These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1227 fasta sequence [GCCGCGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGGCGGCGAATCCTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAACCGGAGTTCAGAGTGGGGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGCTCCATGCTGGTAGCATATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTGCCATACATACTTCCAGTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAGCTTCGCTTCATTATGGCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGCAGAATATATAATAACAGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGTGGCTTTCTTTCCAGTCTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTATCCTGGTGGATATGCTCTAAAGGCTCTACA] [+] EMBL CB622594 [GCCGCGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATA ] [+] EMBL CB617966 [GCCCCTGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGGAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCCAATGTTGTGTAAGCACTGCCATTAT ] [+] EMBL AK069661 [ CGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGAGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCAAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGGCGGCGAATCCTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAACCGGAGTTCAGAGTGGGGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGCTCCATGCTGGTAGCATATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTGCCATACATACTTCCAGTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAGCTTCGCTTCATTATGGCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGCAGAATATATAATAACAGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGTGGCTTTCTTTCCAGTCTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTATCCTGGTGGATATGCTCTAAAGGCTCTACA] consensusID : consensus_6878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence [CTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGGTAATACTATGTTCACTTGAAGCCTTGATCTGTGCACTATGCTACAATTTTTCCGCTAATGACCATTGCTTGGCTCAAGCATAATGAAATGGCAAGTAGATGGTCAAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGG] [+] EMBL CB628379 [CTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGGTAATACTATGTTCACTTGAAGCCTTGATCTGTGCACTATGCTACAATTTTTCCGCTAATGACCATTGCTTGGCTCAAGCATAATGAAATGGCAAGTAGATGGTCAAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6878#0 GCCGCGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTT 60 consensus_6878#1 ---------------------CTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTT 39 *************************************** consensus_6878#0 GCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTA 120 consensus_6878#1 GCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTA 99 ************************************************************ consensus_6878#0 CGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACAC 180 consensus_6878#1 CGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACAC 159 ************************************************************ consensus_6878#0 CAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCA 240 consensus_6878#1 CAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCA 219 ************************************************************ consensus_6878#0 TATTGAGAAG-------TATGATCATTTAGAA--------------------------TT 267 consensus_6878#1 TATTGAGAAGGTAATACTATGTTCACTTGAAGCCTTGATCTGTGCACTATGCTACAATTT 279 ********** **** *** ** * ** consensus_6878#0 TCCTGGTGTTGTCC----CTCGG-TCATTTATA------------------------GGC 298 consensus_6878#1 TTCCGCTAATGACCATTGCTTGGCTCAAGCATAATGAAATGGCAAGTAGATGGTCAAGGC 339 * * * * ** ** ** ** *** *** *** consensus_6878#0 GCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTT 358 consensus_6878#1 GCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTT 399 ************************************************************ consensus_6878#0 CCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACT 418 consensus_6878#1 CCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACT 459 ************************************************************ consensus_6878#0 TTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTAT 478 consensus_6878#1 TTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTAT 519 ************************************************************ consensus_6878#0 CTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAAT 538 consensus_6878#1 CTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAAT 579 ************************************************************ consensus_6878#0 GTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGA 598 consensus_6878#1 GTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGA 639 ************************************************************ consensus_6878#0 CGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTT 658 consensus_6878#1 CGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTT 699 ************************************************************ consensus_6878#0 CTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATC 718 consensus_6878#1 CTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATC 759 ************************************************************ consensus_6878#0 AAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATA 778 consensus_6878#1 AAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATA 819 ************************************************************ consensus_6878#0 CTGTGGCGGCGAATCCTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAAC 838 consensus_6878#1 CTGTGG------------------------------------------------------ 825 ****** consensus_6878#0 CGGAGTTCAGAGTGGGGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGC 898 consensus_6878#1 ------------------------------------------------------------ consensus_6878#0 TCCATGCTGGTAGCATATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTG 958 consensus_6878#1 ------------------------------------------------------------ consensus_6878#0 CCATACATACTTCCAGTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAG 1018 consensus_6878#1 ------------------------------------------------------------ consensus_6878#0 CTTCGCTTCATTATGGCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGC 1078 consensus_6878#1 ------------------------------------------------------------ consensus_6878#0 AGAATATATAATAACAGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGT 1138 consensus_6878#1 ------------------------------------------------------------ consensus_6878#0 GGCTTTCTTTCCAGTCTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTAT 1198 consensus_6878#1 ------------------------------------------------------------ consensus_6878#0 CCTGGTGGATATGCTCTAAAGGCTCTACA 1227 consensus_6878#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||