These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1187 fasta sequence [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACT-TATTTTGGGCGACAATTTGATCTA-GGACAGTTTGAACGTTTCCGGC-GGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAA-GAAAGAACTATATTGAGCAGTTT-ATGGGTTG-AAGAGAA-CCTA-TA-TAAGC-AAAGAGTGT-GGGTTCGA-GGATC-ACGTCCGG--AGGAAG--AAGCTATA-TTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAAATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGTATGGTTGTTTATGAAATACCGTCATCTGGAAAGCTTTCAGCGATAGCTCAATGTGGATGTTCAGGTCAGGAAACGGCATTGTCAGAAGAAACAAAGTCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCATCCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATGTTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTCATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGTACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATATGTTGTTTCACACTCACCAGAAAAGGGCAGGTAACTTGTTGGGAATATTTTTTTAGGTGACCATCATCGTCAGGTCAATAACTTGCTTGCAAGATGAAAGTAACATGATATCGATATCTATATATTTTCGCACAACCTGATGATGAGGCAAA] [+] EMBL AK108682 [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACT TATTTTGGGCGACAATTTGATCTA GGACAGTTTGAACGTTTCCGGC GGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAA GAAAGAACTATATTGAGCAGTTT ATGGGTTG AAGAGAA CCTA TA TAAGC AAAGAGTGT GGGTTCGA GGATC ACGTCCGG AGGAAG AAGCTATA TTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAAATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGTATGGTTGTTTATGAAATACCGTCATCTGGAAAGCTTTCAGCGATAGCTCAATGTGGATGTTCAGGTCAGGAAACGGCATTGTCAGAAGAAACAAAGTCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCATCCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATGTTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTCATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGTACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATATGTTGTTTCACACTCACCAGAAAAGGGCAGGTAACTTGTTGGGAATATTTTTTTAGGTGACCATCATCGTCAGGTCAATAACTTGCTTGCAAGATGAAAGTAACATGATATCGATATCTATATATTTTCGCACAACCTGATGATGAGGCAAA] [+] EMBL AU162657 [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTNTATTTTGGGCGACAATTTGATCTAGGGACAGTTTGAACGTTTCCGGCGGGATATTTCACCATTCAACTTATAGGGNTTTGCTTGCCCACAAAGGAAAGAACTATATTGAGCAGTTTAATGGGTTGAAAGAGAANCCTATTANAAAGCAAAAGAGTGTGGGGTTCGAGGGATCAACGTCCGGGAAGAAAGGAAAGCTATATTTTCAGTTTACnaa ] [+] EMBL AU056149 [ GAAACGGCATTGTCAGAAGAAACAAAGTCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCATCCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATGTTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTCATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGTACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATAaaaaaaa ] consensusID : consensus_6932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 924 fasta sequence [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGGTAATAGGCTAATAGCTGCTTGCAAATTGCTCATTTTTGCTTAGATGTGGTAAAGGTTTGACACAACTTCATAAGTCTGAATCTATATGGCCTTATCAGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTTATTTTGGGCGACAATTTGATCTAGGACAGGTAGACCAGAAGTATTTTCCTTCTGACATATATGGTTGTTCATGCTTCATAGCTGTCTTGCTGATTGCCACTAGTGCTACTCCAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAGGTTGGTCTTAACCCCCTTAATATTTCTGTCTATCGTACAATGAGACAAATTATCTTGATCTTGAATCTGATCGTGCTAACAGAACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAGAAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAGATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGT] [+] EMBL AK111387 [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGGTAATAGGCTAATAGCTGCTTGCAAATTGCTCATTTTTGCTTAGATGTGGTAAAGGTTTGACACAACTTCATAAGTCTGAATCTATATGGCCTTATCAGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTTATTTTGGGCGACAATTTGATCTAGGACAGGTAGACCAGAAGTATTTTCCTTCTGACATATATGGTTGTTCATGCTTCATAGCTGTCTTGCTGATTGCCACTAGTGCTACTCCAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAGGTTGGTCTTAACCCCCTTAATATTTCTGTCTATCGTACAATGAGACAAATTATCTTGATCTTGAATCTGATCGTGCTAACAGAACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAGAAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAGATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6932#0 ------------------------------------------------------------ consensus_6932#1 CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATG 60 consensus_6932#0 ------------------------------------------------------------ consensus_6932#1 TACAGGGTAATAGGCTAATAGCTGCTTGCAAATTGCTCATTTTTGCTTAGATGTGGTAAA 120 consensus_6932#0 ------------------------------------------------------------ consensus_6932#1 GGTTTGACACAACTTCATAAGTCTGAATCTATATGGCCTTATCAGTTTGCAGGCTTTGAT 180 consensus_6932#0 CAACTTGAGGCATTAAAATACAATGATCAGCCACG----CCAAGATTATGGGATAGAAGT 56 consensus_6932#1 CCTTTTGAGAGATCAACTTATTTTGGGCGACAATTTGATCTAGGACAGGTAGACCAGAAG 240 * ***** ** ** ** ** * * * * * ** ** * consensus_6932#0 CATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTTATTTTGGGCGACAATT 116 consensus_6932#1 TATTTTCCTTCTGACATATATGGTTGTTCATGCTTCATAGCTGTCTTGCTGATTGCCACT 300 ** * * * ** * * * * ** ** * ** * * * * consensus_6932#0 TGATCTAGGACAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTT 176 consensus_6932#1 AGTGCTACTCCAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTT 360 * *** ************************************************** consensus_6932#0 GCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAG----------- 225 consensus_6932#1 GCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAGGTTGGTCTTAA 420 ************************************************* consensus_6932#0 ------------------------------------------------------------ consensus_6932#1 CCCCCTTAATATTTCTGTCTATCGTACAATGAGACAAATTATCTTGATCTTGAATCTGAT 480 consensus_6932#0 -----------AACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAG 274 consensus_6932#1 CGTGCTAACAGAACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAG 540 ************************************************* consensus_6932#0 AAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGT 334 consensus_6932#1 AAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGT 600 ************************************************************ consensus_6932#0 TAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGAC 394 consensus_6932#1 TAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGAC 660 ************************************************************ consensus_6932#0 CGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATT 454 consensus_6932#1 CGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATT 720 ************************************************************ consensus_6932#0 ATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAA 514 consensus_6932#1 ATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAA 780 ************************************************************ consensus_6932#0 AAAAAATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGA 574 consensus_6932#1 AAAAGATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGA 840 **** ******************************************************* consensus_6932#0 ATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCT 634 consensus_6932#1 ATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCT 900 ************************************************************ consensus_6932#0 ATTGTACATAAGTTTGGCGGCTGTATGGTTGTTTATGAAATACCGTCATCTGGAAAGCTT 694 consensus_6932#1 ATTGTACATAAGTTTGGCGGCTGT------------------------------------ 924 ************************ consensus_6932#0 TCAGCGATAGCTCAATGTGGATGTTCAGGTCAGGAAACGGCATTGTCAGAAGAAACAAAG 754 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 TCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCAT 814 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 CCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATG 874 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 TTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTC 934 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 ATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGT 994 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 ACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATATGTTGTTTCACACTCACCA 1054 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 GAAAAGGGCAGGTAACTTGTTGGGAATATTTTTTTAGGTGACCATCATCGTCAGGTCAAT 1114 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 AACTTGCTTGCAAGATGAAAGTAACATGATATCGATATCTATATATTTTCGCACAACCTG 1174 consensus_6932#1 ------------------------------------------------------------ consensus_6932#0 ATGATGAGGCAAA 1187 consensus_6932#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||