cluster # 6945

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Oryza sativa
cluster # 6945 cluster # 6945 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6945#0 length = 826 sequences # 2

consensus_6945#1 length = 794 sequences # 2

consensusID : consensus_6945#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 826
fasta sequence

                              [TCTTTTTATTACCAAATGAACTTTATTTTATAGAAGCAGTCCTGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGCAATATTATATAAGGGTATTCAAAAGATTGACCGCCTCATACTATTGAAATATTAAAAGAAAAAAAAGATCTAATGAATAGAAAAGTGAATTATGAATGCATATAAACAAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCA]

[+] EMBL CB620098             [TCTTTTTATTACCAAATGAACTTTATTTTATAGAAGCAGTCCTGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGCAATATTATATAAGGGTATTCAAAAGATTGACCGCCTCATACTATTGAAATATTAAAAGAAAAAAAAGATCTAATGAATAGAAAAGTGAATTATGAATGCATATAAACAAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACT                                                                    ]
[+] EMBL CB620100             [           gCAAATGAACTTTATTTTATAGAAGCAGTCACGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGCAATATTATATAAGGGTATTCAAAAGATTGACCGCCTCATACTATTGAAATATTAAAAGAAAAAAAAGATCTAATGAATAGAAAAGTGAATTATGAATGCATATAAACAAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCA]




>consensus_6945#0
TCTTTTTATTACCAAATGAACTTTATTTTATAGAAGCAGTCCTGATTCATAACCAAGATA
TCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGA
TGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTT
AACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCA
TTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCG
TGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCA
TGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGT
GAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTA
GGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCAT
ATTCTGCAATATTATATAAGGGTATTCAAAAGATTGACCGCCTCATACTATTGAAATATT
AAAAGAAAAAAAAGATCTAATGAATAGAAAAGTGAATTATGAATGCATATAAACAAACAG
GAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCAATGTAT
CCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAA
CTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCA

consensusID : consensus_6945#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 794
fasta sequence

                              [CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATAGGTGGTACGCAATAGTTATGTAGATAATCCAGGGCAGCAGCTATGTCAGCTGCAATTGTTATTCTAGAGGCGAAACTCAACTGTA]

[+] EMBL CB625901             [CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATAGGTGGTACGCAATAGTTATGTAGATAATCCAGGGCAGCAGCTATGTCAGCTGCAATTGTTATTCTAGAGGCGAAACTCAACTGTA]
[+] EMBL CB625899             [CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATAGGTGGTACGCAATAGTTATGTAGATAATCCAGGGCAGCAGCTATGTCAGCTGCAATTGTTATTCTAGAGGCGAAACTCAACTGT ]




>consensus_6945#1
CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATATCAT
TAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAA
AACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACC
CTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTAC
TGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGAT
GCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGAT
ATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAG
GCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGAT
GATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTC
TGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGT
TGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCAT
GGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATAGGTGGTACGCA
ATAGTTATGTAGATAATCCAGGGCAGCAGCTATGTCAGCTGCAATTGTTATTCTAGAGGC
GAAACTCAACTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6945#0      TCTTTTTATTACCAAATGAACTTTATTTTATAGAAGCAGTCCTGATTCATAACCAAGATA 60
consensus_6945#1      ----CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATA 56
                             * ** ***************************** ******************

consensus_6945#0      TCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGA 120
consensus_6945#1      TCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGA 116
                      ************************************************************

consensus_6945#0      TGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTT 180
consensus_6945#1      TGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTT 176
                      ************************************************************

consensus_6945#0      AACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCA 240
consensus_6945#1      AACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCA 236
                      ************************************************************

consensus_6945#0      TTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCG 300
consensus_6945#1      TTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCG 296
                      ************************************************************

consensus_6945#0      TGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCA 360
consensus_6945#1      TGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCA 356
                      ************************************************************

consensus_6945#0      TGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGT 420
consensus_6945#1      TGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGT 416
                      ************************************************************

consensus_6945#0      GAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTA 480
consensus_6945#1      GAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTA 476
                      ************************************************************

consensus_6945#0      GGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCAT 540
consensus_6945#1      GGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCAT 536
                      ************************************************************

consensus_6945#0      ATTCTGCAATATTATAT---AAGGGTATTCAAAAGATTGACCGCCTCATACTATTGA-AA 596
consensus_6945#1      ATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAA 596
                      ******    * * ***   *  * *  **       **     *** **  * **  **

consensus_6945#0      TATTAAAAGAAAAAAAAGATCTAATGAA--TAGAAAAGTGAATTATGAATGCATATAAAC 654
consensus_6945#1      TCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCAC 656
                      *  *  *****  * **     **  **  **   **   **    *     *  *  **

consensus_6945#0      AAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCA 714
consensus_6945#1      CCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATA-GGTG-- 713
                        *  * *     ** **  *   * ***  * *  * * ****   * **   ****  

consensus_6945#0      ATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAA 774
consensus_6945#1      --GTACGCAAT-AGTTATGTAGATAAT-CCAGGGCAGCAGCTATGTCAGCTGC--AATTG 767
                        ***  ****   *  * * * *  * * * *   * **   *** *   *   **   

consensus_6945#0      CTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCA 826
consensus_6945#1      TTATTCTAGAGGCGAAACTCAACTGTA------------------------- 794
                       ***    * *  ****** *  *