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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1332 fasta sequence
[CTACACTGCAAGAAAGGCAAGTATAGGGGTGGCAGGTAGTTTATATTCACTGGAAACCGAGAACTTCACTCCTCCCAGCACTCCACACTAGGAGGATGCTCACTGTCTGACTGACTGACTGGCTGCTGCTGCTGCTCATTCCTTCTCCTACTCTGCCTGCCTCCTCTGCTGTGTCCTTGGGAGAATTCTTCAGGGACAGTATCCCTGCAGAGGTGAGATCATGGGACAGTCGAAGAAGAAGTTCCGCGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCTCCGAGATCAGGCACCCTCTCCTTAAGAGGAGGGTGTGGCTGGGTACCTTTGAGACGGCGGAGGAGGCGGCGCGGGCGTACGACGAGGCCGCCATCCTGATGAGCGGCCGCAACGCCAAGACCAACTTCCCAGTCGCGAGGAACGCCACGGGGGAGCTCACACCGGCGGCTGCGGTGGCAGGGCGGGATGGCCGTGTCGGCGGCGGCAGCGGCAGCTCGTCCTCAATGACGGCCAACGGCGGCGGGAACAGCCTGTCTCAGATCCTCAGCGCCAAGCTCCGCAAGTGCTGCAAGACGCCGTCGCCGTCGCTCACCTGCCTCCGCCTTGACCCGGAGAAGTCCCACATTGGCGTCTGGCAGAAGCGCGCCGGCGCACGCGCTGACTCCAGCTGGGTCATGACCGTCGAGCTCAACAAGGACACGGCCGTGTCGTCGGCTGCGACGGTGGCAGCAGCAACAGCAGTGTCGTCCAGCGACCAGCCGACTCCGAGTGACAGCACAGTCACAACGACGTCCACGTCCACCACGGGCTCGCCGTCGCCACCACCTCCGGCAATGGACGACGAGGAGAGGATCGCGCTGCAGATGATCGAGGAGCTGCTGGGCAGGAGCGGCCCGGGCTCGCCGTCACATGGGCTGCTGCACGGTGGTGAAGGTA-GCCTCGTCATCTGAATTCCGGAAGAA-CAGG-AAAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCAT-CTAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGATAGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGATTACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGTCCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCAGACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATTGT-NNTAAAAAAAAAAAAAAAAAA]
[+] EMBL AK061163 [CTACACTGCAAGAAAGGCAAGTATAGGGGTGGCAGGTAGTTTATATTCACTGGAAACCGAGAACTTCACTCCTCCCAGCACTCCACACTAGGAGGATGCTCACTGTCTGACTGACTGACTGGCTGCTGCTGCTGCTCATTCCTTCTCCTACTCTGCCTGCCTCCTCTGCTGTGTCCTTGGGAGAATTCTTCAGGGACAGTATCCCTGCAGAGGTGAGATCATGGGACAGTCGAAGAAGAAGTTCCGCGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCTCCGAGATCAGGCACCCTCTCCTTAAGAGGAGGGTGTGGCTGGGTACCTTTGAGACGGCGGAGGAGGCGGCGCGGGCGTACGACGAGGCCGCCATCCTGATGAGCGGCCGCAACGCCAAGACCAACTTCCCAGTCGCGAGGAACGCCACGGGGGAGCTCACACCGGCGGCTGCGGTGGCAGGGCGGGATGGCCGTGTCGGCGGCGGCAGCGGCAGCTCGTCCTCAATGACGGCCAACGGCGGCGGGAACAGCCTGTCTCAGATCCTCAGCGCCAAGCTCCGCAAGTGCTGCAAGACGCCGTCGCCGTCGCTCACCTGCCTCCGCCTTGACCCGGAGAAGTCCCACATTGGCGTCTGGCAGAAGCGCGCCGGCGCACGCGCTGACTCCAGCTGGGTCATGACCGTCGAGCTCAACAAGGACACGGCCGTGTCGTCGGCTGCGACGGTGGCAGCAGCAACAGCAGTGTCGTCCAGCGACCAGCCGACTCCGAGTGACAGCACAGTCACAACGACGTCCACGTCCACCACGGGCTCGCCGTCGCCACCACCTCCGGCAATGGACGACGAGGAGAGGATCGCGCTGCAGATGATCGAGGAGCTGCTGGGCAGGAGCGGCCCGGGCTCGCCGTCACATGGGCTGCTGCACGGTGGTGAAGGTA GCCTCGTCATCTGAATTCCGGAAGAA CAGG AAAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCAT CTAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGATAGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGATTACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGTCCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCAGACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATT ]
[+] EMBL AU033275 [ GGNCTGCTGCACGGTGGTGAAGGTANCCCCCGTCATCTGAATTCCGGAAGAACCAGGAAAAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCATCCTAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGATAGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGATTACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGTCCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCAGACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATTGT NNTAAAAA ]
[+] EMBL AU097009 [ AATTCCGGAAGAA CAGG AAAGAAATTGAAAATGCAAGGTT AAACAGCATGATCAGGTCACCAT CTAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGATAGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGATTACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGTCCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCAGACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATTGTAANTGTGTAAAAAAAAAAAAAA]
consensusID : consensus_6917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1186 fasta sequence
[CACGCTACACTGCAAGAAAGGCAAGTATAGGGGTGGCAGGTAGTTTATATTCACTGGAAACCGAGAACTTCACTCCTCCCAGCACTCCACACTAGGAGGATGCTCACTGTCTGAATGACTGACTGGCTGCTGCTGCTGCTCATTCCTTCTCCTACTCTGCCTGCCTCCTCTGCTGTGTCCTTGGGAGAATTCTTCAGGGACAGTATCCCTGCAGAGGTGAGATCATGGGACAGTCGAAGAAGAAGTTCCGCGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCTCCGAGATCAGGCACCCTCTCCTTAAGAGGAGGGTGTGGCTGGGTACCTTTGAGACGGCGGAGGAGGCGGCGCGGGCGTACGACGAGGCCGCCATCCTGATGAGCGGCCGCAACGCCAAGACCAACTTCCCAGTCGCGAGGAACGCCACGGGGGAGCTCACACCGGCGGCTGCGGTGGCAGGGCGGGATGGCCGTGTCGGCGGCGGCAGCGGCAGCTCGTCCTCAATGACGGCCAACGGCGGCGGGAACAGCCTGACTCCAGCTGGGTCATGACCGTCGAGCTCAACAAGGACACGGCCGTGTCGTCGGCTGCGACGGTGGCAGCAGCAACAGCAGTGTCGTCCAGCGACCAGCCGACTCCGAGTGACAGCACAGTCACAACGACGTCCACGTCCACCACGGGCTCGCCGTCGCCACCACCTCCGGCAATGGACGACGAGGAGAGGATCGCGCTGCAGATGATCGAGGAGCTGCTGGGCAGGAGCGGCCCGGGCTCGCCGTCACATGGGCTGCTGCACGGTGGTGAAGGTAGCCTCGTCATCTGAATTCCGGAAGAACAGGAAAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCATCTAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGATAGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGATTACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGTCCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCAGACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATT]
[+] EMBL AK066422 [CACGCTACACTGCAAGAAAGGCAAGTATAGGGGTGGCAGGTAGTTTATATTCACTGGAAACCGAGAACTTCACTCCTCCCAGCACTCCACACTAGGAGGATGCTCACTGTCTGAATGACTGACTGGCTGCTGCTGCTGCTCATTCCTTCTCCTACTCTGCCTGCCTCCTCTGCTGTGTCCTTGGGAGAATTCTTCAGGGACAGTATCCCTGCAGAGGTGAGATCATGGGACAGTCGAAGAAGAAGTTCCGCGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCTCCGAGATCAGGCACCCTCTCCTTAAGAGGAGGGTGTGGCTGGGTACCTTTGAGACGGCGGAGGAGGCGGCGCGGGCGTACGACGAGGCCGCCATCCTGATGAGCGGCCGCAACGCCAAGACCAACTTCCCAGTCGCGAGGAACGCCACGGGGGAGCTCACACCGGCGGCTGCGGTGGCAGGGCGGGATGGCCGTGTCGGCGGCGGCAGCGGCAGCTCGTCCTCAATGACGGCCAACGGCGGCGGGAACAGCCTGACTCCAGCTGGGTCATGACCGTCGAGCTCAACAAGGACACGGCCGTGTCGTCGGCTGCGACGGTGGCAGCAGCAACAGCAGTGTCGTCCAGCGACCAGCCGACTCCGAGTGACAGCACAGTCACAACGACGTCCACGTCCACCACGGGCTCGCCGTCGCCACCACCTCCGGCAATGGACGACGAGGAGAGGATCGCGCTGCAGATGATCGAGGAGCTGCTGGGCAGGAGCGGCCCGGGCTCGCCGTCACATGGGCTGCTGCACGGTGGTGAAGGTAGCCTCGTCATCTGAATTCCGGAAGAACAGGAAAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCATCTAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGATAGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGATTACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGTCCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCAGACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6917#0 ----CTACACTGCAAGAAAGGCAAGTATAGGGGTGGCAGGTAGTTTATATTCACTGGAAA 56
consensus_6917#1 CACGCTACACTGCAAGAAAGGCAAGTATAGGGGTGGCAGGTAGTTTATATTCACTGGAAA 60
********************************************************
consensus_6917#0 CCGAGAACTTCACTCCTCCCAGCACTCCACACTAGGAGGATGCTCACTGTCTGACTGACT 116
consensus_6917#1 CCGAGAACTTCACTCCTCCCAGCACTCCACACTAGGAGGATGCTCACTGTCTGAATGACT 120
****************************************************** *****
consensus_6917#0 GACTGGCTGCTGCTGCTGCTCATTCCTTCTCCTACTCTGCCTGCCTCCTCTGCTGTGTCC 176
consensus_6917#1 GACTGGCTGCTGCTGCTGCTCATTCCTTCTCCTACTCTGCCTGCCTCCTCTGCTGTGTCC 180
************************************************************
consensus_6917#0 TTGGGAGAATTCTTCAGGGACAGTATCCCTGCAGAGGTGAGATCATGGGACAGTCGAAGA 236
consensus_6917#1 TTGGGAGAATTCTTCAGGGACAGTATCCCTGCAGAGGTGAGATCATGGGACAGTCGAAGA 240
************************************************************
consensus_6917#0 AGAAGTTCCGCGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCTCCGAGATCAGGCACC 296
consensus_6917#1 AGAAGTTCCGCGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCTCCGAGATCAGGCACC 300
************************************************************
consensus_6917#0 CTCTCCTTAAGAGGAGGGTGTGGCTGGGTACCTTTGAGACGGCGGAGGAGGCGGCGCGGG 356
consensus_6917#1 CTCTCCTTAAGAGGAGGGTGTGGCTGGGTACCTTTGAGACGGCGGAGGAGGCGGCGCGGG 360
************************************************************
consensus_6917#0 CGTACGACGAGGCCGCCATCCTGATGAGCGGCCGCAACGCCAAGACCAACTTCCCAGTCG 416
consensus_6917#1 CGTACGACGAGGCCGCCATCCTGATGAGCGGCCGCAACGCCAAGACCAACTTCCCAGTCG 420
************************************************************
consensus_6917#0 CGAGGAACGCCACGGGGGAGCTCACACCGGCGGCTGCGGTGGCAGGGCGGGATGGCCGTG 476
consensus_6917#1 CGAGGAACGCCACGGGGGAGCTCACACCGGCGGCTGCGGTGGCAGGGCGGGATGGCCGTG 480
************************************************************
consensus_6917#0 TCGGCGGCGGCAGCGGCAGCTCGTCCTCAATGACGGCCAACGGCGGCGGGAACAGCCTGT 536
consensus_6917#1 TCGGCGGCGGCAGCGGCAGCTCGTCCTCAATGACGGCCAACGGCGGCGGGAACAGCCTG- 539
***********************************************************
consensus_6917#0 CTCAGATCCTCAGCGCCAAGCTCCGCAAGTGCTGCAAGACGCCGTCGCCGTCGCTCACCT 596
consensus_6917#1 ------------------------------------------------------------
consensus_6917#0 GCCTCCGCCTTGACCCGGAGAAGTCCCACATTGGCGTCTGGCAGAAGCGCGCCGGCGCAC 656
consensus_6917#1 ------------------------------------------------------------
consensus_6917#0 GCGCTGACTCCAGCTGGGTCATGACCGTCGAGCTCAACAAGGACACGGCCGTGTCGTCGG 716
consensus_6917#1 ------ACTCCAGCTGGGTCATGACCGTCGAGCTCAACAAGGACACGGCCGTGTCGTCGG 593
******************************************************
consensus_6917#0 CTGCGACGGTGGCAGCAGCAACAGCAGTGTCGTCCAGCGACCAGCCGACTCCGAGTGACA 776
consensus_6917#1 CTGCGACGGTGGCAGCAGCAACAGCAGTGTCGTCCAGCGACCAGCCGACTCCGAGTGACA 653
************************************************************
consensus_6917#0 GCACAGTCACAACGACGTCCACGTCCACCACGGGCTCGCCGTCGCCACCACCTCCGGCAA 836
consensus_6917#1 GCACAGTCACAACGACGTCCACGTCCACCACGGGCTCGCCGTCGCCACCACCTCCGGCAA 713
************************************************************
consensus_6917#0 TGGACGACGAGGAGAGGATCGCGCTGCAGATGATCGAGGAGCTGCTGGGCAGGAGCGGCC 896
consensus_6917#1 TGGACGACGAGGAGAGGATCGCGCTGCAGATGATCGAGGAGCTGCTGGGCAGGAGCGGCC 773
************************************************************
consensus_6917#0 CGGGCTCGCCGTCACATGGGCTGCTGCACGGTGGTGAAGGTAGCCTCGTCATCTGAATTC 956
consensus_6917#1 CGGGCTCGCCGTCACATGGGCTGCTGCACGGTGGTGAAGGTAGCCTCGTCATCTGAATTC 833
************************************************************
consensus_6917#0 CGGAAGAACAGGAAAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCATC 1016
consensus_6917#1 CGGAAGAACAGGAAAGAAATTGAAAATGCAAGGTTAAAACAGCATGATCAGGTCACCATC 893
************************************************************
consensus_6917#0 TAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGAT 1076
consensus_6917#1 TAAGATCAAGGATCTGGTAGGGTGGTTGGTGCACAGGCAGTTAAGATTGCTACATATGAT 953
************************************************************
consensus_6917#0 AGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGAT 1136
consensus_6917#1 AGGTATATCTCTATTACTACTACATATCCAGCTTAATTAGGAAACAATTATAAGATCGAT 1013
************************************************************
consensus_6917#0 TACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGT 1196
consensus_6917#1 TACTACTGTGTGAAGTGAAGCTGTGTATTTATTAAAGACTTACTTGTATGTACAAGACGT 1073
************************************************************
consensus_6917#0 CCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCA 1256
consensus_6917#1 CCCCGTCATTATAGTCATACTGGTGAAAGCTCTGCTATGTATCAACGTCATCAGAGATCA 1133
************************************************************
consensus_6917#0 GACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATTGTNNTAA 1316
consensus_6917#1 GACTACATATATATAAGTGGTGTCAACTTCTAATAAAAGTAAATAAAAACATT------- 1186
*****************************************************
consensus_6917#0 AAAAAAAAAAAAAAAA 1332
consensus_6917#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||