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Oryza sativa
cluster # 6905 cluster # 6905       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6905#0 length = 1645 sequences # 4  

consensusID : consensus_6905#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1645
fasta sequence
                              [CCCCCATCCCCACCCCACCCGCTTCACTCTCCCCATCGACCAAACCGCCACCGCCACCGCCACCATGCTCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGTCGTGCTCACCACCACCAGCGGCCGCGCGCCCCTCCTCCACCTCCCCAGGACGCCACGCCCTACTACCGCCGCAAGGATCGCCGCCGCGCCCGACTCCTCCAGAGCCAGAGCCGGTGGCGCGCCTCTCCTCCTCGGCTCCGCCGTTCCCCGGCGGCGTGGCTGGGCGCTGGTATGCCGGGACTCCTCCCTCCCTGGCCCACCTGGAGTGGACCCCGTGGCGGAGGAGGAAGAGAACAGGAAGAAGACCGAGGCGGTGGCGGCCGCCGCGGCGGCCCGGATTGCCAGTAGCGGCGGCGGCGGCGGAGGAGGAGGAGGGAGTCTCAGCGACTGGACGACGTCGGTGCTTATCTTCGGAATCTGGGCGGGGCTCATGTACTACATCTTCCAACTCGCGCCCAACCAGACGCCGTACAGAGACACATACTTCTTGCAAAAGCTTTGTAACCTGAAAGGCGACGATGGCTTCCGAATGAATGATGTTCTTGTGCCTCTATGGTACATAATGGGCCTCTGGCCACTAGTGTACAGCATGCTGCTTCTTCCTACTGGCAGAAGTTCAAAAAGCAAGATTCCTGTCTGGCCATTCCTAATTCTTTCATGCATTGGGGGAGCATATGCCCTGATTCCCTACTTTGTTCTATGGAAGCCTCCTCCACCTCCGATTGATGA-GGAA-GAAATTGGACAAT-GGCCACTGAAGTTTCTTGAGTCAAAATTGACTGCAGGAGTAACGTTTGCTGTGGGCCTTGGGCTGATTGTCTATGCAGCCAAAGCTGGTGGTGAAGATTGGCAGGAATTCATTCGATACTTTCGGGAAAGCAAGTTGATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGGAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACCTTCATTGTATCTTTTGCTGAGGCCATCACTCTCTTCTCTGCTAGCAGCAACAGGTCCATCAGATGAT-AAAACACAGTAATAACAATTATGAAGCTGAGTATT-GATGAGGTTTTGGTTACGAGGAGATGACATGGTAGAAAGGTTAAGAACCACTTATGGAAATTGGATTGGACAGATTTAGATGCCAATCTGGGGCATTCCACAAAGTTGACTTGTTAGTAATGCATTTGAATGGCAAAAGTATGAATAATGTCCTTACTCAGCATGGTCAGCATCTGAATTCGTCAGAAAATTTTCAACTTGGAAGGCATTGGAGTAATCAGCAATGCTTAAATCCCTGGTGAACATTCTGCATTCTCCCCAGCGTACATATACAACTGGTAGGACCTTTTGCTACTGTTGTCCATGTATAGAAAATTTTGACCTTGTGACAGTGGTCCATATGTAAGAAGCCATGGTGCTAGTACATGATCATGAATGATAGGCTACAAATTTATTGTTACAGCCAAAGAATAACAGGATTCTTTTGGCACCAACTACACTTAGAATTACATTGCAACAGGTGTTTACTGCTCAAAAAAAAAAA]

[+] EMBL AK065348             [CCCCCATCCCCACCCCACCCGCTTCACTCTCCCCATCGACCAAACCGCCACCGCCACCGCCACCATGCTCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGTCGTGCTCACCACCACCAGCGGCCGCGCGCCCCTCCTCCACCTCCCCAGGACGCCACGCCCTACTACCGCCGCAAGGATCGCCGCCGCGCCCGACTCCTCCAGAGCCAGAGCCGGTGGCGCGCCTCTCCTCCTCGGCTCCGCCGTTCCCCGGCGGCGTGGCTGGGCGCTGGTATGCCGGGACTCCTCCCTCCCTGGCCCACCTGGAGTGGACCCCGTGGCGGAGGAGGAAGAGAACAGGAAGAAGACCGAGGCGGTGGCGGCCGCCGCGGCGGCCCGGATTGCCAGTAGCGGCGGCGGCGGCGGAGGAGGAGGAGGGAGTCTCAGCGACTGGACGACGTCGGTGCTTATCTTCGGAATCTGGGCGGGGCTCATGTACTACATCTTCCAACTCGCGCCCAACCAGACGCCGTACAGAGACACATACTTCTTGCAAAAGCTTTGTAACCTGAAAGGCGACGATGGCTTCCGAATGAATGATGTTCTTGTGCCTCTATGGTACATAATGGGCCTCTGGCCACTAGTGTACAGCATGCTGCTTCTTCCTACTGGCAGAAGTTCAAAAAGCAAGATTCCTGTCTGGCCATTCCTAATTCTTTCATGCATTGGGGGAGCATATGCCCTGATTCCCTACTTTGTTCTATGGAAGCCTCCTCCACCTCCGATTGATGA GGAA GAAATTGGACAAT GGCCACTGAAGTTTCTTGAGTCAAAATTGACTGCAGGAGTAACGTTTGCTGTGGGCCTTGGGCTGATTGTCTATGCAGCCAAAGCTGGTGGTGAAGATTGGCAGGAATTCATTCGATACTTTCGGGAAAGCAAGTTGATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTTTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGGAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACCTTCATTGTATCTTTTGCTGAGGCCATCACTCTCTTCTCTGCTAGCAGCAACAGGTCCATCAGATGAT AAAACACAGTAATAACAATTATGAAGCTGAGTATT GATGAGGTTTTGGTTACGAGGAGATGACATGGTAGAAAGGTTAAGAACCACTTATGGAAATTGGATTGGACAGATTTAGATGCCAATCTGGGGCATTCCACAAAGTTGACTTGTTAGTAATGCATTTGAATGGCAAAAGTATGAATAATGTCCTTACTCAGCATGGTCAGCATCTGAATTCGTCAGAAAATTTTCAACTTGGAAGGCATTGGAGTAATCAGCAATGCTTAAATCCCTGGTGAACATTCTGCATTCTCCCCAGCGTACATATACAACTGGTAGGACCTTTTGCTACTGTTGTCCATGTATAGAAAATTTTGACCTTGTGACAGTGGTCCATATGTAAGAAGCCATGGTGCTAGTACATGATCATGAATGATAGGCTACAAATTTATTGTTACAGCCAAAGAATAACAGGATTCTTTTGGCACCAACTACACTTAGAATTACATTGCAACAGGTGT                    ]
[+] EMBL CA767319             [                                                                                                                                                                                                                                                                                                                                                                                                                             GAGGGAGTCTCAGCGACTGGACGACGTCGGTGCTTATCTTCGGAATCTGGGCGGGGCTCATGTACTACATCTTCCAACTCGCGCCCAACCAGACGCCGTACAGAGACACATACTTCTTGCAAAAGCTTTGTAATCTGAAAGGCGACGATGGCTTCCGAATGAATGATGTTCTTGTGCCTCTATGGTACATAATGGGCCTCTGGCCACTAGTGTACAGCATGCTGCTTCTTCCTACTGGCAGAAGTTCAAAAAGCAAGATTCCTGTCTGGCCATTCCTAATTCTTTCATGCATTGGGGGAGCATATGCCCTGATTCCCTACTTTGTTCTATGGAAGCCTCCTCCACCTCCGATTGATGA GGAA GAAATTGGACAAT GGCCACTGAAGTTTCTTGAGTCAAAATTGACTGCAGGAGTAACGTTTGCTGTGGGCCTTGGGCTGATTGTCTATGCAGCCAAAGCTGGTGGTGAAGATTGGCAGGAATTCATTCGATACTTTCGGGAAAGCAAGTTGATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGGAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACCTTCATTGTATCTTTTGCTGAGGCCATCACTCTCTTCTCTGCTAGCAGCAACAGGTCCATCAGATGATAAAAACACAGTAATAACAATTATGAAGCTGAGTATTGGATGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS13784A            [                                                                                                                                                                                                                                                                                                                                                                                                                                  AGTCTCAGCGACTGGACGACGTCGGTGCTTATCTTCGGAATCTGGGCGGGGCTCATGTACTACATCTTCCAACTCGCGCCCAACCAGACGCCGTACAGAGACACATACTTCTTGCAAAAGCTTTGTAACCTGAAAGGCGACGATGGCTTCCGAATGAATGATGTTCTTGTGCCTCTATGGTACATAATGGGCCTCTGG CACTAGTGTACAGCATGCTGCTTCTTCCTACTGGCAGAAGTTCAAAAAGCAAGATTCCTGTCTGGCCATTCCTAATTCTTTCATGCATTGGGGGAGCATATGCCCTGATTNCCTACTTTGNTCTATGGAAGGCTCCTNCACCTCCGATTGATGAGGGAAGGAATTTGGNCAATGGGCCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU032711             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTNGACAGCAAGGCGATGGAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGNCCTTCATTGTATCTTTTGCTGAGGCCATCACTCTCTTCTCTGCTNGCAGCAACAGGTCCATCAGATGAT AAAACACAGTAATTACAATTATGAAGCTGAGTATT GATGAGGTTTTGGTTACGAGGAGATGACATGGTAGAAAGGTTAAGAACCACTTATGGAAATTGGATTGGACAGATTTAGATGCCAATCTGGAGCATTCCACAAAGTTGACTTGTTAGTAATGCATTTGAATGGCAAAAGTATGAATAATGTCCTTACTCAGCATGGTCAGCATCTGAATTCGTCAGAAAATTTTCAACTTGGAAGGCATTGGAGTAATCAGCAATGCTTAAATCCCTGGTGAACATTCTGCATTCTCCCCAGCGTACATATACAACTGGTAGGACCTTTTGCTACTGTTGTCCATGTATAGAAAATTTTGACCTTGTGACAGTGGTCCATATGTAAGAAGCCATGGTGCTAGTACATGATCATGAATGATAGGCTACAAATTTATTGTTACAGCCAAAGAATAACAGGATTCTTTTGGCACCAACTACACTTAGAATTACATTGCAACAGGTGTTTACTGCTCAAAAAAAAAAA]


>consensus_6905#0 CCCCCATCCCCACCCCACCCGCTTCACTCTCCCCATCGACCAAACCGCCACCGCCACCGC CACCATGCTCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGTCGTGCTCACCACCACCAG CGGCCGCGCGCCCCTCCTCCACCTCCCCAGGACGCCACGCCCTACTACCGCCGCAAGGAT CGCCGCCGCGCCCGACTCCTCCAGAGCCAGAGCCGGTGGCGCGCCTCTCCTCCTCGGCTC CGCCGTTCCCCGGCGGCGTGGCTGGGCGCTGGTATGCCGGGACTCCTCCCTCCCTGGCCC ACCTGGAGTGGACCCCGTGGCGGAGGAGGAAGAGAACAGGAAGAAGACCGAGGCGGTGGC GGCCGCCGCGGCGGCCCGGATTGCCAGTAGCGGCGGCGGCGGCGGAGGAGGAGGAGGGAG TCTCAGCGACTGGACGACGTCGGTGCTTATCTTCGGAATCTGGGCGGGGCTCATGTACTA CATCTTCCAACTCGCGCCCAACCAGACGCCGTACAGAGACACATACTTCTTGCAAAAGCT TTGTAACCTGAAAGGCGACGATGGCTTCCGAATGAATGATGTTCTTGTGCCTCTATGGTA CATAATGGGCCTCTGGCCACTAGTGTACAGCATGCTGCTTCTTCCTACTGGCAGAAGTTC AAAAAGCAAGATTCCTGTCTGGCCATTCCTAATTCTTTCATGCATTGGGGGAGCATATGC CCTGATTCCCTACTTTGTTCTATGGAAGCCTCCTCCACCTCCGATTGATGAGGAAGAAAT TGGACAATGGCCACTGAAGTTTCTTGAGTCAAAATTGACTGCAGGAGTAACGTTTGCTGT GGGCCTTGGGCTGATTGTCTATGCAGCCAAAGCTGGTGGTGAAGATTGGCAGGAATTCAT TCGATACTTTCGGGAAAGCAAGTTGATACATATCACCTGCCTTGATTTCTGTTTGCTCTC GGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGGAAAAATGGCTC TTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACCTTCATTGTATCTTTTGCTGAG GCCATCACTCTCTTCTCTGCTAGCAGCAACAGGTCCATCAGATGATAAAACACAGTAATA ACAATTATGAAGCTGAGTATTGATGAGGTTTTGGTTACGAGGAGATGACATGGTAGAAAG GTTAAGAACCACTTATGGAAATTGGATTGGACAGATTTAGATGCCAATCTGGGGCATTCC ACAAAGTTGACTTGTTAGTAATGCATTTGAATGGCAAAAGTATGAATAATGTCCTTACTC AGCATGGTCAGCATCTGAATTCGTCAGAAAATTTTCAACTTGGAAGGCATTGGAGTAATC AGCAATGCTTAAATCCCTGGTGAACATTCTGCATTCTCCCCAGCGTACATATACAACTGG TAGGACCTTTTGCTACTGTTGTCCATGTATAGAAAATTTTGACCTTGTGACAGTGGTCCA TATGTAAGAAGCCATGGTGCTAGTACATGATCATGAATGATAGGCTACAAATTTATTGTT ACAGCCAAAGAATAACAGGATTCTTTTGGCACCAACTACACTTAGAATTACATTGCAACA GGTGTTTACTGCTCAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)