cluster # 690

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Oryza sativa
cluster # 690 cluster # 690 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_690#0 length = 335 sequences # 1

consensus_690#1 length = 291 sequences # 1

consensusID : consensus_690#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACTATTCTTGGGGAACCCATATATGATGCCTGATTTGAAATCAAAGGGGGATCGACCAATCGAGAAAAAATTCGCTACAAATCTCCCCTCAGATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTATGCCTGCCGGTGGGGCATATCACAAAGGGTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATCATCAGATCATCACCCTTTCCAAAAAACGTTGGATCCCCACTTGGACTACTCCTTCAATCCATGTCAGGGGCCAAGGGCGAAT]

[+] EMBL CF311587             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACTATTCTTGGGGAACCCATATATGATGCCTGATTTGAAATCAAAGGGGGATCGACCAATCGAGAAAAAATTCGCTACAAATCTCCCCTCAGATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTATGCCTGCCGGTGGGGCATATCACAAAGGGTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATCATCAGATCATCACCCTTTCCAAAAAACGTTGGATCCCCACTTGGACTACTCCTTCAATCCATGTCAGGGGCCAAGGGCGAAT]




>consensus_690#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACTATTCTTGGGGAACC
CATATATGATGCCTGATTTGAAATCAAAGGGGGATCGACCAATCGAGAAAAAATTCGCTA
CAAATCTCCCCTCAGATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTATGCCT
GCCGGTGGGGCATATCACAAAGGGTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCG
ATCGATGATCATCATCAGATCATCACCCTTTCCAAAAAACGTTGGATCCCCACTTGGACT
ACTCCTTCAATCCATGTCAGGGGCCAAGGGCGAAT

consensusID : consensus_690#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAACCCCCAATCGAGAAAAAATTCCCTTCAAATTTCCCCTCCAATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTTTGCCTGCCGGTGGGGCATATTACAAAGGGTTTTGGGACCGGAATGTTTTTATGGGTGGCCCATCGATCGATGATCATTATTAAATCATCGCCCTTTCCAAAAAAAGTTGGATCCCCCCTTGGACTACTCCTTTAATCCCTGGCAGGGGCC]

[+] EMBL CF338084             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAACCCCCAATCGAGAAAAAATTCCCTTCAAATTTCCCCTCCAATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTTTGCCTGCCGGTGGGGCATATTACAAAGGGTTTTGGGACCGGAATGTTTTTATGGGTGGCCCATCGATCGATGATCATTATTAAATCATCGCCCTTTCCAAAAAAAGTTGGATCCCCCCTTGGACTACTCCTTTAATCCCTGGCAGGGGCC]




>consensus_690#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGA
ACCCCCAATCGAGAAAAAATTCCCTTCAAATTTCCCCTCCAATGATACCAATACCCCGGG
GGCCCCACAAGCGGTCAATTTTGCCTGCCGGTGGGGCATATTACAAAGGGTTTTGGGACC
GGAATGTTTTTATGGGTGGCCCATCGATCGATGATCATTATTAAATCATCGCCCTTTCCA
AAAAAAGTTGGATCCCCCCTTGGACTACTCCTTTAATCCCTGGCAGGGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_690#0      ---TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACTATTCTTGGGGA 57
consensus_690#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGA 60
                        ****************************************     * ** ** ****

consensus_690#0      ACCCATATATGATGCCTGATTTGAAATCAAAGGGGGATCGACCAATCGAGAAAAAATTCG 117
consensus_690#1      ACCC-------------------------------------CCAATCGAGAAAAAATTCC 83
                     ****                                     ****************** 

consensus_690#0      CTACAAATCTCCCCTCAGATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTATG 177
consensus_690#1      CTTCAAATTTCCCCTCCAATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTTTG 143
                     ** ***** *******  *************************************** **

consensus_690#0      CCTGCCGGTGGGGCATATCACAAAGGGTTTAGGGACAGGAATGTTTTCATGGGTGGCCCA 237
consensus_690#1      CCTGCCGGTGGGGCATATTACAAAGGGTTTTGGGACCGGAATGTTTTTATGGGTGGCCCA 203
                     ****************** *********** ***** ********** ************

consensus_690#0      TCGATCGATGATCATCATCAGATCATCACCCTTTCCAAAAAACGTTGGATCCCCACTTGG 297
consensus_690#1      TCGATCGATGATCATTATTAAATCATCGCCCTTTCCAAAAAAAGTTGGATCCCCCCTTGG 263
                     *************** ** * ****** ************** *********** *****

consensus_690#0      ACTACTCCTTCAATCCATGTCAGGGGCCAAGGGCGAAT 335
consensus_690#1      ACTACTCCTTTAATCCCTGGCAGGGGCC---------- 291
                     ********** ***** ** ********