These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 833 fasta sequence [AAAAAAATCCTAAAAGCTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGGTGAATAAAGCTACTATACCTTTCAATTTCCTCCTATATGGTCTCTTTGATGCGTAGGACTATTCTTGATTCTCTTACACTGAAAATAATGCTGTTTTTTCAAAAGAAACCTGTTGGTTTCTTGTTTTCAATGAAAACGAGGATTAATGGGCGGGCTCATGCCTTTTGGTACTTTTTTTTTCTTTTGGTTAAAAAAGGACAAACCCTTGGAAAAATGGCATACCTAGAAAAGGATTAGAATTTAGGACTTGTTGCAACTTGCAAGTGGCAATTGTTTTTTTTTTTCAGTTTTTTTAGTTTCATCGTGCTGAGAAGTGAGAAGAACTAGTTGATAATTCTGCGGGAACAGAGGAACCTGTAGGCTGTACACAGCGGTTTTGGTATTCGGCAAGTTGAACTCTTCCTGGGAATGCCAACCTATTTTCTCTTATTTATCCTTTAGATATATGTATCCTACCTTGTTCTCGCTGTACTTCTTTTATTTATAGTGTCAAA] [+] EMBL CB627498 [AAAAAAATCCTAAAAGCTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGGTGAATAAAGCTACTATACCTTTCAATTTCCTCCTATATGGTCTCTTTGATGCGTAGGACTATTCTTGATTCTCTTACACTGAAAATAATGCTGTTTTTTCAAAAGAAACCTGTTGGTTTCTTGTTTTCAATGAAAACGAGGATTAATGGGCGGGCTCATGCCTTTTGGTACTTTTTTTTTCTTTTGGTTAAAAAAGGACAAACCCTTGGAAAAATGGCATACCTAGAAAAGGATTAGAATTTAGGACTTGTTGCAACTTGCAAGTGGCAATTGTTTTTTTTTTTCAGTTTTTTTAGTTTCATCGTGCTGAGAAGTGAGAAGAACTAGTTGATAATTCTGCGGGAACAGAGGAACCTGTAGGCTGTACACAGCGGTTTTGGTATTCGGCAAGTTGAACTCTTCCTGGGAATGCCAACCTATTTTCTCTTATTTATCCTTTAGATATATGTATCCTACCTTGTTCTCGCTGTACTTCTTTTATTTATAGTGTCAAA] consensusID : consensus_6873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [CATGTGCATTCCTTCTCTGAACCGTGCCCCCCCAATTCGTCCGCGAGCTATACAAATTTGGATTCGTTTTGTTCGTTTCCAGCTCACCCTGTAAATCGTTTCTCAAGTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA] [+] EMBL CB651784 [CATGTGCATTCCTTCTCTGAACCGTGCCCCCCCAATTCGTCCGCGAGCTATACAAATTTGGATTCGTTTTGTTCGTTTCCAGCTCACCCTGTAAATCGTTTCTCAAGTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA] consensusID : consensus_6873#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [CCTAACCGTTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTGTTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA] [+] EMBL CB617769 [CCTAACCGTTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTGTTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA] consensusID : consensus_6873#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [TTAATCCCTTTCAATGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA] [+] EMBL CB649030 [TTAATCCCTTTCAATGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6873#1 CATGTGCATTCCTTCTCTGAACCGTGCCCCCCCAATTCGTCCGCGAGCTATACAAATTTG 60 consensus_6873#2 CCTAACCGTTTAATTTCTTT-CTTTGTTCTTATTACTGTCTCACGTG----AGACGCCTG 55 consensus_6873#3 ------------------------------------------------------------ consensus_6873#0 -----------------------------------------------------------A 1 consensus_6873#1 GATTCGTTTTGTTCGTTTCCAGCTCACCCTGTAAATCGTTTCTCAAGTCATTCAGGCATA 120 consensus_6873#2 AGCTCAACTGA---ATTTCTGGCCCCCTCT-----TCATCTCC----TCATTCAGGCATA 103 consensus_6873#3 -------------------------------TTAATCCCTTTCAATGTTCTTATTACTGT 29 consensus_6873#0 AAAAAATCCTAAAAGCTTA-ATTTCTTTCT-----TTGTTCTT---ATTACT--GTCTCA 50 * * * * consensus_6873#1 CTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCC 180 consensus_6873#2 CTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCC 163 consensus_6873#3 CTCACGTGAGACGCCTGAGCTCA---ACTGAATTTCTGGCCCCCTCTTCATCTCCACGCC 86 consensus_6873#0 CGTGAGACGCCTGAGCTCA-------ACTGAATTTCTGGCCCCCTCTTCATCTCCACGCC 103 * * * ** ** ** ** * ***** consensus_6873#1 ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 240 consensus_6873#2 ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 223 consensus_6873#3 ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 146 consensus_6873#0 ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 163 ************************************************************ consensus_6873#1 TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 300 consensus_6873#2 TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 283 consensus_6873#3 TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 206 consensus_6873#0 TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 223 ************************************************************ consensus_6873#1 CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 360 consensus_6873#2 CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 343 consensus_6873#3 CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 266 consensus_6873#0 CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 283 ************************************************************ consensus_6873#1 CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTG-TATG 419 consensus_6873#2 CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTG-TATG 402 consensus_6873#3 CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTG-TATG 325 consensus_6873#0 CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGGTGAA 343 ******************************************************* * consensus_6873#1 TGATGGGA------------GTTTTTTCCCATCTCTTCTCAATGAGATGTCAG-CCGTTA 466 consensus_6873#2 TGATGGGA------------GTTTTTTCCCATCTCTTCTCAATGAGATGTCAG-CCGTTG 449 consensus_6873#3 TGATGGGA------------GTTTTTTCCCATCTCTTCTCAATGAGATGTCAG-CCGTTA 372 consensus_6873#0 TAAAGCTACTATACCTTTCAATTTCCTCCTATATGGTCTCTTTGATGCGTAGGACTATTC 403 * * * * *** *** ** * **** *** ** * * ** consensus_6873#1 TTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA----------------- 509 consensus_6873#2 TTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA----------------- 492 consensus_6873#3 TTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA----------------- 415 consensus_6873#0 TTGATTCTCTTACACTGAAAATAATGCTGTTTTTTCAAAAGAAACCTGTTGGTTTCTTGT 463 *** * * * ** * * * ** * * * * consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#3 ------------------------------------------------------------ consensus_6873#0 TTTCAATGAAAACGAGGATTAATGGGCGGGCTCATGCCTTTTGGTACTTTTTTTTTCTTT 523 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#3 ------------------------------------------------------------ consensus_6873#0 TGGTTAAAAAAGGACAAACCCTTGGAAAAATGGCATACCTAGAAAAGGATTAGAATTTAG 583 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#3 ------------------------------------------------------------ consensus_6873#0 GACTTGTTGCAACTTGCAAGTGGCAATTGTTTTTTTTTTTCAGTTTTTTTAGTTTCATCG 643 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#3 ------------------------------------------------------------ consensus_6873#0 TGCTGAGAAGTGAGAAGAACTAGTTGATAATTCTGCGGGAACAGAGGAACCTGTAGGCTG 703 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#3 ------------------------------------------------------------ consensus_6873#0 TACACAGCGGTTTTGGTATTCGGCAAGTTGAACTCTTCCTGGGAATGCCAACCTATTTTC 763 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#3 ------------------------------------------------------------ consensus_6873#0 TCTTATTTATCCTTTAGATATATGTATCCTACCTTGTTCTCGCTGTACTTCTTTTATTTA 823 consensus_6873#1 ---------- consensus_6873#2 ---------- consensus_6873#3 ---------- consensus_6873#0 TAGTGTCAAA 833 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||