These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1264 fasta sequence [TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAATCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAGGTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAGCGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACATGAGAATATAAGATAAGAAAAAGGTACCAGCTTGGC-ACTGCT-GTAAATGACTGGCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATT-TAACATCGACCCA-GGTGCCTGGAGATGGTCTTTTGAGGCTCATTTGACA-TTCTTTTTCTAACATACAT-TTCA-ATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAGAACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACAAAGAAATGGTTTGCTCACGAATGACAAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAAGTTGATTGGTAAAAAAAAAA] [+] EMBL AK108424 [TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAATCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAGGTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAGCGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACATGAGAATATAAGATAAGAAAAAGGTACCAGCTTGGC ACTGCT GTAAATGACTGGCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATT TAACATCGACCCA GGTGCCTGGAGATGGTCTTTTGAGGCTCATTTGACA TTCTTTTTCTAACATACAT TTCA ATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAGAACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACAAAGAAATGGTTTGCTCACGAATGACAAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAA ] [+] EMBL CA753185 [ ATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCNCTATAATATCAACATAGT ] [+] EMBL BI812022 [ tATAT AGATAAGAAAAAGGTACCAGCTTGGCAACT CTGGTAAATGACT GCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATTGTAACATCGACCCACGGTGCCTGGAGAT GCCTTTTGAGGCTCATTTGACACTTCTTTTTCTAACAGACATGGTCAGATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAG ACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACCAAGAAATGGTTTGCTCACGAATGACCAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAACTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAAGTTGATTGGTAAAAAAAAAA] consensusID : consensus_6919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTGTAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCGATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTCGGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACAAAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTTCTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA] [+] EMBL BI808328 [GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTGTAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCGATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTCGGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACAAAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTTCTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6919#0 TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAA 60 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAG 120 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTC 180 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 ACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTC 240 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 CCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTA 300 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAAT 360 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGG 420 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTT 480 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCA 540 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTT 600 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 ATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGA 660 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAG 720 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 CGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACAT 780 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GAGAATATAAGATAAGAAAAAGGTACCAGCTTGGCACTGCTGTAAATGACTGGCAGTTGG 840 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 AACCTGCGCCTT-CAGAATTCTGTTTG-AAGCATCATTTAACAT-CGACCCAGGTGCCTG 897 consensus_6919#1 -----GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTG 55 * *** * *********** ** ********* ****** ********** **** consensus_6919#0 GAGATGGTCTTTTGAGGCTCATTT-GACATTCTTTTTCT--AACAT-ACATTTCAATTCG 953 consensus_6919#1 TAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCG 115 ***** *** ********** ********* ** ***** ***** ******* consensus_6919#0 ATGGGGGTTCAGACTT-CAGAGGCAACT--GAATATTGGAAGTT-AGAACAAGTCTT-TC 1008 consensus_6919#1 ATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTC 175 **************** ***** *** ****** ******* ************ ** consensus_6919#0 TGACTTCC-AGGTCTGCTGAGGTTTTAC-AAAGAAATGG-TTTGCT-CACGAATG--ACA 1062 consensus_6919#1 GGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACA 235 ******* **************** ** ********** ****** ******** *** consensus_6919#0 AAAATTTTGGCATGTAGCATTTT--GTCCTTTGTATTACTTGTCTTTTGTATAGTATTTT 1120 consensus_6919#1 AAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTT 295 ******************* *** *************** ******************* consensus_6919#0 CTTCA-GAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATT 1179 consensus_6919#1 CTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA---- 351 ***** ************************************************** consensus_6919#0 TATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAA 1239 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TGAAAGTTGATTGGTAAAAAAAAAA 1264 consensus_6919#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||