These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [TTTTTGTTTTTTTTCTCCAATTTGTTGGATATAATCACCCCTTGAAGTACAAGTTTAATATTCGGTTTGCTATTACATATATACGCCTAATTAAACACATGCAAGACAATCAAATCATCCAATGAAATGAATCGATCAATATCCTCCCCTAAACACGCAAATTAACCCCACCGGCCGATTCCAGTCCCAAATATAAACAAGAAACAAAGCCGTACGTGTACGTATGTACCACACGAGTATACCACATCATCACCACCACTATGAAGAAACCAACAATCAACTAGCTGTACAAATAACAGGATCAGACGACGGCGATCGACATGGATGGATCCCATCAAATCAGATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAAACGAGGGCGGAGAGGGCGAGGCAAAGGAAGGCGAAAAAGGCCATGCTGATGGACGCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGTTATCGGGATCGCCGCCGACACCGCCGACATCAGCAGGTACGCCGTCACCTGCAGTAGCACCATATGCGTATCGAAACCACGATAAAACATTAGTGTTTTAGCGTGCATTGTATATATACTAGCTTCATTTTTTAATATATAATGCACAACACGTTTAATCATTTATTTTATTTCAAAAATAGTTAATTATTATACATTTGTTGTGGGTTGTTTTATCGTTAAAAATACTTTAAGCATAATTTATATATTATATATTTTTTTCAAAACTTTTGAATAAGATAATGGTTAAGCATGTGTTAAAAATTAACTATG] [+] EMBL CB672461 [TTTTTGTTTTTTTTCTCCAATTTGTTGGATATAATCACCCCTTGAAGTACAAGTTTAATATTCGGTTTGCTATTACATATATACGCCTAATTAAACACATGCAAGACAATCAAATCATCCAATGAAATGAATCGATCAATATCCTCCCCTAAACACGCAAATTAACCCCACCGGCCGATTCCAGTCCCAAATATAAACAAGAAACAAAGCCGTACGTGTACGTATGTACCACACGAGTATACCACATCATCACCACCACTATGAAGAAACCAACAATCAACTAGCTGTACAAATAACAGGATCAGACGACGGCGATCGACATGGATGGATCCCATCAAATCAGATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAAACGAGGGCGGAGAGGGCGAGGCAAAGGAAGGCGAAAAAGGCCATGCTGATGGACGCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGTTATCGGGATCGCCGCCGACACCGCCGACATCAGCAGGTACGCCGTCACCTGCAGTAGCACCATATGCGTATCGAAACCACGATAAAACATTAGTGTTTTAGCGTGCATTGTATATATACTAGCTTCATTTTTTAATATATAATGCACAACACGTTTAATCATTTATTTTATTTCAAAAATAGTTAATTATTATACATTTGTTGTGGGTTGTTTTATCGTTAAAAATACTTTAAGCATAATTTATATATTATATATTTTTTTCAAAACTTTTGAATAAGATAATGGTTAAGCATGTGTTAAAAATTAACTATG] consensusID : consensus_6885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [ATCATATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAGACGAGGGCGGAGAGGGCGAGACAGAGGAAGGCGAAGAAGGCCATGGTGATGGACTCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGCTATCCGGATCGCCGCAGACACCGCTGACATCAGCAGTTACGCCGTCACCTGATCTCCGGCGAAGTCGACGAGTACGGCGACCTTGCCCTGCAGGTCTTGCCCGCCGGTGAGCCGTACGCCGTGCCGCACCAGTTGCAGCGTCGTGTAGATGAA-GGCGAGCACCCCGATCGCGACCACGTACCTGTACTCCTCGTAGTGCTCGAACTGCCTCCAGTCGCCGTGGTCGTTGGCGCCCATGACGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCCTGCCGCCGCCAGCGCCGCACCACGGCGCTCACCACGCCCTCGCCCGACGCCGCCGCCGCCGCCGGGGCGCCGCCGCCGTCGACGTTGGCGTCTGCGGCCGCGGCGCCCTTCTCGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGCGCGTTCTCGGGGACGGATTCGCGGAGT] [-] EMBL CB628271 [ATCATATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAGACGAGGGCGGAGAGGGCGAGACAGAGGAAGGCGAAGAAGGCCATGGTGATGGACTCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGCTATCCGGATCGCCGCAGACACCGCTGACATCAGCAGTTACGCCGTCACCTGATCTCCGGCGAAGTCGACGAGTACGGCGACCTTGCCCTGCAGGTCTTGCCCGCCGGTGAGCCGTACGCCGTGCCGCACCAGTTGCAGCGTCGTGTAGATGAA GGCGAGCACCCCGATCGCGACCACGTACCTGTACTCCTCGTAGTGCTCGAACTGCCTCCAGTCGCCGTGGTCGTTGGCGCCCATGACGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCCTGCCGCCGCCAGCGCCGCACCACGGCGCTCACCACGCCCTCGCCCGACGCCGCCGCCGCCGCCGGGGCGCCGCCGCCGTCGACGTTGGCGTCTGCGGCCGCGGCGCCCTTCTCGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGC ] [-] EMBL CB672460 [ GCCCTGCAGGTCCTGGCCGCCGGTGAGCCGTACGCCGTGCCGCACCAGCTGCAGCGTCGTGTAGATGAAGGGCGAGCACCCCGATCGCGACCACGTACCTGTACTCCTCGTAGTGCTCGAACTGCCTCCAGTCGCCGTGGTCGTTGGCGCCCATGACGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCCTGCCGCCGCCAGCGCCGCACCACGGCGCTCACCACGCCCTCGCCCGACGCCGCCGCCGCCGCCGGGGCGCCGCCGCCGTCGACGTTGGCGTCTGCGGCCGCGGCGCCCTTCTCGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGCGCGTTCTCGGGGACGGATTCGCGGAGT] consensusID : consensus_6885#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [ACGCCAGTGCCAGCACACAGCTGCAGCGTCGTGTAGATGAAGGCGAGCACCCCGATCGCGACCACGTACCTGTACTCACTCGTAGTGCTCGAACTGCCATCACAGTCAGCCAGTGGTCAGTTGGCGCCCATGACAGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCCCGACCCGGACTTCTCCAGGAGGTCACATGCCACCAGCCAGCAGCCGCACCACGGCAGCTCACAACGCCCTCGCCACGACGCCAGCCAGCCGCCGCCGGGGCACCACCAGCCGTCGACGTTGGCGTCTCCGCCGCTTAGAGAATCCAAGCTACGTAC] [+] EMBL BI810282 [ACGCCAGTGCCAGCACACAGCTGCAGCGTCGTGTAGATGAAGGCGAGCACCCCGATCGCGACCACGTACCTGTACTCACTCGTAGTGCTCGAACTGCCATCACAGTCAGCCAGTGGTCAGTTGGCGCCCATGACAGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCCCGACCCGGACTTCTCCAGGAGGTCACATGCCACCAGCCAGCAGCCGCACCACGGCAGCTCACAACGCCCTCGCCACGACGCCAGCCAGCCGCCGCCGGGGCACCACCAGCCGTCGACGTTGGCGTCTCCGCCGCTTAGAGAATCCAAGCTACGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6885#1 ATCATATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAGACGAGGGCGGAGAGGGCGAGAC 60 consensus_6885#2 ------------------------------------------------------------ consensus_6885#0 -----TTTTTGTTTTTTTTCTCCAATTTGTTGGATATAATCACCCCTTGAAGTACAAGTT 55 consensus_6885#1 AGAGGAAGGCGAAGAAGGCCATGGTGATGGACTCCGCCGACGAGTCGGTGAACACGTTGT 120 consensus_6885#2 ------------------------------------------------------------ consensus_6885#0 TAATATTCG-GTTTGCTATTACATATATACGCCTAATTAAACACATGCAAGACAATCAAA 114 consensus_6885#1 CCGCGCCTTCCCTCATCCTGTTCGCTATCCGGATCGCCGCAGACACCGCTGACATCAGCA 180 consensus_6885#2 ------------------------------------------------------------ consensus_6885#0 TCATCCAATGAAATGAATCGATCAATATCCTCCCCTAAACACGCAAATTAACCCCACCGG 174 consensus_6885#1 GTTACGCCGTCACCTGATCTCCGGCGAAGTCGACGAGTACGGCGACCTTGCCCTGCAGGT 240 consensus_6885#2 ------------------------------------------------------------ consensus_6885#0 CCGATTCCAGTCCCAAATATAAACAAGAAACAAAGCCGTACGTGTACGTATGTACCACAC 234 consensus_6885#1 CTTGCCCGCCGGTGAGCCGTACGCC-GTGCC-GCAC---CAGTTGCAGCGTCGTGTAGAT 295 consensus_6885#2 --------------------ACGCCAGTGCCAGCACA--CAGCTGCAGCGTCGTGTAGAT 38 consensus_6885#0 GAGTATACCACATCATCACCACCACTATGAAGAAACCAACAATCAACTAGCTGTACAAAT 294 ** * ** ** ** * ** * ** consensus_6885#1 GAAGGCGAGCACCCCGATCGCGACC-ACGTACCTGTACTC-CTCGTAGTGCTCGAACTGC 353 consensus_6885#2 GAAGGCGAGCACCCCGATCGCGACC-ACGTACCTGTACTCACTCGTAGTGCTCGAACTGC 97 consensus_6885#0 AACAG-GATCAGAC-GACGGCGATCGACATGGATGGATCCCATCAAATCAGATGTAG-GT 351 * * ** ** * ** **** * ** * ** * * ** * * * * consensus_6885#1 CTCCA--GTCGCC--GTGGTC-GTTGGCGCCCATGAC-GACGAAGGCGAGGAGGGAGAAG 407 consensus_6885#2 CATCACAGTCAGCCAGTGGTCAGTTGGCGCCCATGACAGACGAAGGCGAGGAGGGAGAAG 157 consensus_6885#0 CTGCTTGGCGAGCTTGAAGCC----GGAAACGAGGGCGGA-GAGGGCGAGGCAAAGGAAG 406 * * * * * * * ** * * * * ** ** ******* **** consensus_6885#1 GCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCC--TGCCGCC-GC 464 consensus_6885#2 GCCCACGCGGCGACGCGGAGC-CCGACCCGGACTTCTCCAGGAGGTCACATGCCACCAGC 216 consensus_6885#0 GCGAAAAAGGCCATGCTGATGGACGCCGCCGACGAGTCGGTGAACACGT-TGTCCGC-GC 464 ** * *** * ** ** ** * * *** ** ** * ** * * ** consensus_6885#1 CAGC-GCCGCACCACGGC-GCTCACCACGCCCTCGCC--CGACGCCGCC--GCCGCCGCC 518 consensus_6885#2 CAGCAGCCGCACCACGGCAGCTCACAACGCCCTCGCCA-CGACGCCAGCCAGCCGCCGCC 275 consensus_6885#0 CTTC--CCTCATCCTGTTCGTTATCGGGATCGCCGCCGACACCGCCGAC-ATCAGCAGGT 521 * * ** ** * * * * * * **** * **** * * ** * consensus_6885#1 GGGGCGCCGCC-GCCGT--CGACGTTGGCGTCTGCGG-CCGCGGCGCCCT-------TCT 567 consensus_6885#2 GGGGCACCACCAGCCGT--CGACGTTGGCGTCTCCG--CCGCTTAGAGAA-------TCC 324 consensus_6885#0 ACGCCGTCACCTGCAGTAGCACCATATGCGTATCGAAACCACGATAAAACATTAGTGTTT 581 * * * ** ** ** * * * **** * ** * * consensus_6885#1 CGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGCGCGT 627 consensus_6885#2 AAGCTACGTAC------------------------------------------------- 335 consensus_6885#0 TAGCGTGCATTGTATATATACTAGCTTCATTTTTTAATATATAATGCACAACACGTTTAA 641 * consensus_6885#1 TCTCGGGGACGGATTCGCGGAGT------------------------------------- 650 consensus_6885#2 ------------------------------------------------------------ consensus_6885#0 TCATTTATTTTATTTCAAAAATAGTTAATTATTATACATTTGTTGTGGGTTGTTTTATCG 701 consensus_6885#1 ------------------------------------------------------------ consensus_6885#2 ------------------------------------------------------------ consensus_6885#0 TTAAAAATACTTTAAGCATAATTTATATATTATATATTTTTTTCAAAACTTTTGAATAAG 761 consensus_6885#1 ---------------------------------- consensus_6885#2 ---------------------------------- consensus_6885#0 ATAATGGTTAAGCATGTGTTAAAAATTAACTATG 795 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||