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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1504 fasta sequence
[GGGGCTATGACAATGGAAATTACGTGCCATGGACACCAGATGCGGATTGGAACAAGATATACCAGATAACCAGAATGAAACACAACGGACACCATCAGAATGGATGGAGGAAACATTAATCAATATGTTCTTGTCGGGCTATTCTAATGCAGAGGTCAATGCTGATATTTCACTTGGAGACTCACAAATAAATGACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGATGAATTGCAAAATGAGAATTCGACAGCCGTGCATGAATCTCTGAGTGAAGAGGAAGAGAAATGGCTTGCTCAGTATGGTCAGGTAGAGCAAGAAATTGATGATCAACCATTATTTCCAAGCATCGATCTCTGGGATTGGGATATGGTCAAAGAATCAGTTAGTAAAGGTCAACCCATGGCCAGGCTTGTGGGACGTTTAGTTAAGGGTTCTAGTAAGCCTCATCCTTCTCTGCCTGCTCGTGGTGGCCTTCTAAGAACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGGAAAAATATAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTCCATCATCATATGACTCGTCCAACCCAACAAAAGACTGGGGGTTTTCCCAACATATATGCCAATTCTGACAATGATTTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCATGGGATGTATTTTCTATGAAAGGGNGNTTCAGCTTGCTAGTGCCAAGGAGCACAAGATAAATGCTTATAGGGACAGAGCTGCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGCAGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCATCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAACATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATACAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTTTGTAATCGCTGAACTTTGGTGATTTCAGGTATGAATTCTTCTACAAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTAGACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATAGTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTAGGCCCCTTTT]
[+] EMBL CA766815 [GGGGCTATGACAATGGAAATTACGTGCCATGGACACCAGATGCGGATTGGAACAAGATATACCAGATAACCAGAATGAAACACAACGGACACCATCAGAATGGATGGAGGAAACATTAATCAATATGTTCTTGTCGGGCTATTCTAATGCAGAGGTCAATGCTGATATTTCACTTGGAGACTCACAAATAAATGACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGATGAATTGCAAAATGAGAATTCGACAGCCGTGCATGAATCTCTGAGTGAAGAGGAAGAGAAATGGCTTGCTCAGTATGGTCAGGTAGAGCAAGAAATTGATGATCAACCATTATTTCCAAGCATCGATCTCTGGGATTGGGATATGGTCAAAGAATCAGTTAGTAAAGGTCAACCCATGGCCAGGCTTGTGGGACGTTTAGTTAAGGGTTCTAGTAAGCCTCATCCTTCTCTGCCTGCTCGTGGTGGCCTTCTAAGAACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGGAAAAATATAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTCCATCATCATATGACTCGTCCAACCCAACAAAAGACTGGGGGTTTTCCCAACATATATGCCAATTCTGACAATGATTTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCATGGGATGTATTTTCTATGAAAGGGNGNTTCAGCTTGCTAGT ]
[-] EMBL CB623276 [ CAATTCTGACAATGATTTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCAT GGATGTATTTTCTATG AAGGGTGTTTCAGC TGCTAGTGCCAAGGAGCACAAGATAAATGCTTATAGGGACAGAGCTGCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGCAGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCATCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAACATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATACAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTTTGTAATCGCTGAACTTTGGTGATTTCAGGTATGAATTCTTCTACAAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTAGACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATAGTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTAGGCCCCTTTT]
[-] EMBL CB623277 [ TTATAGGGACAGAGCTGCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGCAGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCATCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAACATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATACAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTTTGTAATCGCTGAACTTTGGTGATTTCAGGTATGAATTCTTCTACAAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTAGACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAATTGCGGAAATCTGGTATCTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAATTTAAGGTCGTGCGTTGCATGTATNAAT ]
consensusID : consensus_6907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[TTTTTGGGGTGGAACAACCCGCCTAAGATGTTTGTAATCGCTGAACTTTGGTTGATTTCAGGTATGAATTCTTCTACACAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACACGGCAGTAAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTTTTCCCCTTTTGAGACTCTAATTCACAAGCTCCGTTAATGTTGGAACCTATTTGACACATGCTCATCCTTTATTATATGGTGCAGTCTATGGATCCTTTCTAAAGAAAGTGAATACCGAATGGATTTTCTCTGAACAAAAATCATAAATGTACTCCGATTAAAAAAAAA]
[+] EMBL BI808778 [TTTTTGGGGTGGAACAACCCGCCTAAGATGTTTGTAATCGCTGAACTTTGGTTGATTTCAGGTATGAATTCTTCTACACAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACACGGCAGTAAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTTTTCCCCTTTTGAGACTCTAATTCACAAGCTCCGTTAATGTTGGAACCTATTTGACACATGCTCATCCTTTATTATATGGTGCAGTCTATGGATCCTTTCTAAAGAAAGTGAATACCGAATGGATTTTCTCTGAACAAAAATCATAAATGTACTCCGATTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6907#0 GGGGCTATGACAATGGAAATTACGTGCCATGGACACCAGATGCGGATTGGAACAAGATAT 60
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 ACCAGATAACCAGAATGAAACACAACGGACACCATCAGAATGGATGGAGGAAACATTAAT 120
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 CAATATGTTCTTGTCGGGCTATTCTAATGCAGAGGTCAATGCTGATATTTCACTTGGAGA 180
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 CTCACAAATAAATGACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGC 240
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 CTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGATGAATT 300
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 GCAAAATGAGAATTCGACAGCCGTGCATGAATCTCTGAGTGAAGAGGAAGAGAAATGGCT 360
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 TGCTCAGTATGGTCAGGTAGAGCAAGAAATTGATGATCAACCATTATTTCCAAGCATCGA 420
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 TCTCTGGGATTGGGATATGGTCAAAGAATCAGTTAGTAAAGGTCAACCCATGGCCAGGCT 480
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 TGTGGGACGTTTAGTTAAGGGTTCTAGTAAGCCTCATCCTTCTCTGCCTGCTCGTGGTGG 540
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 CCTTCTAAGAACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGG 600
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 AAAAATATAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTCCATCATCATATGACT 660
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 CGTCCAACCCAACAAAAGACTGGGGGTTTTCCCAACATATATGCCAATTCTGACAATGAT 720
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 TTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCATGGGATGTATTTTCTATGAA 780
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 AGGGNGNTTCAGCTTGCTAGTGCCAAGGAGCACAAGATAAATGCTTATAGGGACAGAGCT 840
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 GCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGC 900
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 AGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCA 960
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 TCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAAC 1020
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 ATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATA 1080
consensus_6907#1 ------------------------------------------------------------
consensus_6907#0 CAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTT 1140
consensus_6907#1 ---------------------------TTTTTGGGGTGGAA-CAACCCGCCTAAGATGTT 32
************ *** ** **********
consensus_6907#0 TGTAATCGCTGAACTTTGGT-GATTTCAGGTATGAATTCTTCTACA-AAAGAAATGATGT 1198
consensus_6907#1 TGTAATCGCTGAACTTTGGTTGATTTCAGGTATGAATTCTTCTACACAAAGAAATGATGT 92
******************** ************************* *************
consensus_6907#0 AACTGAGACTGTTCATCTCAGAAATTCG-CACCCTTCTTGGAGGACGCTGTGTTTAGTAC 1257
consensus_6907#1 AACTGAGACTGTTCATCTCAGAAATTCGGCACCCTTCTTGGAGGACGCTGTGTTTAGTAC 152
**************************** *******************************
consensus_6907#0 TACA-GGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTA 1316
consensus_6907#1 TACACGGCAGTAAAG-----GAACCTGCGGAAT-TGCGGAAATCTGGTA-----ACTGAA 201
**** ********** *** **** ** * ** * ** * **** *** *
consensus_6907#0 GACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAAT 1376
consensus_6907#1 GAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTT-TCTGTTCACC 260
** * ****** *** * * * * *** ** *** *
consensus_6907#0 TGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATAGTCCTGACGG---AAGT 1433
consensus_6907#1 CTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTTTTCCCCTTTTGAGACTCTAATT 320
** * *** ** * * ** * * *** ** *
consensus_6907#0 AATTGACTTAGTTTCTGTTC--ACCCTTTCAAGTTAT---TATCCTGCGTTGCATGTATA 1488
consensus_6907#1 CACAAGCTCCGTTAATGTTGGAACCTATTTGACACATGCTCATCCTTTATTATATGGTGC 380
* ** *** **** *** ** * ** ***** ** ***
consensus_6907#0 AATCTA-GGCCCCTTTT------------------------------------------- 1504
consensus_6907#1 AGTCTATGGATCCTTTCTAAAGAAAGTGAATACCGAATGGATTTTCTCTGAACAAAAATC 440
* **** ** *****
consensus_6907#0 --------------------------
consensus_6907#1 ATAAATGTACTCCGATTAAAAAAAAA 466
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||