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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence
[AGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTT-CCTTTTACTTATGGCATCTAACCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTAGGTCAATACATGGATATCCATTTACCCAAGCTAGCTGAACTAATAGTCAGATGAGTTCATTTTTAGTTGATTCAGTTGAACTAAAGTGGGTCAATGGGTACCTATATATTGACCCACCATCCCTATTTAGCTATTTTTTATAGACTGGTTGCGCTCGAGTTGGAACTCTGAACCTTTTCATAGTTGATGTATGTTTACTCACTGAAGTGAACATGGCCGCAC]
[+] EMBL CF307332 [AGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTT CCTTTTACTTATGGCATCTAAC ]
[+] EMBL CB644987 [ TATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTAGGTCAATACATGGATATCCATTTACCCAAGCTAGCTGAACTAATAGTCAGATGAGTTCATTTTTAGTTGATTCAGTTGAACTAAAGTGGGTCAATGGGTACCTATATATTGACCCACCATCCCTATTTAGCTATTTTTTATAGACTGGTTGCGCTCGAGTTGGAACTCTGAACCTTTTCATAGTTGATGTATGTTTACTCACTGAAGTGAACATGGCCGCAC]
consensusID : consensus_6941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[TCAAGTTGTCAGATGGAAAAGTAGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGAGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGGTGATTAACAATGAATTTGTGCTGGTATCTACCTATTCAGTTTGAAATTAACAGTCTCTAGTTGTTTTTCAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTTAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTANGTCAATAC]
[+] EMBL CB620015 [TCAAGTTGTCAGATGGAAAAGTAGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGAGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGGTGATTAACAATGAATTTGTGCTGGTATCTACCTATTCAGTTTGAAATTAACAGTCTCTAGTTGTTTTTCAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTTAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTANGTCAATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6941#0 ----------------------AGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGC 38
consensus_6941#1 TCAAGTTGTCAGATGGAAAAGTAGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGC 60
**************************************
consensus_6941#0 TGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAG 98
consensus_6941#1 TGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAG 120
************************************************************
consensus_6941#0 GTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAG--- 155
consensus_6941#1 GTGGATGGGTCCTGCGAGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGGTG 180
**************** ****************************************
consensus_6941#0 ------------------------------------------------------------
consensus_6941#1 ATTAACAATGAATTTGTGCTGGTATCTACCTATTCAGTTTGAAATTAACAGTCTCTAGTT 240
consensus_6941#0 ---------ATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACT 206
consensus_6941#1 GTTTTTCAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACT 300
***************************************************
consensus_6941#0 TACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAG 266
consensus_6941#1 TACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAG 360
************************************************************
consensus_6941#0 ACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGA 326
consensus_6941#1 ACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTTAACATCTGA 420
************************************************** *********
consensus_6941#0 ACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATG 386
consensus_6941#1 ACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATG 480
************************************************************
consensus_6941#0 GGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGA 446
consensus_6941#1 GGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGA 540
************************************************************
consensus_6941#0 AAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCT 506
consensus_6941#1 AAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCT 600
************************************************************
consensus_6941#0 GCTCATTAGAGATTGCCCTCTTCC-TTTTACTTATGGCATCTAACCTGTTACAAGAGGTC 565
consensus_6941#1 GCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTC 660
************************ ************ ** ***************
consensus_6941#0 CGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTAGGTCAA 625
consensus_6941#1 CGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTANGTCAA 720
****************************************************** *****
consensus_6941#0 TACATGGATATCCATTTACCCAAGCTAGCTGAACTAATAGTCAGATGAGTTCATTTTTAG 685
consensus_6941#1 TAC--------------------------------------------------------- 723
***
consensus_6941#0 TTGATTCAGTTGAACTAAAGTGGGTCAATGGGTACCTATATATTGACCCACCATCCCTAT 745
consensus_6941#1 ------------------------------------------------------------
consensus_6941#0 TTAGCTATTTTTTATAGACTGGTTGCGCTCGAGTTGGAACTCTGAACCTTTTCATAGTTG 805
consensus_6941#1 ------------------------------------------------------------
consensus_6941#0 ATGTATGTTTACTCACTGAAGTGAACATGGCCGCAC 841
consensus_6941#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||