Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6884 cluster # 6884       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6884#0 length = 1549 sequences # 4  
consensusID : consensus_6884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1549
fasta sequence 
                              [ATGACAAAATCATTGTGCTTACACCGAACAACGTTCTTAAGTTCTCTTACTCATCAAGAAGCACCCAGACATTTTACAAGAGCAAGCATGTCAAATCTCTAGCTGTGGCTCATGGCAAAGCTTATCTTGGTTGCACAGACTTGAGTATACAGGAATTAGACGTAGCAGTGGGGTCAAAAATCGAGATAAGAGCACCTACAAGAAGCTGGCGAATTAGGAAACAACCCATTAGTTCCATTGTAGTATATAAAGATTGGATGTACTGTGCTGGTACTCAAGTGGAAGGATCCACCATAAAGGACTGGAAGAAGCGATGCAAACCTACAATGACGATGGCGATATCAAAGGGAACAAATGTAGAGGCAATGGCAGTGGTGGAGGACTTCATCTACCTGAACTGCGACAAAAGCCCTAGTATCATTCAGATATGGTTGAGAGAGAATCAGCAGAAAGTAGGGAGGCTATCTGCAGGGAACAAGATCACGAGCATGTTCACCGCAAATGACATTATTTTCTGCGGGACTGAAACCGGATTAATCAAGGCATGGATCCCTTTCTGAAGGGACATACAGGAGCAAAGACCAAAAAAAGGCTCAATTATGTAAATGGTTAAATGCAACAACATGAGAGTATGTATGTACAGAAGAGAAAAAAATAGCAGGTAAAAAGAAAAAGAAAGGCATACCATTGTACAAGGTGATCGATCCCTCTGGAGGACAAACCAGCGTGCATAAACTCCGTGATCACCGATTTCTACAGAGCAATGAGTAGCATTAGTAGCAGCAGCAGAGGCTTCACAATGTAAATATAGATATAGATTTTGTGTGTGTTTTTTTCCTTTTTCTACTTGGATTTTGGAAAAGATAGCGATTGTGTATGCTAATACTACCTGATACTGCCTCCTTCATAGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAATAAGAAGGGGGGAAAAGGAGAGCACTCAGCACCTGTAATAATGGCTTTTCGCGGCCCCTCGGAGGCCCTCTGTTCAAAACGTCACCGAACTGAGAAAAACGGGGGGGGCCCCTCCTTTTTTACCTTTGAAAAAAGAGAAATTTTGAAAGCTTCGTTATTCCCGAAAGGTTTCCCCCTCTTCCGTCCTTTCAATATGTCTGCGCTCCTCCAAATGTCGAATGCGCCCCCCGCTTTCCCTCGTGNCCTAAAGGCGGGGAGGGGAGGGTGGCCCCCGCCCCCCCNCTTTTCCCAATAATACGAGTCGCCCCCTTTGGTTTATATCTTCCCCTCTCTTCCCCCCTCTTTATTTTTATCGAGGGGGGGGGTTTTTCACCCCCAACCCCTCTACCTTCACGCGCTCCCNGCGGCCGGATCACCGCCATATTTTATGTATAAAACCGTCATTTTTTATACCCAATATGTTACCTCCCCCCCCATCTCACTCTCATCCCCCCGATACACCCGATTAGAAACCCCCCACATTCTGCAATCTGGCTCCATCTTCTTGCCCCGGTTGTCCTGCGTAC]

[-] EMBL CB646091             [ATGACAAAATCATTGTGCTTACACCGAACAACGTTCTTAAGTTCTCTTACTCATCAAGAAGCACCCAGACATTTTACAAGAGCAAGCATGTCAAATCTCTAGCTGTGGCTCATGGCAAAGCTTATCTTGGTTGCACAGACTTGAGTATACAGGAATTAGACGTAGCAGTGGGGTCAAAAATCGAGATAAGAGCACCTACAAGAAGCTGGCGAATTAGGAAACAACCCATTAGTTCCATTGTAGTATATAAAGATTGGATGTACTGTGCTGGTACTCAAGTGGAAGGATCCACCATAAAGGACTGGAAGAAGCGATGCAAACCTACAATGACGATGGCGATATCAAAGGGAACAAATGTAGAGGCAATGGCAGTGGTGGAGGACTTCATCTACCTGAACTGCGACAAAAGCCCTAGTATCATTCAGATATGGTTGAGAGAGAATCAGCAGAAAGTAGGGAGGCTATCTGCAGGGAACAAGATCACGAGCATGTTCACCGCAAATGACATTATTTTCTGCGGGACTGAAACCGGATTAATCAAGGCATGGATCCCTTTCTGAAGGGACATACAGGAGCAAAGACCAAAAAAAGGCTCAATTATGTAAATGGTTAAATGCAACAACATGAGAGTATGTATGTACAGAAGAGAAAAAAATAGCAGGTAAAAAGAAAAAGAAAGGCATACCATTGTACAAGGTGATCGATCCCTCTGGAGGACAAACCAGCGTGCATAAACTCCGTGATCACGGGTTTCTACAGAGCAATGAGTAGCATTAGTAGCAaataaaagg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB637271             [                                                                                                                                                                                                                                                                                                                               ACCTACAATGACGATGGCGATATCAAAGGGAACAAATGTAGAGGCAATGGCAGTGGTGGAGGACTTCATCTACTTGAACTGCGACAAAAGCCCTAGTATCATTCAGATATGGTTGAGAGAGAATCAGCAGAAAGTAGGGAGGCTATCTGCAGGGAACAAGATCACGAGCATGTTCACCGCAAATGACATTATTTTCTGCGGGACTGAAACCGGATTAATCAAGGCATGGATCCCTTTCTGAAGGGACATACAGGAGCAAAGACCAAAAAAAGGCTCAATTATGTAAATGGTTAAATGCAACAACATGAGAGTATGTATGTACAGAAGAGAAAAAAATAGCAGGTAAAAAGAAAAAGAAAGGCATACCATTGTACAAGGTGATCGATCCCTCTGGAGGACAAACCAGCGTGCATAAACTCCGTGATCACCGATTTCTACAGAGCAATGAGTAGCATTAGTAGCAGCAGCAGAGGCTTCACAATGTAAATATAGATATAGATTTTGTGTGTGTTTTTTTCCTTTTTCTACTTGGATTTTGGAAAAGATAGCGATTGTGTATGCTAATACTACCTGATACTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU032045             [                                                                                                                                                                                                                                                                                                                                                                                                                     AAAGNCCTAGTATCATTCAGNTATGNTTGAGNGNGAATCAGCAGAAAGTAGGGAGGNTATCTGCAGGGAACAAGNTCACGAGCATGTTCACCGCNAATGACATTATTTTCTGCGGGACTGAAACCGGATTAATCAAGGCATGGATCCCTTTCTGAAGGGACATACAGGAGCAAAGACCAAAAAAAGGCTCAATTATGTAAATGGTTAAATGCAACAACATGAGAGTATGTATGTACAGAAGAGAAAAAAATAGCAGGTAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA757967             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATACCATTGTACAAGGTGATCGATCCCTCTGGAGGACAAACCAGCGTGCATAAACTCCGTGATCACCGATTTCTACAGAGCAATGAGTAGCATTAGTAGCAGCAGCAGAGGCTTCACAATGTAAATATAGATATAGATTTTGTGTGTGTTTTTTTCCTTTTTCTACTTGGATTTTGGAAAAGATAGCGATTGTGTATGCTAATACTACCTGATACTGCCTCCTTCATAGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAATAAGAAGGGGGGAAAAGGAGAGCACTCAGCACCTGTAATAATGGCTTTTCGCGGCCCCTCGGAGGCCCTCTGTTCAAAACGTCACCGAACTGAGAAAAACGGGGGGGGCCCCTCCTTTTTTACCTTTGAAAAAAGAGAAATTTTGAAAGCTTCGTTATTCCCGAAAGGTTTCCCCCTCTTCCGTCCTTTCAATATGTCTGCGCTCCTCCAAATGTCGAATGCGCCCCCCGCTTTCCCTCGTGNCCTAAAGGCGGGGAGGGGAGGGTGGCCCCCGCCCCCCCNCTTTTCCCAATAATACGAGTCGCCCCCTTTGGTTTATATCTTCCCCTCTCTTCCCCCCTCTTTATTTTTATCGAGGGGGGGGGTTTTTCACCCCCAACCCCTCTACCTTCACGCGCTCCCNGCGGCCGGATCACCGCCATATTTTATGTATAAAACCGTCATTTTTTATACCCAATATGTTACCTCCCCCCCCATCTCACTCTCATCCCCCCGATACACCCGATTAGAAACCCCCCACATTCTGCAATCTGGCTCCATCTTCTTGCCCCGGTTGTCCTGCGTAC]




>consensus_6884#0
ATGACAAAATCATTGTGCTTACACCGAACAACGTTCTTAAGTTCTCTTACTCATCAAGAA
GCACCCAGACATTTTACAAGAGCAAGCATGTCAAATCTCTAGCTGTGGCTCATGGCAAAG
CTTATCTTGGTTGCACAGACTTGAGTATACAGGAATTAGACGTAGCAGTGGGGTCAAAAA
TCGAGATAAGAGCACCTACAAGAAGCTGGCGAATTAGGAAACAACCCATTAGTTCCATTG
TAGTATATAAAGATTGGATGTACTGTGCTGGTACTCAAGTGGAAGGATCCACCATAAAGG
ACTGGAAGAAGCGATGCAAACCTACAATGACGATGGCGATATCAAAGGGAACAAATGTAG
AGGCAATGGCAGTGGTGGAGGACTTCATCTACCTGAACTGCGACAAAAGCCCTAGTATCA
TTCAGATATGGTTGAGAGAGAATCAGCAGAAAGTAGGGAGGCTATCTGCAGGGAACAAGA
TCACGAGCATGTTCACCGCAAATGACATTATTTTCTGCGGGACTGAAACCGGATTAATCA
AGGCATGGATCCCTTTCTGAAGGGACATACAGGAGCAAAGACCAAAAAAAGGCTCAATTA
TGTAAATGGTTAAATGCAACAACATGAGAGTATGTATGTACAGAAGAGAAAAAAATAGCA
GGTAAAAAGAAAAAGAAAGGCATACCATTGTACAAGGTGATCGATCCCTCTGGAGGACAA
ACCAGCGTGCATAAACTCCGTGATCACCGATTTCTACAGAGCAATGAGTAGCATTAGTAG
CAGCAGCAGAGGCTTCACAATGTAAATATAGATATAGATTTTGTGTGTGTTTTTTTCCTT
TTTCTACTTGGATTTTGGAAAAGATAGCGATTGTGTATGCTAATACTACCTGATACTGCC
TCCTTCATAGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAAAAAGAAAAATAAGAAGGGGGGAAAAGGAGAGCACTCAGCACCTGTA
ATAATGGCTTTTCGCGGCCCCTCGGAGGCCCTCTGTTCAAAACGTCACCGAACTGAGAAA
AACGGGGGGGGCCCCTCCTTTTTTACCTTTGAAAAAAGAGAAATTTTGAAAGCTTCGTTA
TTCCCGAAAGGTTTCCCCCTCTTCCGTCCTTTCAATATGTCTGCGCTCCTCCAAATGTCG
AATGCGCCCCCCGCTTTCCCTCGTGNCCTAAAGGCGGGGAGGGGAGGGTGGCCCCCGCCC
CCCCNCTTTTCCCAATAATACGAGTCGCCCCCTTTGGTTTATATCTTCCCCTCTCTTCCC
CCCTCTTTATTTTTATCGAGGGGGGGGGTTTTTCACCCCCAACCCCTCTACCTTCACGCG
CTCCCNGCGGCCGGATCACCGCCATATTTTATGTATAAAACCGTCATTTTTTATACCCAA
TATGTTACCTCCCCCCCCATCTCACTCTCATCCCCCCGATACACCCGATTAGAAACCCCC
CACATTCTGCAATCTGGCTCCATCTTCTTGCCCCGGTTGTCCTGCGTAC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)