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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1397 fasta sequence
[TTTTTTTTTTTTTTTTATTCAAAATTTCTATGGTTATCCGATATCACCTTTTGTATATGAGATAAAAAAAAATTGTAAACTACTCCAAGGCTTCCACCAGGATAGGGGTTTCTAGTTTACATTTTTGGAGGAATATCCAATGAAAACCATCGAATGAATGAAAACCGAAACTGAATTTTTTTCTAAATTCATGGAAAATTTACTAGAGATAAGTATAGGTGTGAACTACATTTCCACCAAATCTCAAGTTCAAATCCAGCTTCCTACTATTCACCAAAATTTTGTCTTCTTTTCCTTCCAAATAAAGTTGAGTTTAGACAGAGAGATTTGAAGGGAATGTAGTCCATGCTTACACATATTTCTAGTAATTTTTTCAATAATTTAGAAAACTTTTAGTTCCGATTTTCATAGGTTTTCGCTTTTTCGCCACAGATATCCCTGTTTGTTTTCTCAACAAGGGATACATCTTACAAACCTAAAAGAAGGGAATAAAGGTAGCTATGAATTCACTACGGAGTGGAAAAAAAGCATCGATTTGATTTGGAACCAAAAAAAAAAAGCAATAGCGCCGCCCTGTTGCCAGGTTCTTAACAGAAATTTCACTTGAGGAAAGTACAACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTAGGTGGGATGGCAAATGTTGGAATCACTGGGACAAGCAAAGATCCCACAATCCAGCCACCCACAAAAACTCCAAACCCTGTCATAGACG-CCCTGGAAAGATTTTTCATCTTTTCATTGAGGAAATATATGCATGAGACGAGTGATAGTGCAAGCTGGAAAGTAGGCCCAGTCTCAGCGGACGTTACAATGCTCCACCCAGCAATAAAAGCAAAAAGAGCAAGTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCATTGCCTTAAACCATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATTTTGGATTTCTTACGGTGTGAGTAGCTTTTCATTATTATTTTTTCATAAGCACCTTCAATAGCCTCTTCGGTCTCTTCATGCCCAGCATATTGCTTAAGAAGAAAATTCCTTGCACTCCTGATCTCTTCTTCGGATGCATCATGATCAACACCAAGAATCTTGTAGGGGTCCCATGCTTGCTGTCTTGGGAACAACGGAGCATGCTCATCACCGTAGCCACCGGCGCCGATCGAGAGGCTCGCAGAGAGCCGCGGACGCGGGAGCGACGCGCGCCCCCGTCCGGCCGCCACGCCACCAGCCTCCGCCCATCCCAGGCGGTGCGGCGGGCGCCGGAGCGGGCGGGCGAGGAAGGCCGCCTGGCCGAAGGCCACGGCCGCCTGCTGCATCTCCGG]
[+] EMBL CA762391 [TTTTTTTTTTTTTTTTATTCAAAATTTCTATGGTTATCCGATATCACCTTTTGTATATGAGATAAAAAAAAATTGTAAACTACTCCAAGGCTTCCACCAGGATAGGGGTTTCTAGTTTACATTTTTGGAGGAATATCCAATGAAAACCATCGAATGAATGAAAACCGAAACTGAATTTTTTTCTAAATTCATGGAAAATTTACTAGAGATAAGTATAGGTGTGAACTACATTTCCACCAAATCTCAAGTTCAAATCCAGCTTCCTACTATTCACCAAAATTTTGTCTTCTTTTCCTTCCAAATAAAGTTGAGTTTAGACAGAGAGATTTGAAGGGAATGTAGTCCATGCTTACACATATTTCTAGTAATTTTTTCAATAATTTAGAAAACTTTTAGTTCCGATTTTCATAGGTTTTCGCTTTTTCGCCACAGATATCCCTGTTTGTTTTCTCAACAAGGGATACATCTTACAAACCTAAAAGAAGGGAATAAAGGTAGCTATGAATTCACTACGGAGTGGAAAAAAAGCATCGATTTGATTTGGAACCAAAAAAAAAAAGCAATAGCGCCGCCCTGTTGCCAGGTTCTTAACAGAAATTTCACTTGAGGAAAGTACAACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTAGGTGGGA ]
[-] EMBL AK062863 [ CATCGATTTGATTGGGAACC AAAAAAAAAAGCAATAGCGCCGCCCTGTTGCCAGGTTCTTAACAGAAATTTCACTTGAGGAAAGTACAACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTAGGTGGGATGGCAAATGTTGGAATCACTGGGACAAGCAAAGATCCCACAATCCAGCCACCCACAAAAACTCCAAACCCTGTCATAGACG CCCTGGAAAGATTTTTCATCTTTTCATTGAGGAAATATATGCATGAGACGAGTGATAGTGCAAGCTGGAAAGTAGGCCCAGTCTCAGCGGACGTTACAATGCTCCACCCAGCAATAAAAGCAAAAAGAGCAAGTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCATTGCCTTAAACCATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATT ]
[-] EMBL BF430628 [ CCGCCAGAGCTCCGAACCCTGTCATAGACGCCCCTGGAAAGATTTTTCATCTTTTCATTGAGGAAATATATGCATGAGGCGAGTGATAGCGCAAGCTGGAAAGTAGGCCCAGTCTCAGCGGATGTTGCAATGCTCCGCCCAGCAATAAAAGCAGAAAGAGCAAGTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCATTGCCTTAAGCCATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATTTTGGATTTCTTACGGTGTGAGTAGCTTTTCATTATTATTTTTTCATAAGCACCTTCAATAGCCTCTTCGGTCTCTTCATGCCCAGCATATTGCTTAAGAAGAAAATTCCTTGCACTCCTGATCTCTTCTTCGGATGCATCATGATCAACACCAAGAATCTTGTAGGGGTCCCATGCTTGCTGTCTTGGGAACAACGGAGCATGCTCATCACCGTAGCCACCGGCGCCGATCGAGAGGCTCGCAGAGAGCCGCGGACGCGGGAGCGACGCGCGCCCCCGTCCGGCCGCCACGCCACCAGCCTCCGCCCATCCCAGGCGGTGCGGCGGGCGCCGGAGCGGGCGGGCGAGGAAGGCCGCCTGGCCGAAGGCCACGGCCGCCTGCTGCATCTCCGG]
consensusID : consensus_6926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[TTACGGGGAAAAAAGCTTCGATTTGANTTGGAACCAAAAAAAANNAGCAATAGCATCCGGCCCTGTTGNCNGGTTCTTACCNGAAATTTCTCTTGAGGAAAGTNCNGACNCAAGAGCAANGNNACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTNGGTGGCATGGCAAATGTTGGAATCACTGGGACAAGCNAAGATTCCNCAATATCAGGCCANNCACANNACCTNCTNNCCCTGTCATNNACGCACTGGAAAGNTNTTTCATCTTTTCATTGAGGAAATATATGCATNAGACGAGTGATAGCGCNAGCTGGAAAGTAGGNCCNGTCTCATCGNATGNTACNATGCTCCACCCAGCAATAAAAGCANANAGAGCAAGTCTTCTTGGAATANTCTCCNNTGATGGCGCNTCAAAGAACCCAAGCAGTTGCCNTNAGCCATNATGGGGATTCC]
[-] EMBL CA767277 [TTACGGGGAAAAAAGCTTCGATTTGANTTGGAACCAAAAAAAANNAGCAATAGCATCCGGCCCTGTTGNCNGGTTCTTACCNGAAATTTCTCTTGAGGAAAGTNCNGACNCAAGAGCAANGNNACATAAGCCACAAGAGAAGAAAGGAGCTCGATGGACCAAGTNGGTGGCATGGCAAATGTTGGAATCACTGGGACAAGCNAAGATTCCNCAATATCAGGCCANNCACANNACCTNCTNNCCCTGTCATNNACGCACTGGAAAGNTNTTTCATCTTTTCATTGAGGAAATATATGCATNAGACGAGTGATAGCGCNAGCTGGAAAGTAGGNCCNGTCTCATCGNATGNTACNATGCTCCACCCAGCAATAAAAGCANANAGAGCAAGTCTTCTTGGAATANTCTCCNNTGATGGCGCNTCAAAGAACCCAAGCAGTTGCCNTNAGCCATNATGGGGATTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6926#0 TTTTTTTTTTTTTTTTATTCAAAATTTCTATGGTTATCCGATATCACCTTTTGTATATGA 60
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 GATAAAAAAAAATTGTAAACTACTCCAAGGCTTCCACCAGGATAGGGGTTTCTAGTTTAC 120
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 ATTTTTGGAGGAATATCCAATGAAAACCATCGAATGAATGAAAACCGAAACTGAATTTTT 180
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 TTCTAAATTCATGGAAAATTTACTAGAGATAAGTATAGGTGTGAACTACATTTCCACCAA 240
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 ATCTCAAGTTCAAATCCAGCTTCCTACTATTCACCAAAATTTTGTCTTCTTTTCCTTCCA 300
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 AATAAAGTTGAGTTTAGACAGAGAGATTTGAAGGGAATGTAGTCCATGCTTACACATATT 360
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 TCTAGTAATTTTTTCAATAATTTAGAAAACTTTTAGTTCCGATTTTCATAGGTTTTCGCT 420
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 TTTTCGCCACAGATATCCCTGTTTGTTTTCTCAACAAGGGATACATCTTACAAACCTAAA 480
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 AGAAGGGAATAAAGGTAGCTATGAATTCACTACGGAGTGGAAAAAAAGCATCGATTTGAT 540
consensus_6926#1 -----------------------------TTACGGGG----AAAAAAGCTTCGATTTGAN 27
***** * ******** *********
consensus_6926#0 TTGGAACCAAAAAAAAAAAGCAATAGCGCC--GCCCTGTTGCCAGGTTCTTAACAGAAAT 598
consensus_6926#1 TTGGAACCAAAAAAAANNAGCAATAGCATCCGGCCCTGTTGNCNGGTTCTTACCNGAAAT 87
**************** ********* * ********* * ******** * *****
consensus_6926#0 TTCACTTGAGGAAAGTACA-ACCCAAGAACAAGAAAACATAAGCCACAAGAGAAGAAAGG 657
consensus_6926#1 TTCTCTTGAGGAAAGTNCNGACNCAAGAGCAANGNNACATAAGCCACAAGAGAAGAAAGG 147
*** ************ * ** ***** *** ************************
consensus_6926#0 AGCTCGATGGACCAAGTAGGTGGGATGGCAAATGTTGGAATCACTGGGACAAGCAAAGAT 717
consensus_6926#1 AGCTCGATGGACCAAGTNGGTGGCATGGCAAATGTTGGAATCACTGGGACAAGCNAAGAT 207
***************** ***** ****************************** *****
consensus_6926#0 CCCACAAT--CCAGCCACCCACAAAAACTCCAAACCCTGTCATAGACGCCCTGGAAAGAT 775
consensus_6926#1 TCCNCAATATCAGGCCANNCACANNACCTNCTNNCCCTGTCATNNACGCACTGGAAAGNT 267
** **** * **** **** * ** * ********* **** ******** *
consensus_6926#0 TTTTCATCTTTTCATTGAGGAAATATATGCATGAGACGAGTGATAGTGCAAGCTGGAAAG 835
consensus_6926#1 NTTTCATCTTTTCATTGAGGAAATATATGCATNAGACGAGTGATAGCGCNAGCTGGAAAG 327
******************************* ************* ** **********
consensus_6926#0 TAGGCCCAGTCTCAGCGGACGTTACAATGCTCCACCCAGCAATAAAAGCAAAAAGAGCAA 895
consensus_6926#1 TAGGNCCNGTCTCATCGNATGNTACNATGCTCCACCCAGCAATAAAAGCANANAGAGCAA 387
**** ** ****** ** * * *** ************************ * *******
consensus_6926#0 GTCTTCTTGAAATAATCTCCGCTGATGGCACCTCAAAGAACCCAAGCA-TTGCCTTAAAC 954
consensus_6926#1 GTCTTCTTGGAATANTCTCCNNTGATGGCGCNTCAAAGAACCCAAGCAGTTGCCNTNAGC 447
********* **** ***** ******* * **************** ***** * * *
consensus_6926#0 CATGATGGGGATTCCTCGACTTGCTTTTGTATTTTGCTTTTCAGATTAATTTTGGATTTC 1014
consensus_6926#1 CATNATGGGGATTCC--------------------------------------------- 462
*** ***********
consensus_6926#0 TTACGGTGTGAGTAGCTTTTCATTATTATTTTTTCATAAGCACCTTCAATAGCCTCTTCG 1074
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 GTCTCTTCATGCCCAGCATATTGCTTAAGAAGAAAATTCCTTGCACTCCTGATCTCTTCT 1134
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 TCGGATGCATCATGATCAACACCAAGAATCTTGTAGGGGTCCCATGCTTGCTGTCTTGGG 1194
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 AACAACGGAGCATGCTCATCACCGTAGCCACCGGCGCCGATCGAGAGGCTCGCAGAGAGC 1254
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 CGCGGACGCGGGAGCGACGCGCGCCCCCGTCCGGCCGCCACGCCACCAGCCTCCGCCCAT 1314
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 CCCAGGCGGTGCGGCGGGCGCCGGAGCGGGCGGGCGAGGAAGGCCGCCTGGCCGAAGGCC 1374
consensus_6926#1 ------------------------------------------------------------
consensus_6926#0 ACGGCCGCCTGCTGCATCTCCGG 1397
consensus_6926#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||