These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence [TCCTCGCACCATGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCCTCCTCCTCCTCCTCCATCCTCACGTCGCGCATCCGTCGCCGCCGATGGTCCTTGTGCCGAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGTTGCTCTGCCGTGCCGGTCAACCCGAAGCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAATAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTGCAATGCTCGGTGGCACGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAATCTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGATTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAGATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGTGTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCATGTTTAGATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGAATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGACAACT] [+] EMBL CB658259 [TCCTCGCACCATGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCCTCCTCCTCCTCCTCCATCCTCACGTCGCGCATCCGTCGCCGCCGATGGTCCTTGTGCCGAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGTTGCTCTGCCGTGCCGGTCAACCCGAAGCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAATAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTGCAATGCTCGGTGGCACGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAATCTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGATTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAGATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGTGTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCATGTTTAGATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGAATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGACAACT] [+] EMBL CB658189 [TCCTCGCACCATGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCCTCCTCCTCCTCCTCCATCCTCACGTCGCGCATCCGTCGCCGCCGATGGTCCTTGTGCCGAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGTTGCTCTGCCGTGCCGGTCAACCCGAAGCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAATAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTGCAATGCTCGGTGGCACGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAATCTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGATTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAGATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGTGTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCATGTTTAGATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGAATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGA ] consensusID : consensus_6914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CGAGCAAGGAGGCAAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCAGCAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTCCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTGACCACAACATCAAGTGGTCCAGCGCTGTTCATCTTCTATCCAGGCTAGTCGCCATCGATCTAGTGCCGGACCTGAAGAAGCTGAAGAAAGAGGTCAAGATGGATATGTAAGAAGGGATTTGTCAATTGCTTTAGGTTGCAATGCTAATTTTGTTGGGGTGGATTGGAGTTCTCCCATGGATCCCTTTGTTGATTTTATTTGGGTGAATCTTTGGTTATTGTGTTTGCCTTATGGTGTTGTGCATCCGATTTGGATTTGGTTGTGTCGAACTATGAAAGTCTGATTTTGGGAAGTGGTTCTATGAGATTAGATTATTGTTAGGATTATCGGTCGGTGTAGTTGTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTG] [+] EMBL AK062934 [CGAGCAAGGAGGCAAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCAGCAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTCCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTGACCACAACATCAAGTGGTCCAGCGCTGTTCATCTTCTATCCAGGCTAGTCGCCATCGATCTAGTGCCGGACCTGAAGAAGCTGAAGAAAGAGGTCAAGATGGATATGTAAGAAGGGATTTGTCAATTGCTTTAGGTTGCAATGCTAATTTTGTTGGGGTGGATTGGAGTTCTCCCATGGATCCCTTTGTTGATTTTATTTGGGTGAATCTTTGGTTATTGTGTTTGCCTTATGGTGTTGTGCATCCGATTTGGATTTGGTTGTGTCGAACTATGAAAGTCTGATTTTGGGAAGTGGTTCTATGAGATTAGATTATTGTTAGGATTATCGGTCGGTGTAGTTGTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTG] consensusID : consensus_6914#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [CCGCCCACGCGTCCGAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCANAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTNCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTTTACCACAACATCAAAGTGGGTCCAACGCTGTTTC] [+] EMBL AU033220 [CCGCCCACGCGTCCGAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCANAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTNCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTTTACCACAACATCAAAGTGGGTCCAACGCTGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6914#1 -CGAGCAAGGAGGCAAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCAC 59 consensus_6914#2 CCGCCCACGCGTCCGAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCAC 60 consensus_6914#0 -----------TCCTCGCACCA-TGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCC 48 * *** * * * ***** * * * ** * *** * * consensus_6914#1 CTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCA 119 consensus_6914#2 CTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCA 120 consensus_6914#0 TCCTCCTCCTCCTCCATCCTCACGTCG-CGCATCCGTCGCCGCCGATGGTCCT-TGTGCC 106 *** ****** ** ** * * ***** * * **** **** * ** consensus_6914#1 ACGACCACGGCGAAGGGGACAAGAAGGCGGCAGCAGACCAGCAGTGGCCATGGTGATGGT 179 consensus_6914#2 ACGACCACGGCGAAGGGGACAAGAAGGCGGCAN-AGACCAGCAGTGGCCATGGTGATGGT 179 consensus_6914#0 GAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGT-TGCTCTGCCGTGCCGGTCAACCCGAA 165 * *** * * * * * * ** *** * * * consensus_6914#1 GGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCG---GTGGAGGGCAGCGTGAAGG 236 consensus_6914#2 GGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCG---GTGGAGGGCAGCGTGAAGG 236 consensus_6914#0 GCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAA 225 * ** * * ** * **** * *********** * **** * ** consensus_6914#1 CTGGCAACGACC-TCAACTTCTCCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTG 295 consensus_6914#2 CTGGCAACGACC-TCAACTTCTNCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTG 295 consensus_6914#0 TAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTG-CAATGCTCGGTGGCA 284 * * * * * ** ** * * * * ** ***** * ** consensus_6914#1 CAAG-CGCAGGCGGCAACGGTGTG-ACCACAACATCAAG--TGGTC-CAGCGCTGTTCAT 350 consensus_6914#2 CAAG-CGCAGGCGGCAACGGTGTTTACCACAACATCAAAGTGGGTC-CAACGCTGTTTC- 352 consensus_6914#0 CGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAAT 344 * ** * *** * ** * *** ** ** * * * **** * consensus_6914#1 CTTCTATCCAGGCTAGTCGCCATCGATCTAGTGCCGGACCTGAA----GAAGCTGAAGAA 406 consensus_6914#2 ------------------------------------------------------------ consensus_6914#0 CTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGA 404 consensus_6914#1 AGAGGTCAAGATGGATATGTAAGAAGGGATTTGTCAATTGCTTTAGGTTGCAATGCTAAT 466 consensus_6914#2 ------------------------------------------------------------ consensus_6914#0 TTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGT 464 consensus_6914#1 TTTGTTGGGGTGG-ATTGGAGTTCTCCCATGGATCCCTTTGTTGATTTTATTTGGGTGAA 525 consensus_6914#2 ------------------------------------------------------------ consensus_6914#0 TCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAG 524 consensus_6914#1 TCTTTG------GTTATTGTGTTTGCCTTATGGTGTTGTGCATCCGATTTGGATTTGGTT 579 consensus_6914#2 ------------------------------------------------------------ consensus_6914#0 ATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGT 584 consensus_6914#1 GTGTCGAACTATGAAAGTCTGATTTTGGGAAGTGGTTCTATGAGATTAGATTATTGTTAG 639 consensus_6914#2 ------------------------------------------------------------ consensus_6914#0 GTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCAT 644 consensus_6914#1 GATTATCGGTCGGTGTAGTTGTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGA 699 consensus_6914#2 ------------------------------------------------------------ consensus_6914#0 GTTTA--GATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGA 702 consensus_6914#1 TCTTTG------------------------------------------ 705 consensus_6914#2 ------------------------------------------------ consensus_6914#0 ATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGACAACT 750 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||