cluster # 6882

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Oryza sativa
cluster # 6882 cluster # 6882 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6882#0 length = 779 sequences # 1

consensus_6882#1 length = 736 sequences # 3

consensusID : consensus_6882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [AATGGCCTTTCCTTAATTATCTTTTAGACCATGTTGATGTTATTTTCAACGACTGTTTAACTGTTCACCTATTTGTTATGATAATTAGTTTCTGACCATTTTATCATCATTTATATTCACAAATATCTAAAAAATGTTCAATCTCCATTATATATGTTCTTTGTACTTCTCTTTTGGCTAACATGCTTGTATTATGAACAGAGGCCGCAAATGGAATCCTCTTAGGCAGAGATTAGATAGCTATGACTATACAGTTGAACAACATGTAGTTGGTTCACTGTTGTTTACACCAGTCCTGGTTCTCCTACCCACAACCTCTATATTCTACATATTCTTTTCTATGTTGAGTACTGCAGTTATCTGTCTCTGCATACTTCTGGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGAGTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGTGATGTGGTCATCTGTATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAGGAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAACTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGCTTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGTTTGTACATTTTCCATCATTTTTGTGGTATACTATTGATAATATTTATTTTAACTTCTCTTGATTTCAGG]

[+] EMBL CB645379             [AATGGCCTTTCCTTAATTATCTTTTAGACCATGTTGATGTTATTTTCAACGACTGTTTAACTGTTCACCTATTTGTTATGATAATTAGTTTCTGACCATTTTATCATCATTTATATTCACAAATATCTAAAAAATGTTCAATCTCCATTATATATGTTCTTTGTACTTCTCTTTTGGCTAACATGCTTGTATTATGAACAGAGGCCGCAAATGGAATCCTCTTAGGCAGAGATTAGATAGCTATGACTATACAGTTGAACAACATGTAGTTGGTTCACTGTTGTTTACACCAGTCCTGGTTCTCCTACCCACAACCTCTATATTCTACATATTCTTTTCTATGTTGAGTACTGCAGTTATCTGTCTCTGCATACTTCTGGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGAGTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGTGATGTGGTCATCTGTATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAGGAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAACTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGCTTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGTTTGTACATTTTCCATCATTTTTGTGGTATACTATTGATAATATTTATTTTAACTTCTCTTGATTTCAGG]




>consensus_6882#0
AATGGCCTTTCCTTAATTATCTTTTAGACCATGTTGATGTTATTTTCAACGACTGTTTAA
CTGTTCACCTATTTGTTATGATAATTAGTTTCTGACCATTTTATCATCATTTATATTCAC
AAATATCTAAAAAATGTTCAATCTCCATTATATATGTTCTTTGTACTTCTCTTTTGGCTA
ACATGCTTGTATTATGAACAGAGGCCGCAAATGGAATCCTCTTAGGCAGAGATTAGATAG
CTATGACTATACAGTTGAACAACATGTAGTTGGTTCACTGTTGTTTACACCAGTCCTGGT
TCTCCTACCCACAACCTCTATATTCTACATATTCTTTTCTATGTTGAGTACTGCAGTTAT
CTGTCTCTGCATACTTCTGGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGA
GTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGT
GATGTGGTCATCTGTATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAG
GAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAA
CTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGC
TTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGTTTGTACATTT
TCCATCATTTTTGTGGTATACTATTGATAATATTTATTTTAACTTCTCTTGATTTCAGG

consensusID : consensus_6882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 736
fasta sequence

                              [TATATTCTACATATTCTTTTCTATGTGGAGTACTGCAGTTATCTGTCTCTGCATACTTCTGGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGAGTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGTGATGTGGTCATCTGTATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAGGAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAACTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGCTTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGGTACCAACGACGCTGCACCTGCAGTTTTCACTGTTCCCTTGGATGCATCTTGGCATTCGACACTATTGGTTGCTGTGCCGTGATTCTGTCCTTTCATGCGCACCAAAGAGGTGATTCTGTCCTTTCATGCGCACCGAAGAGGTTACAGTAGTTTCTACCGTACTGATATAATTTTTTTTGACAGTAGTACTGATATAATTTTTAAGAAAGCTTGTTTTACTTGCGACATGTCATGGTGCACCACTACTTAGTTGTGGTTATTGTAATGTGGTTATTGAAATACTATTCACTCATAGTCATAGTTATTACATTTGCTGTCCTTTTTCGGTAAAAAAAAAATAAGGA]

[-] EMBL CB633316             [TATATTCTACATATTCTTTTCTATGTGGAGTACTGCAGTTATCTGTCTCTGCATACTTCTGGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGAGTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGTGATGTGGTCATCTGTATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAGGAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAACTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGCTTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGGTACCAACGACGCTGCACCTGCAGTTTTCACTGTTCCCTTGGATGCATCTTGGCATTCGACACTATTGGTTGCTGTGCCGTGATTCTGTCCTTTCATGCGCACCAAAGAGGTGATTCTGTCCTTTCATGCGCACCGAAGAGGTTACAGTAGTTTCTACCGTACTGATATAATTTTTTTTGACAGTAGTACTGATATAATTTTTAAGAAAGCTTGTTTTACTTGCGACATGTCATGGTGCACCACTACTTAGTTGTGGTTATTGTAATGTGGTTATTGAAATACTATTCACTCATAGTCATAGGTATTACATTTGCTGTCCTTTTTCGGTAAAAAAAAAATAAGGA]
[+] EMBL AU092082             [                                                  GCATACTTCTGGAAATCCCAGTATCTATAATTCACTCTACTCCTTATGCTGAGTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGTGATGTGGTCATCTG ATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAGGAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAACTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGCTTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGGTACCAACGACGCTGCACCTGCAGTTTTCACTGTTCCCTTGGATGCATCTTGGCATTCGACACTATTGGTTGCTGTGCCGTGATTCTGTCCTTTCATGCGCACCAAAGAGGTGATTCTGTCCTTTCATGCGCACCGAAGAGGTTACAGTAGTTTCTACCGTACTGATATAATTTTTTTTGACAGTAGTACTGATATAATTTTTAAGAAAGCTTGTTTTACTTGCGACATGTCATGGTGCACCACTACTTAGTTGTGGTTATTGTAATGTGGTTATTGAAATACTATTCACTCATAGTCATAGTTATTACATTTGCTGTCCTTTTTCGGTAAAAAA          ]
[-] EMBL CB636242             [                                                                                                                                AAAAATTTCCCAATGGATTATTTTTCCATCCTGTGATGTGGTCATCTGTATCTGCTGTTGATGGTAATGGCCTCTTATCAACCAAAGGTTATAGGAAAACGGAGCATTTTGTCCTTGGCAAGTCAGACCCTTTAGTGTCAGAACTTTGCTGTAATTATGCCCCCTTCGGGCACATAATCAGCCCGCATTACCGGAAAATTTTCAACGGGGTTGCTTTATCATTTTGCAAACAGTTGGGGTATGGAATCCTTAGCGGTGAAAGGGTACCAACGACGCTGCACCTGCAGTTTTCACTGTTCCCTTGGATGCATCTTGGCATTCGACACTATTGGTTGCTGTGCCGTGATTTTGTCCTTTCATGCGCACCAAAAAGGTGATTTTGTCCTTTCATGCGCCCCGAAGAGGTTACAGTAGTTTTTCCCGTACTGAAAAAAAAATTTTTGACAGTAGTACTGATATAATTTTTAAGAAAGCTTGTTTTACTTGCGACATGTCATGGTGCCCCACTACTTAGTTGTGGTTATTGTAATGTGGTTATTGAAATACTATTCACTCATAGTCGTAGTTATTACATTTG                               ]




>consensus_6882#1
TATATTCTACATATTCTTTTCTATGTGGAGTACTGCAGTTATCTGTCTCTGCATACTTCT
GGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGAGTTAATTATGTGGGTGGC
AAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGTGATGTGGTCATCTGTATC
TGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAGGAAAACGGAGCATCTTGT
CCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAACTATGCCACCTTCGGGCA
CATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGCTTTATCATTCTGCAAACA
GTTGGCGTATGGAATCCTTAGCGGTGAAAGGGTACCAACGACGCTGCACCTGCAGTTTTC
ACTGTTCCCTTGGATGCATCTTGGCATTCGACACTATTGGTTGCTGTGCCGTGATTCTGT
CCTTTCATGCGCACCAAAGAGGTGATTCTGTCCTTTCATGCGCACCGAAGAGGTTACAGT
AGTTTCTACCGTACTGATATAATTTTTTTTGACAGTAGTACTGATATAATTTTTAAGAAA
GCTTGTTTTACTTGCGACATGTCATGGTGCACCACTACTTAGTTGTGGTTATTGTAATGT
GGTTATTGAAATACTATTCACTCATAGTCATAGTTATTACATTTGCTGTCCTTTTTCGGT
AAAAAAAAAATAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6882#0      AATGGCCTTTCCTTAATTATCTTTTAGACCATGTTGATGTTATTTTCAACGACTGTTTAA 60
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      CTGTTCACCTATTTGTTATGATAATTAGTTTCTGACCATTTTATCATCATTTATATTCAC 120
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      AAATATCTAAAAAATGTTCAATCTCCATTATATATGTTCTTTGTACTTCTCTTTTGGCTA 180
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      ACATGCTTGTATTATGAACAGAGGCCGCAAATGGAATCCTCTTAGGCAGAGATTAGATAG 240
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      CTATGACTATACAGTTGAACAACATGTAGTTGGTTCACTGTTGTTTACACCAGTCCTGGT 300
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      TCTCCTACCCACAACCTCTATATTCTACATATTCTTTTCTATGTTGAGTACTGCAGTTAT 360
consensus_6882#1      ------------------TATATTCTACATATTCTTTTCTATGTGGAGTACTGCAGTTAT 42
                                        ************************** ***************

consensus_6882#0      CTGTCTCTGCATACTTCTGGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGA 420
consensus_6882#1      CTGTCTCTGCATACTTCTGGAAATCACAGTATCTATAATTCACTCTACTCCTTATGCTGA 102
                      ************************************************************

consensus_6882#0      GTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGT 480
consensus_6882#1      GTTAATTATGTGGGTGGCAAGGAGGCAAAGATTTCCTACTGGATTATTCTTCCATCCTGT 162
                      ************************************************************

consensus_6882#0      GATGTGGTCATCTGTATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAG 540
consensus_6882#1      GATGTGGTCATCTGTATCTGCTGTTGATGGTGATGGCCTCTTATCAACCAAAGGTTATAG 222
                      ************************************************************

consensus_6882#0      GAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAA 600
consensus_6882#1      GAAAACGGAGCATCTTGTCCTTGGCAAGTCAGAACCTTTAGTGTCAGAACTTTGCTGTAA 282
                      ************************************************************

consensus_6882#0      CTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGC 660
consensus_6882#1      CTATGCCACCTTCGGGCACATAATCAGACCGCATTACCGGAAAATTTTCAACGGGGTTGC 342
                      ************************************************************

consensus_6882#0      TTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGTTTGTAC--AT 718
consensus_6882#1      TTTATCATTCTGCAAACAGTTGGCGTATGGAATCCTTAGCGGTGAAAGGGTACCAACGAC 402
                      ************************************************* *   *   * 

consensus_6882#0      TTTCCATC----ATTTTTGTGGTATACTATTGATA-ATATTTATTTTAACTTCTCTTGAT 773
consensus_6882#1      GCTGCACCTGCAGTTTTCACTGTTCCCT-TGGATGCATCTTGGCATTCGACACTATTGGT 461
                        * ** *     ****    **   ** * ***  ** **    **     ** *** *

consensus_6882#0      TTCAGG------------------------------------------------------ 779
consensus_6882#1      TGCTGTGCCGTGATTCTGTCCTTTCATGCGCACCAAAGAGGTGATTCTGTCCTTTCATGC 521
                      * * *                                                       

consensus_6882#0      ------------------------------------------------------------
consensus_6882#1      GCACCGAAGAGGTTACAGTAGTTTCTACCGTACTGATATAATTTTTTTTGACAGTAGTAC 581
                                                                                  

consensus_6882#0      ------------------------------------------------------------
consensus_6882#1      TGATATAATTTTTAAGAAAGCTTGTTTTACTTGCGACATGTCATGGTGCACCACTACTTA 641
                                                                                  

consensus_6882#0      ------------------------------------------------------------
consensus_6882#1      GTTGTGGTTATTGTAATGTGGTTATTGAAATACTATTCACTCATAGTCATAGTTATTACA 701
                                                                                  

consensus_6882#0      -----------------------------------
consensus_6882#1      TTTGCTGTCCTTTTTCGGTAAAAAAAAAATAAGGA 736