These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1622 fasta sequence [CTCCTCCCATGGCGGCGCGCCACCGCCGCCGGTGAGGCCATCGCCCGCCGCCTCAACCACCACCGAGCCCCGCCCTTCTCCGATCCCGACGACGACCCGCCGTTCACGCGGCTCGCGGAGCGCCCGCCTCGAGCTCCCTCGAAGAAGAAGAAGAAGGAGGAGGAGGACCAGGGCGGCAGGATCAGGCCGCCGGAGCCGGCGAGCTCCGACCTGCCGTTCGACTTCCGGTACTCCTACTCGGAGACGGACCCGGCGTGGAGGCCCATCGGGTTCCGGGAGCCCACCCGGTTCTCGCCGTTCGGGCCCGGCCGGCTCGACCGGCCATGGGACGGCGTCGCCGCGGCGGCGGCGCGCGGGGAGGGTGCGGGTGCGGCGGCGACGAGCAGGGAGGAGGTTCTTGGCGAGCCGCTGGCGGAGGAGGAGGTGGCGCAGCTCGTGGAGAGGTACCGGCACAGCGACTGCTCCCGGCAGATCAATTTGGGCAAAGGCGGAGTGACACACAATATGATTGATGACATCCACAATCACTGGAGACGTGCAGAAGCTGTTAGGATCAAATGCCTGGGAGTGCCAACTCTTGACATGGACAATATATGCTTCCATCTTGAGGATAAAACAGGTGGGAAAGTAATCTACCGTAACATAAACATCCTTATCCTATACCGTGGTCGGAATTATGATCCGAAACAGCGGCCTCAAATACCACTAATGTTGTGGAAGCCACTTGCTCCTATTTACCCTAGGCTTGTGCAAAATGTTGCTGATGGTTTGACTTTCGAGAAAACTAAAGAATTGAGGAATACGGGATTAAATTCTTCACCTCTTATGAAATTAACTAGGAATGGTGTTTATGTCAATGTTGTTGATAGAGTGAGAGAGGCCTTCAAGACTGTGGAAGTTGTGAGGTTAGATTGCTCTCATGTTGGTAGCAGTGATTGCAAGAAAATCGGTGTGAAGCTAAGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGAGGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATATCAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAGTTCCATGGGATGTCATGTGATCAGAACAAATTGCTGAAAACCTATTACGGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGCTATCTGGAATTTGGAGTTGTCTGAAAGAGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACAGTACAGACGCACATTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK107337 [CTCCTCCCATGGCGGCGCGCCACCGCCGCCGGTGAGGCCATCGCCCGCCGCCTCAACCACCACCGAGCCCCGCCCTTCTCCGATCCCGACGACGACCCGCCGTTCACGCGGCTCGCGGAGCGCCCGCCTCGAGCTCCCTCGAAGAAGAAGAAGAAGGAGGAGGAGGACCAGGGCGGCAGGATCAGGCCGCCGGAGCCGGCGAGCTCCGACCTGCCGTTCGACTTCCGGTACTCCTACTCGGAGACGGACCCGGCGTGGAGGCCCATCGGGTTCCGGGAGCCCACCCGGTTCTCGCCGTTCGGGCCCGGCCGGCTCGACCGGCCATGGGACGGCGTCGCCGCGGCGGCGGCGCGCGGGGAGGGTGCGGGTGCGGCGGCGACGAGCAGGGAGGAGGTTCTTGGCGAGCCGCTGGCGGAGGAGGAGGTGGCGCAGCTCGTGGAGAGGTACCGGCACAGCGACTGCTCCCGGCAGATCAATTTGGGCAAAGGCGGAGTGACACACAATATGATTGATGACATCCACAATCACTGGAGACGTGCAGAAGCTGTTAGGATCAAATGCCTGGGAGTGCCAACTCTTGACATGGACAATATATGCTTCCATCTTGAGGATAAAACAGGTGGGAAAGTAATCTACCGTAACATAAACATCCTTATCCTATACCGTGGTCGGAATTATGATCCGAAACAGCGGCCTCAAATACCACTAATGTTGTGGAAGCCACTTGCTCCTATTTACCCTAGGCTTGTGCAAAATGTTGCTGATGGTTTGACTTTCGAGAAAACTAAAGAATTGAGGAATACGGGATTAAATTCTTCACCTCTTATGAAATTAACTAGGAATGGTGTTTATGTCAATGTTGTTGATAGAGTGAGAGAGGCCTTCAAGACTGTGGAAGTTGTGAGGTTAGATTGCTCTCATGTTGGTAGCAGTGATTGCAAGAAAATCGGTGTGAAGCTAAGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGAGGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATATCAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAGTTCCATGGGATGTCATGTGATCAGAACAAATTGCTGAAAACCTATTACGGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGCTATCTGGAATTTGGAGTTGTCTGAAAGAGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACAGTACAGACGCACTTTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTT ] [-] EMBL CA762445 [ AAGAAAATCGGTGTGAAGCTAAGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGAGGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATATCAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAGTTCCATGGGATGTCATGTGATCAGAACAAATTGTTGAAAACCTATTACGGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGCTATCTGGAATCTGGAGTTGTTTGAAAGAGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACAGTACAGACGCCCATTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTTTGCTATCCGAGCAGATATCAACCATTTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTTAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU033031 [ ATGAAGACCCTGCTCTATTTGANTGCTGAGCATTGAACAGTACAGACGCACATTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAA ] consensusID : consensus_6906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [TGGTGAAACCTATACGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGAGTATGACAGTTTCCTCAGCGTATCTGGAATTTGGAGTTGTCTGAAAGAGGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACACGTACAGACGCACACTTGAATCATTTGTTCACACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGCAGATATCCACCATCTAGATTAGGACATAGTATCAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGCCTTTTGAATTAGAAGGCGATCATTCAGACCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTATCCTGTTGATTCCTTGATGTGCACCAAGTCAAAAGGTGCTCCCTCCGGTCAAAAAAATTTAACGTTGAGAATAAGATGTGATCAATTTCTAAAAAAAAA] [+] EMBL BI807735 [TGGTGAAACCTATACGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGAGTATGACAGTTTCCTCAGCGTATCTGGAATTTGGAGTTGTCTGAAAGAGGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACACGTACAGACGCACACTTGAATCATTTGTTCACACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGCAGATATCCACCATCTAGATTAGGACATAGTATCAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGCCTTTTGAATTAGAAGGCGATCATTCAGACCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTATCCTGTTGATTCCTTGATGTGCACCAAGTCAAAAGGTGCTCCCTCCGGTCAAAAAAATTTAACGTTGAGAATAAGATGTGATCAATTTCTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6906#0 CTCCTCCCATGGCGGCGCGCCACCGCCGCCGGTGAGGCCATCGCCCGCCGCCTCAACCAC 60 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 CACCGAGCCCCGCCCTTCTCCGATCCCGACGACGACCCGCCGTTCACGCGGCTCGCGGAG 120 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 CGCCCGCCTCGAGCTCCCTCGAAGAAGAAGAAGAAGGAGGAGGAGGACCAGGGCGGCAGG 180 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 ATCAGGCCGCCGGAGCCGGCGAGCTCCGACCTGCCGTTCGACTTCCGGTACTCCTACTCG 240 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GAGACGGACCCGGCGTGGAGGCCCATCGGGTTCCGGGAGCCCACCCGGTTCTCGCCGTTC 300 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GGGCCCGGCCGGCTCGACCGGCCATGGGACGGCGTCGCCGCGGCGGCGGCGCGCGGGGAG 360 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GGTGCGGGTGCGGCGGCGACGAGCAGGGAGGAGGTTCTTGGCGAGCCGCTGGCGGAGGAG 420 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GAGGTGGCGCAGCTCGTGGAGAGGTACCGGCACAGCGACTGCTCCCGGCAGATCAATTTG 480 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GGCAAAGGCGGAGTGACACACAATATGATTGATGACATCCACAATCACTGGAGACGTGCA 540 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GAAGCTGTTAGGATCAAATGCCTGGGAGTGCCAACTCTTGACATGGACAATATATGCTTC 600 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 CATCTTGAGGATAAAACAGGTGGGAAAGTAATCTACCGTAACATAAACATCCTTATCCTA 660 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 TACCGTGGTCGGAATTATGATCCGAAACAGCGGCCTCAAATACCACTAATGTTGTGGAAG 720 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 CCACTTGCTCCTATTTACCCTAGGCTTGTGCAAAATGTTGCTGATGGTTTGACTTTCGAG 780 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 AAAACTAAAGAATTGAGGAATACGGGATTAAATTCTTCACCTCTTATGAAATTAACTAGG 840 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 AATGGTGTTTATGTCAATGTTGTTGATAGAGTGAGAGAGGCCTTCAAGACTGTGGAAGTT 900 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GTGAGGTTAGATTGCTCTCATGTTGGTAGCAGTGATTGCAAGAAAATCGGTGTGAAGCTA 960 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 AGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGA 1020 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 GGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATAT 1080 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 CAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAG 1140 consensus_6906#1 ------------------------------------------------------------ consensus_6906#0 TTCCATGGGATGTCATGTGATCAGAACAAATTGCTGAAAACCTATTACGGGGTTACCAGA 1200 consensus_6906#1 -------------------------------TGGTGAAA-CCTAT-ACGGG-TTACCAGA 26 ** ***** ***** ***** ******** consensus_6906#0 AACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGC-TATCTGGAATTTGGAG 1259 consensus_6906#1 AACATTAGAAACCGCGCCGGTTGAGTATGACAGTTTCCTCAGCGTATCTGGAATTTGGAG 86 ************************ *** *** ** * **** **************** consensus_6906#0 TTGTCTGAAAGAG-TTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTG 1318 consensus_6906#1 TTGTCTGAAAGAGGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTG 146 ************* ********************************************** consensus_6906#0 AGCATTGAACA-GTACAGACGCACA-TTGAATCATTTTTTCAC--CTTGGAATGAGTACT 1374 consensus_6906#1 AGCATTGAACACGTACAGACGCACACTTGAATCATTTGTTCACACCTTGGAATGAGTACT 206 *********** ************* *********** ***** *************** consensus_6906#0 GTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACAT 1434 consensus_6906#1 GTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACAT 266 ************************************************************ consensus_6906#0 GTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCA 1494 consensus_6906#1 GTTCCTGCTGCTTCTGCTATCCGG-CAGATATCCACCATCTAGATTAGGACATAGTATCA 325 ************************ ******** ************************** consensus_6906#0 AAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGA 1554 consensus_6906#1 AA-GTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAG-CCTTTTGAATTAGA 383 ** ****************************************** ************** consensus_6906#0 AGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAAAAAA 1614 consensus_6906#1 AGGCGATCATTCAGA-CCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTATCCTGTTGATT 442 *************** ********************************* * consensus_6906#0 AAAAAAAA---------------------------------------------------- 1622 consensus_6906#1 CCTTGATGTGCACCAAGTCAAAAGGTGCTCCCTCCGGTCAAAAAAATTTAACGTTGAGAA 502 * consensus_6906#0 ---------------------------- consensus_6906#1 TAAGATGTGATCAATTTCTAAAAAAAAA 530 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||