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Oryza sativa
cluster # 6944 cluster # 6944       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6944#0 length = 1649 sequences # 1  
consensus_6944#1 length = 1118 sequences # 1  
consensus_6944#2 length = 842 sequences # 1  
consensus_6944#3 length = 445 sequences # 1  

consensusID : consensus_6944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1649
fasta sequence
                              [TCCAATCCAACTCGTCGTCGTACGTCTCCCTCCTCTCGCACCGAACCAAATCCCCATCGCGCCGCGGCGGTGGCGAGGCGTGCGTACGTACGTGATGCCGGGACCGGGGGCGCACCTGCTGTACGCGCTGTCGGGCGGGGCGGCGCTGTCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCCGCACCACTGCGCCGTCTACGCCGCCAACGCCTTCCTCGGCCCGGACCTCGGCTCCTTCGCCGAGTGGCTCGCCTCGTTCCTCCCCTCCTCGTCCTCGGCCGCCGCCGCCGTGGGGGACCTCGCCATGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACTTGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTTATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAGCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCCATAGGGTACTATGAATGGGACTCGATGATGCTAATGCTGTTATGCTTATCGTCATCTCTCATGGAGATCTTTAGGGCCTTCTCAAGATGTGACACAACTTGCTCCATGGACGGACGCTGCTTCTTGTGTCCAGTGCATGAAAGGGCAAGCTTCAAACTGAGATCAAATGCCTCTGTCGAGTACTCTCCGTTCAGCCTAGGATCAGCAAACTCCAACACGTTGCCTTCTCTGATGAGCATGGAAGCCTGAGGAACGAAGGAGTTGTAGGAGCACCATACCAAAGCTGTAGACATCCCCTGCAGCATTTACCTTGTGATTGTGGCGATACTCTGGATCGACGTATCCAAATGTTCCTCTAACTTCGGAGCTTACGTGTGATACTCCTATGTCAATGACTCTTGACAGTCCAAAATCCGACAATTTGGGTTCCATATCAACCCCAAGAAGTATATTGGTTGGCTGTAACGGCACAAATGAGTTTGACATTGCTTAAATTTGCAGATGTACTAGAGTTTTCCAAATCATGCAACCAACCTTGACATCACGGTGAACAATGCAGCCTTCAGGATATATGTGAAGGAACCAAAGGCCACAGGCGCTGCCAAGTGCAATCTGCAGCCTCTGAATCCATGACAGGTTACCGTTGATACATAACTCATATACAAGAAAACATTCCTCCTGCCCATCGCAATAACCTCTTAGTGACACAAGGTTTGGATGTCTCACATGTGAGAGGCTTGTAACTTCCCTTAGGAAAGTTTCTGCATGCTCGTTCTTAACGATGTGCTTTACAGCAACAGGCCAGCCATTTGCAAGCACTCCTTTGTACACTTTCCCTGAAAAATCACATAATAAAGAAGATACATCCAACTTTCAG]

[+] EMBL AK107498             [TCCAATCCAACTCGTCGTCGTACGTCTCCCTCCTCTCGCACCGAACCAAATCCCCATCGCGCCGCGGCGGTGGCGAGGCGTGCGTACGTACGTGATGCCGGGACCGGGGGCGCACCTGCTGTACGCGCTGTCGGGCGGGGCGGCGCTGTCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCCGCACCACTGCGCCGTCTACGCCGCCAACGCCTTCCTCGGCCCGGACCTCGGCTCCTTCGCCGAGTGGCTCGCCTCGTTCCTCCCCTCCTCGTCCTCGGCCGCCGCCGCCGTGGGGGACCTCGCCATGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACTTGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTTATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAGCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCCATAGGGTACTATGAATGGGACTCGATGATGCTAATGCTGTTATGCTTATCGTCATCTCTCATGGAGATCTTTAGGGCCTTCTCAAGATGTGACACAACTTGCTCCATGGACGGACGCTGCTTCTTGTGTCCAGTGCATGAAAGGGCAAGCTTCAAACTGAGATCAAATGCCTCTGTCGAGTACTCTCCGTTCAGCCTAGGATCAGCAAACTCCAACACGTTGCCTTCTCTGATGAGCATGGAAGCCTGAGGAACGAAGGAGTTGTAGGAGCACCATACCAAAGCTGTAGACATCCCCTGCAGCATTTACCTTGTGATTGTGGCGATACTCTGGATCGACGTATCCAAATGTTCCTCTAACTTCGGAGCTTACGTGTGATACTCCTATGTCAATGACTCTTGACAGTCCAAAATCCGACAATTTGGGTTCCATATCAACCCCAAGAAGTATATTGGTTGGCTGTAACGGCACAAATGAGTTTGACATTGCTTAAATTTGCAGATGTACTAGAGTTTTCCAAATCATGCAACCAACCTTGACATCACGGTGAACAATGCAGCCTTCAGGATATATGTGAAGGAACCAAAGGCCACAGGCGCTGCCAAGTGCAATCTGCAGCCTCTGAATCCATGACAGGTTACCGTTGATACATAACTCATATACAAGAAAACATTCCTCCTGCCCATCGCAATAACCTCTTAGTGACACAAGGTTTGGATGTCTCACATGTGAGAGGCTTGTAACTTCCCTTAGGAAAGTTTCTGCATGCTCGTTCTTAACGATGTGCTTTACAGCAACAGGCCAGCCATTTGCAAGCACTCCTTTGTACACTTTCCCTGAAAAATCACATAATAAAGAAGATACATCCAACTTTCAG]


>consensus_6944#0 TCCAATCCAACTCGTCGTCGTACGTCTCCCTCCTCTCGCACCGAACCAAATCCCCATCGC GCCGCGGCGGTGGCGAGGCGTGCGTACGTACGTGATGCCGGGACCGGGGGCGCACCTGCT GTACGCGCTGTCGGGCGGGGCGGCGCTGTCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCC GCACCACTGCGCCGTCTACGCCGCCAACGCCTTCCTCGGCCCGGACCTCGGCTCCTTCGC CGAGTGGCTCGCCTCGTTCCTCCCCTCCTCGTCCTCGGCCGCCGCCGCCGTGGGGGACCT CGCCATGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGC CTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCTC TCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCCCA TTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACTTGGATTCT GAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTTATTGTAGG CCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAGCATGAAAA ATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCTATCTTGTA CTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCCATAGGGTA CTATGAATGGGACTCGATGATGCTAATGCTGTTATGCTTATCGTCATCTCTCATGGAGAT CTTTAGGGCCTTCTCAAGATGTGACACAACTTGCTCCATGGACGGACGCTGCTTCTTGTG TCCAGTGCATGAAAGGGCAAGCTTCAAACTGAGATCAAATGCCTCTGTCGAGTACTCTCC GTTCAGCCTAGGATCAGCAAACTCCAACACGTTGCCTTCTCTGATGAGCATGGAAGCCTG AGGAACGAAGGAGTTGTAGGAGCACCATACCAAAGCTGTAGACATCCCCTGCAGCATTTA CCTTGTGATTGTGGCGATACTCTGGATCGACGTATCCAAATGTTCCTCTAACTTCGGAGC TTACGTGTGATACTCCTATGTCAATGACTCTTGACAGTCCAAAATCCGACAATTTGGGTT CCATATCAACCCCAAGAAGTATATTGGTTGGCTGTAACGGCACAAATGAGTTTGACATTG CTTAAATTTGCAGATGTACTAGAGTTTTCCAAATCATGCAACCAACCTTGACATCACGGT GAACAATGCAGCCTTCAGGATATATGTGAAGGAACCAAAGGCCACAGGCGCTGCCAAGTG CAATCTGCAGCCTCTGAATCCATGACAGGTTACCGTTGATACATAACTCATATACAAGAA AACATTCCTCCTGCCCATCGCAATAACCTCTTAGTGACACAAGGTTTGGATGTCTCACAT GTGAGAGGCTTGTAACTTCCCTTAGGAAAGTTTCTGCATGCTCGTTCTTAACGATGTGCT TTACAGCAACAGGCCAGCCATTTGCAAGCACTCCTTTGTACACTTTCCCTGAAAAATCAC ATAATAAAGAAGATACATCCAACTTTCAG



consensusID : consensus_6944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1118
fasta sequence
                              [TACGTGATGCCGGGACCGGGGGCGCACCTGCTGTACGCGCTGTCGGGCGGGGCGGCGCTGTCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCCGCACCACTGCGCCGTCTACGCCGCCAACGCCTTCCTCGGCCCGGACCTCGGCTCCTTCGCCGAGTGGCTCGCCTCGTTCCTCCCCTCCTCGTCCTCGGCCGCCGCCGCCGTGGGGGACCTCGCCATGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACTTGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTTATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAGCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCCATAGGTGAAGAGGCTGATCTTGGAGTGATAATATTTGTTGCCATTTACCTTTTTCTCCCCCATGGCTTGTGTGCCCTGTCAATGAACCAGAATGATTATGCTGAACTGGAAGGGATCCAACTTCGATAATGTGCCATATGGTGGTGTACTTTTATCCTAATCTACAAAGAACATCATTTTTTGAAGTCTGCTCGCTCCTCCATGTTGTAATCATATTTATTTTCTAATAATAATTGGCTAATTGCCAGGGATTTATGTTTTCTCTAGTGCAAAAATACTTCTAGCGAAGACTTAGGAGTTAGGATTATGGAGTTCAGGATGATACTGGCACTGTATTATCAGTTGTGATAGCAATAAACTTCTATTGGCAGTGGTGTTCAAAACATCCCAGCAAGTTCTGTTTTCCACTTTAGAATATACATTTCAAAGTTATG]

[+] EMBL AK064701             [TACGTGATGCCGGGACCGGGGGCGCACCTGCTGTACGCGCTGTCGGGCGGGGCGGCGCTGTCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCCGCACCACTGCGCCGTCTACGCCGCCAACGCCTTCCTCGGCCCGGACCTCGGCTCCTTCGCCGAGTGGCTCGCCTCGTTCCTCCCCTCCTCGTCCTCGGCCGCCGCCGCCGTGGGGGACCTCGCCATGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACTTGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTTATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAGCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCCATAGGTGAAGAGGCTGATCTTGGAGTGATAATATTTGTTGCCATTTACCTTTTTCTCCCCCATGGCTTGTGTGCCCTGTCAATGAACCAGAATGATTATGCTGAACTGGAAGGGATCCAACTTCGATAATGTGCCATATGGTGGTGTACTTTTATCCTAATCTACAAAGAACATCATTTTTTGAAGTCTGCTCGCTCCTCCATGTTGTAATCATATTTATTTTCTAATAATAATTGGCTAATTGCCAGGGATTTATGTTTTCTCTAGTGCAAAAATACTTCTAGCGAAGACTTAGGAGTTAGGATTATGGAGTTCAGGATGATACTGGCACTGTATTATCAGTTGTGATAGCAATAAACTTCTATTGGCAGTGGTGTTCAAAACATCCCAGCAAGTTCTGTTTTCCACTTTAGAATATACATTTCAAAGTTATG]


>consensus_6944#1 TACGTGATGCCGGGACCGGGGGCGCACCTGCTGTACGCGCTGTCGGGCGGGGCGGCGCTG TCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCCGCACCACTGCGCCGTCTACGCCGCCAAC GCCTTCCTCGGCCCGGACCTCGGCTCCTTCGCCGAGTGGCTCGCCTCGTTCCTCCCCTCC TCGTCCTCGGCCGCCGCCGCCGTGGGGGACCTCGCCATGGGCGTCGTCCACCACCCGTTC TACTACCCGCTCCTCCTCGGCTTCCCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGG CTGCTCCTCGCCGGCGTCCTCGACGAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGC TTCTACCTTATCACGGCAGGCTCGCTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAG AATGGGCACTCTACGATGTATACTTGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCT CCTATCAATTCGGATGCAGTGGTTATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGG TTTGTGTACATTAACAGAGTGAAGCATGAAAAATCAGCCACTCAAAAATCAAACCAATCT TTCTTCCTCATCGTGGTGATAGCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATAC CTGCGAAATCCACCTCAACCAGCCATAGGTGAAGAGGCTGATCTTGGAGTGATAATATTT GTTGCCATTTACCTTTTTCTCCCCCATGGCTTGTGTGCCCTGTCAATGAACCAGAATGAT TATGCTGAACTGGAAGGGATCCAACTTCGATAATGTGCCATATGGTGGTGTACTTTTATC CTAATCTACAAAGAACATCATTTTTTGAAGTCTGCTCGCTCCTCCATGTTGTAATCATAT TTATTTTCTAATAATAATTGGCTAATTGCCAGGGATTTATGTTTTCTCTAGTGCAAAAAT ACTTCTAGCGAAGACTTAGGAGTTAGGATTATGGAGTTCAGGATGATACTGGCACTGTAT TATCAGTTGTGATAGCAATAAACTTCTATTGGCAGTGGTGTTCAAAACATCCCAGCAAGT TCTGTTTTCCACTTTAGAATATACATTTCAAAGTTATG



consensusID : consensus_6944#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 842
fasta sequence
                              [GACGAGACAAGGGGGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACTTGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTTATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAGCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCCATAGGTGAAGAGGCTGATCTTGGAGTGATAATATTTGTTGCCATTTACCTTTTTCTCCCCCATGGCTTGTGTGCCCTGTCAATGAACCAGAATGATTATGCTGAACTGGAAGGGATCCAACTTCGATAATGTGCCATATGGGNGGTGTACTTTTATCCTAATCTACAAAGAACATCATTTTTTGAAAGTCTGCTCGCTCCTCCATGGTGGAATCATATTTATTTTCTAATAATAATTGGCTAATTGNCAGGGANTTAATGGTTTCTCTAGTGCAAAAATACTTCTAGCGAAGACTTAAGGAGNTAGGATTATGGGAGTTCAGGATGATACTGGCACTGNATTATCAGNTGNGATAGCAANAA]

[+] EMBL CA764153             [GACGAGACAAGGGGGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACTTGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTTATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAGCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCCATAGGTGAAGAGGCTGATCTTGGAGTGATAATATTTGTTGCCATTTACCTTTTTCTCCCCCATGGCTTGTGTGCCCTGTCAATGAACCAGAATGATTATGCTGAACTGGAAGGGATCCAACTTCGATAATGTGCCATATGGGNGGTGTACTTTTATCCTAATCTACAAAGAACATCATTTTTTGAAAGTCTGCTCGCTCCTCCATGGTGGAATCATATTTATTTTCTAATAATAATTGGCTAATTGNCAGGGANTTAATGGTTTCTCTAGTGCAAAAATACTTCTAGCGAAGACTTAAGGAGNTAGGATTATGGGAGTTCAGGATGATACTGGCACTGNATTATCAGNTGNGATAGCAANAA]


>consensus_6944#2 GACGAGACAAGGGGGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTC CCGCTCGCCTGCCTCTACGCCTGGCTCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGAC GAGCCCTCTCGGGTGGCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCG CTCTCCCATTTCTTTTTGGATCACTTGTTTGAGGAGAATGGGCACTCTACGATGTATACT TGGATTCTGAGCACTGGTTGGTGGGTAGGCCGTGCTCCTATCAATTCGGATGCAGTGGTT ATTGTAGGCCTTCTTTGTATTTGCCTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAAG CATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCTCATCGTGGTGATAGCT ATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCAGCC ATAGGTGAAGAGGCTGATCTTGGAGTGATAATATTTGTTGCCATTTACCTTTTTCTCCCC CATGGCTTGTGTGCCCTGTCAATGAACCAGAATGATTATGCTGAACTGGAAGGGATCCAA CTTCGATAATGTGCCATATGGGNGGTGTACTTTTATCCTAATCTACAAAGAACATCATTT TTTGAAAGTCTGCTCGCTCCTCCATGGTGGAATCATATTTATTTTCTAATAATAATTGGC TAATTGNCAGGGANTTAATGGTTTCTCTAGTGCAAAAATACTTCTAGCGAAGACTTAAGG AGNTAGGATTATGGGAGTTCAGGATGATACTGGCACTGNATTATCAGNTGNGATAGCAAN AA



consensusID : consensus_6944#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence
                              [TTTTTTTTTTCAGTAATTAGTATATTCCGGGGTGNGTTTCTCAAACACAGCTGAATTATGCTCACATAAATGCACGCAAATTGTTTAANCATGTTAGTGGGAAACACTAAGTTGGCAGCCTGAACTCCTGAAGGATGGCCCAGGGTACTATGAATGGGGACTCGATGATGCTAATGCTGTTATGCTTATCGTCATCTCTCAGGGAGATCTTTAGGGCCTTCTCAAGATGTGACACAACTTGCTCCAGGGACGGACGCTGNTTCTGGTGTCCAGGTGCATGAAAGGGCAAGCTTCAAACTGAGATCAAAGGCCTCGTGTCGAGTACTCTCCGTATCAGCCTAGGATCAGCAAACTCCAACACGTTGCCTTCTCTGATGAGCANTGGAAGCCATTCGATCCAATTGACATGGGTTATAGCAGTGTCATGATATGGATGGNTCGTTTC]

[-] EMBL BI807178             [TTTTTTTTTTCAGTAATTAGTATATTCCGGGGTGNGTTTCTCAAACACAGCTGAATTATGCTCACATAAATGCACGCAAATTGTTTAANCATGTTAGTGGGAAACACTAAGTTGGCAGCCTGAACTCCTGAAGGATGGCCCAGGGTACTATGAATGGGGACTCGATGATGCTAATGCTGTTATGCTTATCGTCATCTCTCAGGGAGATCTTTAGGGCCTTCTCAAGATGTGACACAACTTGCTCCAGGGACGGACGCTGNTTCTGGTGTCCAGGTGCATGAAAGGGCAAGCTTCAAACTGAGATCAAAGGCCTCGTGTCGAGTACTCTCCGTATCAGCCTAGGATCAGCAAACTCCAACACGTTGCCTTCTCTGATGAGCANTGGAAGCCATTCGATCCAATTGACATGGGTTATAGCAGTGTCATGATATGGATGGNTCGTTTC]


>consensus_6944#3 TTTTTTTTTTCAGTAATTAGTATATTCCGGGGTGNGTTTCTCAAACACAGCTGAATTATG CTCACATAAATGCACGCAAATTGTTTAANCATGTTAGTGGGAAACACTAAGTTGGCAGCC TGAACTCCTGAAGGATGGCCCAGGGTACTATGAATGGGGACTCGATGATGCTAATGCTGT TATGCTTATCGTCATCTCTCAGGGAGATCTTTAGGGCCTTCTCAAGATGTGACACAACTT GCTCCAGGGACGGACGCTGNTTCTGGTGTCCAGGTGCATGAAAGGGCAAGCTTCAAACTG AGATCAAAGGCCTCGTGTCGAGTACTCTCCGTATCAGCCTAGGATCAGCAAACTCCAACA CGTTGCCTTCTCTGATGAGCANTGGAAGCCATTCGATCCAATTGACATGGGTTATAGCAG TGTCATGATATGGATGGNTCGTTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6944#1      ------------------------------------------------------------
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      TCCAATCCAACTCGTCGTCGTACGTCTCCCTCCTCTCGCACCGAACCAAATCCCCATCGC 60
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      ----------------------------TACGTGATGCCGGGACCGGGGGCGCACCTGCT 32
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      GCCGCGGCGGTGGCGAGGCGTGCGTACGTACGTGATGCCGGGACCGGGGGCGCACCTGCT 120
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      GTACGCGCTGTCGGGCGGGGCGGCGCTGTCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCC 92
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      GTACGCGCTGTCGGGCGGGGCGGCGCTGTCGCGGCTGGCCGGGGCGGCGCGGTTCGGGCC 180
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      GCACCACTGCGCCGTCTACGCCGCCAACGCCTTCCTCGGCCCGGACCTCGGCTCCTTCGC 152
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      GCACCACTGCGCCGTCTACGCCGCCAACGCCTTCCTCGGCCCGGACCTCGGCTCCTTCGC 240
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      CGAGTGGCTCGCCTCGTTCCTCCCCTCCTCGTCCTCGGCCGCCGCCGCCGTGGGGGACCT 212
consensus_6944#2      ----------------------------------------------------GACGAGAC 8
consensus_6944#0      CGAGTGGCTCGCCTCGTTCCTCCCCTCCTCGTCCTCGGCCGCCGCCGCCGTGGGGGACCT 300
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      CGCCATGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGC 272
consensus_6944#2      AAGGGGGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGC 68
consensus_6944#0      CGCCATGGGCGTCGTCCACCACCCGTTCTACTACCCGCTCCTCCTCGGCTTCCCGCTCGC 360
consensus_6944#3      --------------------------------------------------------TTTT 4
                                                                              *   

consensus_6944#1      CTGCCTCTACGCCTGGC-TCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCT 331
consensus_6944#2      CTGCCTCTACGCCTGGC-TCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCT 127
consensus_6944#0      CTGCCTCTACGCCTGGC-TCTCCCGGCGGCTGCTCCTCGCCGGCGTCCTCGACGAGCCCT 419
consensus_6944#3      TTTTTTCAGTAATTAGTATATTCCGGGGTGNGTTTCTCAAACACAGCTGAATTATGCTCA 64
                       *   **      * *  * * **** *   * * ***     *  *        ** * 

consensus_6944#1      CTCGGGTG-GCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCC 390
consensus_6944#2      CTCGGGTG-GCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCC 186
consensus_6944#0      CTCGGGTG-GCACTAAGCAGGAGACAATGCTTCTACCTTATCACGGCAGGCTCGCTCTCC 478
consensus_6944#3      CATAAATGCACGCAAATTGTTTAANCATG---TTAGTGGGAAACACTAAGTTGGCAGCCT 121
                      *     **  * * **       *  ***    **       **   * * * **   * 

consensus_6944#1      CATTTCTTTTTGGATCACTT-GTTTGAGGAGAATGGGCACTCTACGATGT--ATACTTGG 447
consensus_6944#2      CATTTCTTTTTGGATCACTT-GTTTGAGGAGAATGGGCACTCTACGATGT--ATACTTGG 243
consensus_6944#0      CATTTCTTTTTGGATCACTT-GTTTGAGGAGAATGGGCACTCTACGATGT--ATACTTGG 535
consensus_6944#3      GAACTCCTGAAGGATGGCCCAGGGTACTATGAATGGGGACTCGATGATGCTAATGCTGTT 181
                       *  ** *   ****  *   *  *     ******* **** * ****   ** **   

consensus_6944#1      ATTCTGAGCACTGGTTGGTGGGTAGGCCGT---GCTCCTATCAATTCGGATGCAGTGGTT 504
consensus_6944#2      ATTCTGAGCACTGGTTGGTGGGTAGGCCGT---GCTCCTATCAATTCGGATGCAGTGGTT 300
consensus_6944#0      ATTCTGAGCACTGGTTGGTGGGTAGGCCGT---GCTCCTATCAATTCGGATGCAGTGGTT 592
consensus_6944#3      ATGCTTATCGTCATCTCTCAGGGAGATCTTTAGGGCCTTCTCAA----GATGTGACACAA 237
                      ** ** * *      *    ** **  * *   *  * * ****    ****        

consensus_6944#1      ATTGTAGGCCTTCTTTGTATTTGC-CTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAA 563
consensus_6944#2      ATTGTAGGCCTTCTTTGTATTTGC-CTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAA 359
consensus_6944#0      ATTGTAGGCCTTCTTTGTATTTGC-CTCGTGCTGGGGTTTGTGTACATTAACAGAGTGAA 651
consensus_6944#3      CTTGC------TCCAGGGACGGACGCTGNTTCTGGTGTCCAGGTGCATGAA-AGGGC-AA 289
                       ***       **   * *    * **  * **** **    ** *** ** ** *  **

consensus_6944#1      GCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCT--CATCGTGGTGATA 621
consensus_6944#2      GCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCT--CATCGTGGTGATA 417
consensus_6944#0      GCATGAAAAATCAGCCACTCAAAAATCAAACCAATCTTTCTTCCT--CATCGTGGTGATA 709
consensus_6944#3      GCTTCAAACTGAGATCAA--AGGCCTCGTGTCGAGTACTCTCCGTATCAGCCTAGGATCA 347
                      ** * ***       **   *    **    * *    *** * *  ** * * *    *

consensus_6944#1      GCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCA 681
consensus_6944#2      GCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCA 477
consensus_6944#0      GCTATCTTGTACTGTATGTGGTGTGCCACTCAGATATACCTGCGAAATCCACCTCAACCA 769
consensus_6944#3      GCAAACTCCAAC---ACGTTGC---CTTCTCTGATG-AGCANTGGAAGCCATTCGATCCA 400
                      ** * **   **   * ** *    *  *** ***  * *   * ** ***    * ***

consensus_6944#1      GCCATAGG------TGAAGAGGC-----TGATCTTGGAGTGATAATATTTGTTGC-CATT 729
consensus_6944#2      GCCATAGG------TGAAGAGGC-----TGATCTTGGAGTGATAATATTTGTTGC-CATT 525
consensus_6944#0      GCCATAGGGTACTATGAATGGGACTCGATGATGCTAATGCTGTTATGCTTATCGT-CATC 828
consensus_6944#3      AT------------TGACATGGG-----TTATAGCAGTGTCATGATATGGATGGNTCGTT 443
                                    ***   **      * **      *   * **     * *  * * 

consensus_6944#1      T---------ACCTTTTTCTCCCCCATGGCTTGTG--------TGCCCTGTCAATGAACC 772
consensus_6944#2      T---------ACCTTTTTCTCCCCCATGGCTTGTG--------TGCCCTGTCAATGAACC 568
consensus_6944#0      TCTCATGGAGATCTTTAGGGCCTTCTCAAGATGTGACACAACTTGCTCCATGGACGGACG 888
consensus_6944#3      TC---------------------------------------------------------- 445
                      *                                                           

consensus_6944#1      AGAATGATTATGC--------TGAACTGGAAGGGATCCAACTTCGATAATGTGCCATA-- 822
consensus_6944#2      AGAATGATTATGC--------TGAACTGGAAGGGATCCAACTTCGATAATGTGCCATA-- 618
consensus_6944#0      CTGCTTCTTGTGTCCAGTGCATGAAAGGGCAAGCTTCAAACTGAGATCAAATGCCTCTGT 948
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      TGG-TGGTGTACTTTTATCCTA--ATCTACAAAGAACATCA-------TTTTTTGA---- 868
consensus_6944#2      TGGGNGGTGTACTTTTATCCTA--ATCTACAAAGAACATCA-------TTTTTTGA---- 665
consensus_6944#0      CGAGTACTCTCCGTTCAGCCTAGGATCAGCAAACTCCAACACGTTGCCTTCTCTGATGAG 1008
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      -----A-GTCTGC---------------TCGCTCCTCCATGTTGTAATCATATTTATTTT 907
consensus_6944#2      -----AAGTCTGC---------------TCGCTCCTCCATGGTGGAATCATATTTATTTT 705
consensus_6944#0      CATGGAAGCCTGAGGAACGAAGGAGTTGTAGGAGCACCATACCAAAGCTGTAGACATCCC 1068
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      CT--AATAATAATTGGCTAATTGCCAGGGATTTA-TGTTTTCTCTAGTGCAAAAATACTT 964
consensus_6944#2      CT--AATAATAATTGGCTAATTGNCAGGGANTTAATGGTTTCTCTAGTGCAAAAATACTT 763
consensus_6944#0      CTGCAGCATTTACCTTGTGATTGT-GGCGATACTCTGGATCGACGTATCCAAATGTTCCT 1127
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      CTAGCG--AAGACTTA-G-GAGTTAGGATTATGG-AGT---TCAGGATGATACTGGCACT 1016
consensus_6944#2      CTAGCG--AAGACTTAAG-GAGNTAGGATTATGGGAGT---TCAGGATGATACTGGCACT 817
consensus_6944#0      CTAACTTCGGAGCTTACGTGTGATACTCCTATGTCAATGACTCTTGACAGTCCAAAATCC 1187
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      GTATTATCAGTTGTGATAGCAATAAACTTCTATTGGCAGTGGTGTTCAAAACATCCCAGC 1076
consensus_6944#2      GNATTATCAGNTGNGATAGCAANAA----------------------------------- 842
consensus_6944#0      GACAATTTGGGTTCCATATCAACCCCAAGAAGTATATTGGTTGGCTGTAACGGCACAAAT 1247
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      AAGTTCTGTTTTCCACTTTAGAATATACATTTCAAAGTTATG------------------ 1118
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      GAGTTTGACATTGCTTAAATTTGCAGATGTACTAGAGTTTTCCAAATCATGCAACCAACC 1307
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      ------------------------------------------------------------
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      TTGACATCACGGTGAACAATGCAGCCTTCAGGATATATGTGAAGGAACCAAAGGCCACAG 1367
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      ------------------------------------------------------------
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      GCGCTGCCAAGTGCAATCTGCAGCCTCTGAATCCATGACAGGTTACCGTTGATACATAAC 1427
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      ------------------------------------------------------------
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      TCATATACAAGAAAACATTCCTCCTGCCCATCGCAATAACCTCTTAGTGACACAAGGTTT 1487
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      ------------------------------------------------------------
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      GGATGTCTCACATGTGAGAGGCTTGTAACTTCCCTTAGGAAAGTTTCTGCATGCTCGTTC 1547
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      ------------------------------------------------------------
consensus_6944#2      ------------------------------------------------------------
consensus_6944#0      TTAACGATGTGCTTTACAGCAACAGGCCAGCCATTTGCAAGCACTCCTTTGTACACTTTC 1607
consensus_6944#3      ------------------------------------------------------------
                                                                                  

consensus_6944#1      ------------------------------------------
consensus_6944#2      ------------------------------------------
consensus_6944#0      CCTGAAAAATCACATAATAAAGAAGATACATCCAACTTTCAG 1649
consensus_6944#3      ------------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)