These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1697 fasta sequence [GATGCGATGATCTTAAAATATAGTATTGAGTATTGATTTCAATCATTTCTCCCTTTTATCTTTACATGTAATGTTGGCTAGAAAATTTATTATCATGCCATGTATACTCCTTTTATTCAGACAAGCAATTAGCCAGAAAATCATTGCAAATACCAATTGGTACCATGGACCTTGTACTACAATATCCTACACAATGCAGCAGCACATCTTCTACCTTGTTACTACCTGGTAGCCGTCGCATAGAAGCGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGTGGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCCGCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCATTAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTATGATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGGTACAGATGTTTGAAAACCGAGCTTGAAAAATTGATGATGTAGAGCAGATCAGCAGATTCTACGGACTTCTCCATTCAGCAAAGGGAATGATGCTGAGAATTTCAGTGTAGTTAATGATGTATAGCACAATGTTCTTGAAGGGAGTAGAAAAGGAGGGGTGGGAAGCCAAAGGGAACTCTTGAGAAGAAAAGAGAAACCCAATTCATAAGGGCACCCGCA] [-] EMBL AK110729 [GATGCGATGATCTTAAAATATAGTATTGAGTATTGATTTCAATCATTTCTCCCTTTTATCTTTACATGTAATGTTGGCTAGAAAATTTATTATCATGCCATGTATACTCCTTTTATTCAGACAAGCAATTAGCCAGAAAATCATTGCAAATACCAATTGGTACCATGGACCTTGTACTACAATATCCTACACAATGCAGCAGCACATCTTCTACCTTGTTACTACCTGGTAGCCGTCGCATAGAAGCGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGGGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTC ] [+] EMBL AK070306 [ ATCCTACACAATGCAGCAGCACATCTTCTACCTTGTTACTACCTGGTAGCCGTCGCATAGAAGCGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTAGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGACCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGTGGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCCGCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCATTAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTATGATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGGTACAGATGTTTGAAAACCGAGCTTGAAAAATTGATGATGTAGAGCAGAT ] [+] EMBL AK105597 [ CGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTTGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGGCGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGTGGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCCGCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCATTAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTGTGATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGGTACAGATGT AAACCGAGCTTGAAAAATTGATGATGTAGAGCAGATCAGCAGATTCTACGGACTTCTCCATTCAGCAAAGGGAATGATGCTGAGAATTTCAGTGTAGTTAATGATGTATAGCACAATGTTCTTGAAGGGAGTAGAAAAGGAGGGGTGGGAAGCCAAAGGGAACTCTTGAGAAGAAAAGAGAAACCCAATTCATAAGGGCACCCGCA] consensusID : consensus_6880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [TATCATGCCATGTATACTCCTTTTATTCAGACCAAGCAATTAGCCAGAAAATCATTGTGGAAATACCCAATTTGTGTACCCATGGACCTTGGTACTACAATATCCTACACAATTGCAGCAGCACATCTTCTACCTTGGTTACTACCTGGTAGCCTGTCTGCATAAAAGCGGCTGAGTGCCGACCTTGTGTGCCAGACGGCGCTTGATGTCAGGGCTGACACCTGGTCGCGGAATATCCCTGTAGTGAAGAATGGTGCTGTAGACGCCTGCGC] [-] EMBL BI810327 [TATCATGCCATGTATACTCCTTTTATTCAGACCAAGCAATTAGCCAGAAAATCATTGTGGAAATACCCAATTTGTGTACCCATGGACCTTGGTACTACAATATCCTACACAATTGCAGCAGCACATCTTCTACCTTGGTTACTACCTGGTAGCCTGTCTGCATAAAAGCGGCTGAGTGCCGACCTTGTGTGCCAGACGGCGCTTGATGTCAGGGCTGACACCTGGTCGCGGAATATCCCTGTAGTGAAGAATGGTGCTGTAGACGCCTGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6880#0 GATGCGATGATCTTAAAATATAGTATTGAGTATTGATTTCAATCATTTCTCCCTTTTATC 60 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TTTACATGTAATGTTGGCTAGAAAATTTATTATCATGCCATGTATACTCCTTTTATTCAG 120 consensus_6880#1 ------------------------------TATCATGCCATGTATACTCCTTTTATTCAG 30 ****************************** consensus_6880#0 AC-AAGCAATTAGCCAGAAAATCATTGC--AAATACC-AATTGGTA---CCATGGACCTT 173 consensus_6880#1 ACCAAGCAATTAGCCAGAAAATCATTGTGGAAATACCCAATTTGTGTACCCATGGACCTT 90 ** ************************ ******* **** ** *********** consensus_6880#0 G-TACTACAATATCCTACACAAT-GCAGCAGCACATCTTCTACCTTG-TTACTACCTGGT 230 consensus_6880#1 GGTACTACAATATCCTACACAATTGCAGCAGCACATCTTCTACCTTGGTTACTACCTGGT 150 * ********************* *********************** ************ consensus_6880#0 AGCC-GTC-GCATAGAAGCGGCTGAG-GCCGACCTTG-GTGCC-GACGGC-CTTGATGTC 284 consensus_6880#1 AGCCTGTCTGCATAAAAGCGGCTGAGTGCCGACCTTGTGTGCCAGACGGCGCTTGATGTC 210 **** *** ***** *********** ********** ***** ****** ********* consensus_6880#0 --GGCCTGCACCTGCTCGCGGAAT-TCCCTGTAG--GAGAAGGGC-CTGTAGACGCCGCC 338 consensus_6880#1 AGGGCTGACACCTGGTCGCGGAATATCCCTGTAGTGAAGAATGGTGCTGTAGACGCCTGC 270 *** ****** ********* ********* **** ** *********** * consensus_6880#0 GCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCA 398 consensus_6880#1 GC---------------------------------------------------------- 272 ** consensus_6880#0 CGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGA 458 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGG 518 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCC 578 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGA 638 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGA 698 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGC 758 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATC 818 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 ATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAG 878 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 ATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGC 938 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAG 998 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCAC 1058 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGAC 1118 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTG 1178 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGT 1238 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCC 1298 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCAT 1358 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTAT 1418 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGG 1478 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TACAGATGTTTGAAAACCGAGCTTGAAAAATTGATGATGTAGAGCAGATCAGCAGATTCT 1538 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 ACGGACTTCTCCATTCAGCAAAGGGAATGATGCTGAGAATTTCAGTGTAGTTAATGATGT 1598 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 ATAGCACAATGTTCTTGAAGGGAGTAGAAAAGGAGGGGTGGGAAGCCAAAGGGAACTCTT 1658 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GAGAAGAAAAGAGAAACCCAATTCATAAGGGCACCCGCA 1697 consensus_6880#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||