These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1774 fasta sequence [TCCGGCCACGCCACAATGTCCACCACCACCACCACCACCGTCACAGAACCCGACAATGCCGAAGCCTCGCCATCGCCGTCGCTGCTGTACCCGGCGGCGGCGGAGGCGTCGGCCGCGGTCGCCGCCCTCCTCGCGGACCTCCGGCTGGGCCACGCGGCGCACACCCGCGTCTCCGCCACGCGGCTGTCCGGCGGCGAGCGGCGTCGCGTGTCCATCGGGCTCGCCCTCCTCCGGGACCCCGGGGTCCTCCTCCTCGACGAGCCCACCTCCGGCCTCGACTCCTCCTCCGCGCACGTCGTCGTCGGCTGCCTGCGCGCCGTCGCGGCCGCGCGCGGCACGACGGTGGTGCTCTCCATCCACCAGCCCAGCTCGCGCCTCCTCTCCGCCGTGGACTCCCTCCTCCTCCTCTCCCGTGGCGCCGTCGTGCACCACGGCTCCGTCGACTCCCTCGACGCCGCGCTCCTCTCCCACGGCCTCGCCGTGCCGGCGCAGCTCAACCCGCTGGAGTTTGCCCTCGAGGTACTCGACCAGATGCCCCACCCGTCCGCCTCCTCCCCTGAGCCCAAGACGACGGAGGAGCTCGCCGCCGTGACGTCCTCCAAGTCGTCGTCGTCGTCAACCTCGCCGTGCTCGAGGATACACGAGGTGGTGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTGCTGCTGACCAACTTCCTGGAGTCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCGACGGCGAGGGCGGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACGACGGAGACGCTGCCGACGTTCGTGTCGGAGCGGCCGATCGTGCTGGCGGAGACGGCGTC-GGGGCTGTACAGGCTGTCGTCGCACGCGGCGGCGGCGACGCT-GGTGTTCCTCCCGTACCTCCTGGCGGTGGCGCTCCTCTACTCCGCCTGCGTCTACCTCCTCGTCGGCCTCTGCGCGTCGGCGGCGGCGTTCGCGGCGTTCGTGATGGTGGTGTGGGCGGTGGTGCTGACGGCGAACTCCTTCGTGCTGTTCGTGAGCTCGTTCGCGCCGGACTACATCGCCGGGATGTCGCTGGTGTCGGTGTCCCTCGCCGGCTTCTTCCTCTTCTCCGGCTACTTCCTGTCCAGGGGGAGCATGCCGCCGTACTGGGTGTTCATGCACTACGTCTCCCCGTACAAGTACGCCCTCGACGCCCTCCTCGCCAACGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCGGCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGCGGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGGTGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGCTCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACGAAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAAGGTGGTGATCGAGTTAATTAACTGGTAATTAAGCTGCTGCTGCTGCTATACTGATAAGTGATGATGTGTATATTTTATGAACATAAAAAAACGAGCCTTTTATATGTGTAATGATGAGTGGTTGATAGTGCGATCTTGACTTGAAAATCACGATCG] [+] EMBL AK105826 [TCCGGCCACGCCACAATGTCCACCACCACCACCACCACCGTCACAGAACCCGACAATGCCGAAGCCTCGCCATCGCCGTCGCTGCTGTACCCGGCGGCGGCGGAGGCGTCGGCCGCGGTCGCCGCCCTCCTCGCGGACCTCCGGCTGGGCCACGCGGCGCACACCCGCGTCTCCGCCACGCGGCTGTCCGGCGGCGAGCGGCGTCGCGTGTCCATCGGGCTCGCCCTCCTCCGGGACCCCGGGGTCCTCCTCCTCGACGAGCCCACCTCCGGCCTCGACTCCTCCTCCGCGCACGTCGTCGTCGGCTGCCTGCGCGCCGTCGCGGCCGCGCGCGGCACGACGGTGGTGCTCTCCATCCACCAGCCCAGCTCGCGCCTCCTCTCCGCCGTGGACTCCCTCCTCCTCCTCTCCCGTGGCGCCGTCGTGCACCACGGCTCCGTCGACTCCCTCGACGCCGCGCTCCTCTCCCACGGCCTCGCCGTGCCGGCGCAGCTCAACCCGCTGGAGTTTGCCCTCGAGGTACTCGACCAGATGCCCCACCCGTCCGCCTCCTCCCCTGAGCCCAAGACGACGGAGGAGCTCGCCGCCGTGACGTCCTCCAAGTCGTCGTCGTCGTCAACCTCGCCGTGCTCGAGGATACACGAGGTGGTGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTGCTGCTGACCAACTTCCTGGAGTCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCGACGGCGAGGGCGGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACGACGGAGACGCTGCCGACGTTCGTGTCGGAGCGGCCGATCGTGCTGGCGGAGACGGCGTC GGGGCTGTACAGGCTGTCGTCGCACGCGGCGGCGGCGACGCT GGTGTTCCTCCCGTACCTCCTGGCGGTGGCGCTCCTCTACTCCGCCTGCGTCTACCTCCTCGTCGGCCTCTGCGCGTCGGCGGCGGCGTTCGCGGCGTTCGTGATGGTGGTGTGGGCGGTGGTGCTGACGGCGAACTCCTTCGTGCTGTTCGTGAGCTCGTTCGCGCCGGACTACATCGCCGGGATGTCGCTGGTGTCGGTGTCCCTCGCCGGCTTCTTCCTCTTCTCCGGCTACTTCCTGTCCAGGGGGAGCATGCCGCCGTACTGGGTGTTCATGCACTACGTCTCCCCGTACAAGTACGCCCTCGACGCCCTCCTCGCCAACGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCGGCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGCGGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGGTGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGCTCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACGAAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAAGGTGGTGATCGAGTTAATTAACTGGTAATTAAGCTGCTGCTGCTGCTATACTGATAAGTGATGATGTGTATATTTTATGAACATAAAAAAACGAGCCTTTTATATGTGTAATGATGAGTGGTTGATAGTGCGATCTTGACTTGAAAATCACGATCG] [+] EMBL AU033292 [ TGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTNCTGCTGACCAACTTCCTGGAGTCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCNACGGANGNNGCGGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACGACGGAGACGCTGCCGACGTTCGTTTCGGAGCGGCCGATCGTNCTGGCGGAGACGGCGTCGGGGGCTGTACAGGNTGTCGTCGCACGCGGCGGCGGCNACGCTGGGTNTTCCTCCCGTACCTNCTGGCGGTG ] [+] EMBL AU225581 [ gccgctCGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCGGCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGCGGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGGTGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGCTCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACGAAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAAGGTGGTGATCGAGTTAATTAACTGGTAATAAAGCTGCTGCTGCTGCTATACTGATAAGTGATGATGTGTATATTTTAgcgg ] consensusID : consensus_6922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [TGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAANCAACTNCTGNTGACCAACTTNNTGGANTNGGTGGTNGNGNGGACNATTNTTNATCNNATCNAAANNACNGNCNCCATCGGNANGTTAGCCNTNAATAGTAGNCGTNGNNGNANNCNANTTANTNGTCTNGNCGCTACTANNGATCATCTGGNCNCNGTTCANTTTTNCGTNGGGTGACGTNCTTTNNTTANAGGATTCNNNTCTGCGCTCTNTTGCTNCTGGCTCTGCGAGCTNGTGCTTGCGACNNGTAGAAGGGNTATTTATATATATANTNTATTTNANATTTTNTATNTTNNTTTNNANANNTNTNTGNCCTNNTNCNNNTGTTANATACTNNNGGTTTTTTTTNNTTTTTTNGCGTNGTGGNCGTTTTNCCNTNNTNNTNNTTTTGNTTANGTTTNTNTCTTNNTNTATTTTTATNTTTGGGTAGTTTATTNNTNTTATTGGACTTTNTATATNGTNTNTNGNNATTGTNTTTTTTNGTANTTNTTTNGGNGTNTTNTAGATNNTTNTCNTTNTNNTNNNTNATTGTTNGTTTTTTNTTN] [+] EMBL AU070631 [TGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAANCAACTNCTGNTGACCAACTTNNTGGANTNGGTGGTNGNGNGGACNATTNTTNATCNNATCNAAANNACNGNCNCCATCGGNANGTTAGCCNTNAATAGTAGNCGTNGNNGNANNCNANTTANTNGTCTNGNCGCTACTANNGATCATCTGGNCNCNGTTCANTTTTNCGTNGGGTGACGTNCTTTNNTTANAGGATTCNNNTCTGCGCTCTNTTGCTNCTGGCTCTGCGAGCTNGTGCTTGCGACNNGTAGAAGGGNTATTTATATATATANTNTATTTNANATTTTNTATNTTNNTTTNNANANNTNTNTGNCCTNNTNCNNNTGTTANATACTNNNGGTTTTTTTTNNTTTTTTNGCGTNGTGGNCGTTTTNCCNTNNTNNTNNTTTTGNTTANGTTTNTNTCTTNNTNTATTTTTATNTTTGGGTAGTTTATTNNTNTTATTGGACTTTNTATATNGTNTNTNGNNATTGTNTTTTTTNGTANTTNTTTNGGNGTNTTNTAGATNNTTNTCNTTNTNNTNNNTNATTGTTNGTTTTTTNTTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6922#0 TCCGGCCACGCCACAATGTCCACCACCACCACCACCACCGTCACAGAACCCGACAATGCC 60 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GAAGCCTCGCCATCGCCGTCGCTGCTGTACCCGGCGGCGGCGGAGGCGTCGGCCGCGGTC 120 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GCCGCCCTCCTCGCGGACCTCCGGCTGGGCCACGCGGCGCACACCCGCGTCTCCGCCACG 180 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 CGGCTGTCCGGCGGCGAGCGGCGTCGCGTGTCCATCGGGCTCGCCCTCCTCCGGGACCCC 240 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GGGGTCCTCCTCCTCGACGAGCCCACCTCCGGCCTCGACTCCTCCTCCGCGCACGTCGTC 300 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GTCGGCTGCCTGCGCGCCGTCGCGGCCGCGCGCGGCACGACGGTGGTGCTCTCCATCCAC 360 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 CAGCCCAGCTCGCGCCTCCTCTCCGCCGTGGACTCCCTCCTCCTCCTCTCCCGTGGCGCC 420 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GTCGTGCACCACGGCTCCGTCGACTCCCTCGACGCCGCGCTCCTCTCCCACGGCCTCGCC 480 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GTGCCGGCGCAGCTCAACCCGCTGGAGTTTGCCCTCGAGGTACTCGACCAGATGCCCCAC 540 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 CCGTCCGCCTCCTCCCCTGAGCCCAAGACGACGGAGGAGCTCGCCGCCGTGACGTCCTCC 600 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 AAGTCGTCGTCGTCGTCAACCTCGCCGTGCTCGAGGATACACGAGGTGGTGGTCCTGTAC 660 consensus_6922#1 -------------------------------------------------TGGTCCTGTAC 11 *********** consensus_6922#0 AAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTGCTGCTGACCAACTTCCTGGAG 720 consensus_6922#1 AAGCGGGCATGGAAGGTGGTGTACCGAAGCAANCAACTNCTGNTGACCAACTTNNTGGAN 71 ******************************** ***** *** ********** **** consensus_6922#0 TCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCGACGGCGAGGGC 780 consensus_6922#1 TNGGTGGTNGNGNGGACNATTNTTNATCNNATCNAAANNACNGNCNCCATCGGN-ANGTT 130 * ****** * * **** * * *** * * * * * * *** * * consensus_6922#0 GGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACG 840 consensus_6922#1 AGCCNTNAATAGTAGNCGTNGNNGNANNCNANT-TANTNGTCTNGNCGCTACTANNGATC 189 ** * ** * * * * * * * ** * consensus_6922#0 ACGGAGACGCTGCCGACGTTCGTGTCGGAGCGGCCGATCGTGCTGGCGGAGACGGCGTCG 900 consensus_6922#1 ATCTGGNCNCNGTTCANTTTTNCGTNGG-GTGACGTNCTTTNNTTANAGGATTCNNNTCT 248 * * * * * * ** ** ** * * * * * * ** consensus_6922#0 GGGCTGTACAGGCTGTCGTCGCACGCGGCGGCGGCGACG-CTGGTGTTCCTCCCGTACCT 959 consensus_6922#1 GCGCTCTNTTGCTNCTGGCTCTGCGAGCTNGTGCTTGCGACNNGTAGAAGGGNTATTTAT 308 * *** * * * * ** * * * ** * ** * * consensus_6922#0 CCTGGCGGTGGCGCTCCTCTACTCCGCCTGCGTCTACCTCCTCGTCGGCCTCTGCGCGTC 1019 consensus_6922#1 ATATATANTNTATTTNANATTTTNTATNTTNNTTTNNANANNTNTNTGNCCTNNTNCNNN 368 * * * * * * * * * * * consensus_6922#0 GGCGGCGGCGTTCGCGGCGTTCGTGATGGTGGTGTGGGCGGTGGTGCTGACGGCGAACTC 1079 consensus_6922#1 TGTTANATACTNNNGGTTTTTTTTNNT--TTTTTNGCGTNGTGGNCGTTTTNCCNTNNTN 426 * * * ** * * * * * * **** * * * consensus_6922#0 CTTCGTGCTGTTCGTGAGCTCGTTCGCGCCGGACTACATCGCCGGGATGTCGCTGGTGTC 1139 consensus_6922#1 NTNNTT-TTGNTTANGTTTNTNTCTTNNTNTATTTTTATNTTTGGGTAGTT-----TATT 480 * * ** * * * * ** *** ** * * consensus_6922#0 GGTGTCCCTCGCCGGCTTCTTCCTCTTCTCCGGCTACT-TCCTGTCCAGGGGGAGCATGC 1198 consensus_6922#1 NNTNTTATTGGAC--TTTNTATATNGTNTNTNGNNATTGTNTTTTTTNGTANTTNTTTNG 538 * * * * * ** * * * * * * * * * * * * consensus_6922#0 CGCCGTACTGGGTGTTCATGCACTACGTCTCCCCGTACAAGTACGCCCTCGACGCCCTCC 1258 consensus_6922#1 GNGTNTTNTAGATNNTTNTCNTTNTNNTNNNTNATTGTTNGTTTTTTNTTN--------- 589 * * * * * * * * ** * consensus_6922#0 TCGCCAACGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCG 1318 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGC 1378 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGG 1438 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 TGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGC 1498 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 TCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACG 1558 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 AAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAA 1618 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GGTGGTGATCGAGTTAATTAACTGGTAATTAAGCTGCTGCTGCTGCTATACTGATAAGTG 1678 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 ATGATGTGTATATTTTATGAACATAAAAAAACGAGCCTTTTATATGTGTAATGATGAGTG 1738 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 GTTGATAGTGCGATCTTGACTTGAAAATCACGATCG 1774 consensus_6922#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||