCAAGGACGTGTCC 717
                      ******************** *  * ******    * * **** *  *  ** ******

consensus_6872#0      AAGAACGCTCTCCTGTCGGACGTGTGCATCAGCACCTCGGCGGCGCCGACGTACCTCCCC 839
consensus_6872#1      AAGAACGCGCTTCTGTCGGACGTGTGCATCAGCACGTCGGCGGCGCCGACGTACCTCCCC 777
                      ******** ** *********************** ************************

consensus_6872#0      GGCCACCGCTTCCAGACCAAGGACAAGGACGGCAAGCCCCGGGAATTCAACCTCGTCGAC 899
consensus_6872#1      GGCCACCGCTTCGAGACGACGGACAAGGACGGCAAGCCCCGGGAATTTAACCTCGTCGAC 837
                      ************ **** * *************************** ************

consensus_6872#0      GGCGGCGTCGCCGCGAACAACCCGACGCTGTTGGCGATGACACACGTAAGCAAGCAGATC 959
consensus_6872#1      GGCGGCTTCGCCGCGAACAATCCGACGCTGCTGGCGATGACACACGTAACCAAGCAGATC 897
                      ****** ************* ********* ****************** **********

consensus_6872#0      CTGCTGGGTAAACAGGACGACTTCTTCCCGATCAAGCCGGCGGACTACGGCAAGTTCATG 1019
consensus_6872#1      CTGCTGGGCTGCCAGGAC---TTCTTCCCGATCAAGCCGGCGGACTACGGCAAGTTCATG 954
                      ********    ******   ***************************************

consensus_6872#0      ATCCTGTCGCTGGGCACCGGCACGGCCAAGATCGAGGAGAAGTACGACGCCGTTCAGTCC 1079
consensus_6872#1      ATCCTGTCGCTGGGCACCGGCTCGGCCAAGATCGAGAAGAAGTTCGACGCCGTCGAGAGC 1014
                      ********************* ************** ****** *********  **  *

consensus_6872#0      GGCAAGTGGGGGATGATCAACTGGGTCTACCACGACGGCTCGTCGCCGCTGATCGACAGC 1139
consensus_6872#1      GGCCGGTGGGGCGTCCTCGGCTGGCTGTTCAACAAGGGCGCGACGCCGCTGATCGACAGC 1074
                      ***  ******  *  **  **** * * * ** * *** ** *****************

consensus_6872#0      TTCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCCTCCGTGCTCTTCCAGGCGCTG 1199
consensus_6872#1      TTCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCATCCGTGCTCTTCCAGGCGCTG 1134
                      ************************************** *********************

consensus_6872#0      CACTGCGAGAAGAGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACACGGCGTCC 1259
consensus_6872#1      CACTGCGAGAAGCGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACGCGGCGTCC 1194
                      ************ ************************************** ********

consensus_6872#0      GTCGACGTCTCCACGCCGGAGAACCTGAACCGGCTCGTCGACGTTGGCAAGGCGCTGCTC 1319
consensus_6872#1      GTCGACGTCTCCACGCCGGAGAACCTCCAGAGGCTCGTCGGCGTCGGCAAGGCGCTGCTC 1254
                      **************************  *  ********* *** ***************

consensus_6872#0      AAGAAGCGGGCGTGCAAGGTGAACCTCGAGACCGGCAAGAACGAGCCCGACATGAGCAGG 1379
consensus_6872#1      AAGAAGCAGGCGTGCAAGGTCGACCTCGAGACCGGCAAGAACGAGCCGGACATGAACCGG 1314
                      ******* ************  ************************* ******* * **

consensus_6872#0      GGCACCAACGAGGAGGAGCTGGAGAATTTCGCCAAGATGCTGTCGGAGGAACGCAAGGCC 1439
consensus_6872#1      AAAAGTAACGAGGAGGAGCTGGTGCTTTTCGCCGAGATGCTGTCGCGAGAACGGAAGGCC 1374
                         *  **************** *  ******* ***********   ***** ******

consensus_6872#0      AGGCTCCAGAAGAAGGCCTTCCTTCAGTAAACATGGATGCACGGACATGCATGCATATAT 1499
consensus_6872#1      AGGCTTCAGAAAAAG----------------CAGGGGAGCATGAAGATCTA-GTACATAT 1417
                      ***** ***** ***                ** **  *** * * **  * * * ****

consensus_6872#0      GCATGTATCGAATACTATTTGTGTAGCAAATTCCCTCCCTGAACCAACAG---CATAATC 1556
consensus_6872#1      -----TGGCAAAT--------TGTAGCAGATCTTCGGATCAATACTACAGGTCTACAACT 1464
                           *  * ***        ******* **   *      *  * ****    * **  

consensus_6872#0      ATTAGTCGTAACCCATGCATGCATTCGAACAGGCTATATTTCTATTACATTTGTACTTTA 1616
consensus_6872#1      ACTATTGGTGTCAAGTGATTGGATGTAAAATTTATCCGTTCATATTGGATGTTTGTTGTA 1524
                      * ** * **  *   **  ** **   **     *   **  ****  ** * *  * **

consensus_6872#0      ATTTTGTTGGAAAAGTTATA-CTATGTAAACTTTGTTTGTCGTATATCTGGAATAAAGTA 1675
consensus_6872#1      TCTTCGTAAATTCATGTACATCTATGTAAGGAA-ATGATTCTAAACTCTCGAGAAGATAT 1583
                        ** **      *  ** * ********      *   **  *  *** **  * *   

consensus_6872#0      CTACATAATT--TAATTTAAAAA---- 1696
consensus_6872#1      CTATGTGAGTAGTAATGAAAAAAAGCT 1610
                      ***  * * *  ****  *****    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)