These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1466 fasta sequence [CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCGTAAGCATCTCGCCGCAGTGCTCATCTCCTCCTCCTCCTCCTCCTGAGTCCTCCTGACTGATACTATACTCTAGTTATGCTTATGCGAAAGCACTGGGGGAAAGATTCTTTCAGAATTTTGTGTCAAGATGGATTAAGGGGTAAAAGGAATAACAATACACGTACTCCAACTGGGTTGGTGACTTGAGTTCATGGCAGGAGAATAAAGACTTGATTTTTGGTGCTTGTTTGATGGGAATACCGCAGATTTGCGATATCACCGTCAGCGAGTTTAATTGGGAATAAAGACGGTTTTGTATTAGCTTTGTGCTTTGAGCATACCAGTGTTTTGCATCTGAAACTTGTAAAAGCTGATAATGAGGACGAATATTTTACAGAACTTTAGATCAATCAATATGAAAAACCTGCGATTTGAAATAGAGATAGCTGGACAAGGACTTGTGATTATCTGCCATGCTTATCTTTCTGATATCCGGAAATCCTGCTGGATGCCTGGATAGACAGTACAAAGGACAATAATGTGTATTTATGCCTTGGTATCTGAATAATGAGTAGTTACTACATTAGTGTGGGAAGTATGAACTGCAGATCCAGTTCCTATGCTTACAGATATGGTGCACATGTGAATGCTCGCTGTTAAATGATTAAATTTACTTGAGGAAGACAAGGCATACTTAATTACTTATCATGTGATATGCAGATCCAAGTTGTTAGGATACAGTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTACTTAATTTCATTGTGAATGGAGGTATTTGTTCAATTTCACTTGTAGTACAAGTTACATGCTCAACTCCCTTTGTGCTTTTGAGTTTAATGTGATTTCAATCTGCAGCGAGGTGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGGTCTGGACATCTTTGCTATTTTCTGTCTTGTAATTGTTATGTTTCACCCAATTGGCCAGAGTTATATTCTTCATTCATTTTTATTCCAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTAAAGCAAGTTATCTCTAAAAGTCTGTATTGATTAGTGATTGCTATTTATCAGATTTTGTATAATTCCGTTAGCATTGCAATAATCAATAGTAC] [+] EMBL AK070960 [CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCGTAAGCATCTCGCCGCAGTGCTCATCTCCTCCTCCTCCTCCTCCTGAGTCCTCCTGACTGATACTATACTCTAGTTATGCTTATGCGAAAGCACTGGGGGAAAGATTCTTTCAGAATTTTGTGTCAAGATGGATTAAGGGGTAAAAGGAATAACAATACACGTACTCCAACTGGGTTGGTGACTTGAGTTCATGGCAGGAGAATAAAGACTTGATTTTTGGTGCTTGTTTGATGGGAATACCGCAGATTTGCGATATCACCGTCAGCGAGTTTAATTGGGAATAAAGACGGTTTTGTATTAGCTTTGTGCTTTGAGCATACCAGTGTTTTGCATCTGAAACTTGTAAAAGCTGATAATGAGGACGAATATTTTACAGAACTTTAGATCAATCAATATGAAAAACCTGCGATTTGAAATAGAGATAGCTGGACAAGGACTTGTGATTATCTGCCATGCTTATCTTTCTGATATCCGGAAATCCTGCTGGATGCCTGGATAGACAGTACAAAGGACAATAATGTGTATTTATGCCTTGGTATCTGAATAATGAGTAGTTACTACATTAGTGTGGGAAGTATGAACTGCAGATCCAGTTCCTATGCTTACAGATATGGTGCACATGTGAATGCTCGCTGTTAAATGATTAAATTTACTTGAGGAAGACAAGGCATACTTAATTACTTATCATGTGATATGCAGATCCAAGTTGTTAGGATACAGTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTACTTAATTTCATTGTGAATGGAGGTATTTGTTCAATTTCACTTGTAGTACAAGTTACATGCTCAACTCCCTTTGTGCTTTTGAGTTTAATGTGATTTCAATCTGCAGCGAGGTGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGGTCTGGACATCTTTGCTATTTTCTGTCTTGTAATTGTTATGTTTCACCCAATTGGCCAGAGTTATATTCTTCATTCATTTTTATTCCAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTAAAGCAAGTTATCTCTAAAAGTCTGTATTGATTAGTGATTGCTATTTATCAGATTTTGTATAATTCCGTTAGCATTGCAATAATCAATAGTAC] consensusID : consensus_6902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1246 fasta sequence [GAGCCGTCCATATAAATCCACGCCGTCGCCGCCGAATCTCGCGAAAAAGCTCGCAAATTTCTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACA-GTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATT-ACTTAA-TTTCATTGTGAATGGAGCGAGGCGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTTCTGCTGTGGGCGTTGTTGTGGCACAATCCAAACCCATCTATGATAGTCCTTTCGAAGTTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCTATATGGAGGGAGGCTTTTCTTCATGCTGAAGCGTTTTCCTATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACTATATGCTTCCTTTGTTTCTTGGCACGATGCATTATGATGTGCTTTGATGCATTTGACAAAAAAGCTGACCTTGATGTGCTT-GACCATCCAATTCTTAATTTCATCTATTACCTGATC-GTTGAAATTCTTCCTTCATCTCTTGTCCTGTTTATTCTGAGGAGAATCCCTTCGAAGCTACGGCTCGCCCAGTATCATCCCCTCAACAGTGGCTAGGGGATGAAAACGGATGAAAACATGAAAGCTAAAAATATGGAGAGGCCTGCAAAGTGACACGGCTGCAAGCCCAGGACATGAAAAAAAAGGATGACCCATGGTCTAAAATCTCTAACCCTTGTTCAAAATGTGTATAGATAGGGATCTGAAATCTGAAGTTTTCCCACAACCTTCACCTCCTGTAGCTAACCTTGGTGGTTCAAGGTGCTGATGATTTCGTGTAACCAATTGTTCCTTTGTAACAATGGAAGCAAGTGTCCTCGCTCTTTTGAGC] [+] EMBL AK070614 [GAGCCGTCCATATAAATCCACGCCGTCGCCGCCGAATCTCGCGAAAAAGCTCGCAAATTTCTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACA GTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATT ACTTAA TTTCATTGTGAATGGAGCGAGGCGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTTCTGCTGTGGGCGTTGTTGTGGCACAATCCAAACCCATCTATGATAGTCCTTTCGAAGTTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCTATATGGAGGGAGGCTTTTCTTCATGCTGAAGCGTTTTCCTATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACTATATGCTTCCTTTGTTTCTTGGCACGATGCATTATGATGTGCTTTGATGCATTTGACAAAAAAGCTGACCTTGATGTGCTT GACCATCCAATTCTTAATTTCATCTATTACCTGATC GTTGAAATTCTTCCTTCATCTCTTGTCCTGTTTATTCTGAGGAGAATCCCTTCGAAGCTACGGCTCGCCCAGTATCATCCCCTCAACAGTGGCTAGGGGATGAAAACGGATGAAAACATGAAAGCTAAAAATATGGAGAGGCCTGCAAAGTGACACGGCTGCAAGCCCAGGACATGAAAAAAAAGGATGACCCATGGTCTAAAATCTCTAACCCTTGTTCAAAATGTGTATAGATAGGGATCTGAAATCTGAAGTTTTCCCACAACCTTCACCTCCTGTAGCTAACCTTGGTGGTTCAAGGTGCTGATGATTTCGTGTAACCAATTGTTCCTTTGTAACAATGGAAGCAAGTGTCCTCGCTCTTTTGAGC] [-] EMBL BI809087 [ GCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACA GTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTCACTTAACTTTCATTG ] [+] EMBL CA766137 [ GGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACANGTACAGAGTTCCTGAATACGGATGGACAACACAAAAGGTCTTTCAATT ACTTAA TTTCATTGTGAATGGAGCGAGGTGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTTCTGCTGTGGGCGTTGTTGTGGCACAATCCAAACCCATCTATGATAGTCCTTTCGAAGTTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCTATATGGAGGGAGGCTTTTCTTCATGCTGAAGCGTTTTCCTATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACTATATGCTTCCTTTGNTTCTTGGCACGATGCATTATGATGTGCTTTGATGCATTTGACAAAAAAGCTGACCTTGATGTGCTTGGACCATCCAATTCTTAATTTCATCTATTACCTGATCGGTGGAAATTCTTCCNTCATCTCTTGGCCTGGTTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6902#0 ------------------------------------------------------------ consensus_6902#1 GAGCCGTCCATATAAATCCACGCCGTCGCCGCCGAATCTCGCGAAAAAGCTCGCAAATTT 60 consensus_6902#0 CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATG 60 consensus_6902#1 CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATG 120 ************************************************************ consensus_6902#0 GCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCG 120 consensus_6902#1 GCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCG 180 ************************************************************ consensus_6902#0 ACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCA 180 consensus_6902#1 ACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCA 240 ************************************************************ consensus_6902#0 TCCTCCTTCGTAAGCATCTCGCCGCAGTGCTCATCTCCTCCTCCTCCTCCTCCTGAGTCC 240 consensus_6902#1 TCCTCCTTCATC--CAAGTTGTTAGGATACA-GTACAGAGTTCCTGAATATGGATGGACA 297 ********* * ** * * * * * **** * * * consensus_6902#0 TCCTGACTGATACTATACTCTAGTTATGCTTATGCGAAAGCACTGGGGGAAAGATTCTTT 300 consensus_6902#1 ACACAAAAGGTCTTTCAATTACTTAATTTCATTGTGAATGGAGCGAGGCGTTCTATCTTT 357 * * * * * * * * ** ** *** * * * ** ***** consensus_6902#0 CAGAATTTTGTGTCAAGATGGATTAAGGGGTAAAAGGAA-TAACAATACACGTACTCCAA 359 consensus_6902#1 -GCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGT-TATTCTTG 415 * * * **** * * * ** * ** * ** ** consensus_6902#0 CTGGGTTGGTGACTTGAGTTCATGGCAGGAGAATAAAGACTTGATTTTTGGTGCTTGTTT 419 consensus_6902#1 ATCTTCCGG-GGCTTGCATTCTTCACAACGTA--------TGCAATGTTGGCACTTTTCT 466 * ** * **** *** * ** * * * * **** *** * * consensus_6902#0 GATGGGAATACCGCAGATTTGCGATATCACCGTCAGCGAGTTTAATTGGGAATAAAGACG 479 consensus_6902#1 ---------------GGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAG--- 508 * ** ****** *** ** * * ** * *** consensus_6902#0 GTTTTGTATTAGCTTTGTGCTTTGAGCATACCAGTGTTTTGCATCTGAAACTTGTAAAAG 539 consensus_6902#1 GGCTTAGATCAGGTTTCTACACTAT---TAATGGTGTAATATATGTGATAC-------AG 558 * ** ** ** *** * * * ** **** * ** *** ** ** consensus_6902#0 CTGATAATGAGGACGAATATTTTACAGAACTTTAGATCAATCAATATGAAAAACCTGCGA 599 consensus_6902#1 GTTCTGCTGTGGGCGT-TGTTGTGGCACAATCCAAACCCATC--TATGATAGTCCT---- 611 * * ** ** ** * ** * * * * * * *** ***** * *** consensus_6902#0 TTTGAAATAGAGATAGCTGGACAAGGACTTGTGATTATCTGCCATGCTTATCTTTCTGAT 659 consensus_6902#1 TTCGAAG------TTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCT 665 ** *** * * * * * * * ** ***** * ****** * consensus_6902#0 ATCCGGAAATCCTGCTGGATGCCTGGATAGACAGTACAAAGGACAATAATGTGTATTTAT 719 consensus_6902#1 ATATGGAG--------GGAGGCTTTTCTTCATGCTGAA------------GCGTTTTCCT 705 ** *** *** ** * * * * * * ** ** * consensus_6902#0 GCCTTGGTATCTGAATAATGAGTAGTTACTACATTAGTGTGGGAAGTATGAACTGCAGAT 779 consensus_6902#1 ATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACT----AT 761 * * * * * *** ** *** *** ** consensus_6902#0 CCAGTTCCTATGCTTACAGATATGGTGCACATGTGAATGCTCGCTGTTAAATGATTAAAT 839 consensus_6902#1 ATGCTTCCTTTGTTTCTTGGCACGATGCAT--------------TATGATGTGCTTTGAT 807 ***** ** ** * * * **** * * * ** ** ** consensus_6902#0 TTACTTGAGGAAGACAAGGCATACTTAAT-TACTTATCATGTGATATGCAGATCCAAGTT 898 consensus_6902#1 GCATTTGACAAAAA--AGCTGACCTTGATGTGCTTGAC------CATCCAATTCTTAATT 859 * **** ** * ** *** ** * *** * ** ** ** * ** consensus_6902#0 GTTAGGATACAGTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTA 958 consensus_6902#1 TC----ATCTATTACCTGATCGTTGAAATTCTTCCTTCATCTCTTGTCCTGTTTATTCTG 915 ** * *** * **** * ** * * * *** * consensus_6902#0 CTTAATTTCATTGTGAATGGAGGTATTTGTTCAATTTCA--CTTGTAGTACAAGTTACAT 1016 consensus_6902#1 AGGAGAATCCCTTCGAAGCTACG-GCTCGCCCAGTATCATCCCCTCAACAGTGGCTAGGG 974 * ** * *** * * * * ** * *** * * * * ** consensus_6902#0 GCTCAACTCCCTTTGTGCTTTTGAGTTTAATGTGATTTCAATCTGCAGCGAGGTGTTCTA 1076 consensus_6902#1 GATGAAAACGGATGAAAACATGAAAGCTAAAAATATGGAGAGGC-CTGCAAAGTGAC--A 1031 * * ** * * * * *** ** * * ** * *** * consensus_6902#0 TCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGGTCTGGACATCTTTGCTAT 1136 consensus_6902#1 CGGCTGCAAGCCCAGGACATGAAAAAAAAGGATGACCCATGGTCTAAAATCTCTAACCCT 1091 **** ** * ** * ** *** ** ***** * * * * consensus_6902#0 TTTCTGTCTTGTA-ATTGTTATGTTTC----ACCCAATTGGCCAGAGTTATATTCTTCAT 1191 consensus_6902#1 TGTTCAAAATGTGTATAGATAGGGATCTGAAATCTGAAGTTTTCCCACAACCTTCACCTC 1151 * * *** ** * ** * ** * * * * *** * consensus_6902#0 TCATTTTTATTCCAGATCTTTCAGCATGTTATT--CTTGATCTTCCGGGGCTTGCATTCT 1249 consensus_6902#1 CTGTAGCTAACCTTGGTGGTTCAAGGTGCTGATGATTTCGTGTAACCAATTGTTCCTTTG 1211 * ** * * * **** ** * * ** * * * * * ** consensus_6902#0 TCACAACGTATGCAA-TGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGT 1308 consensus_6902#1 TAACAATGGAAGCAAGTGTCCTCGCTCTTTTGAGC------------------------- 1246 * **** * * **** *** * ** ** ** ** consensus_6902#0 CTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATA 1368 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 CAGGTAAAGCAAGTTATCTCTAAAAGTCTGTATTGATTAGTGATTGCTATTTATCAGATT 1428 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 TTGTATAATTCCGTTAGCATTGCAATAATCAATAGTAC 1466 consensus_6902#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||