These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1061 fasta sequence [TACGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTGCCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGCGCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCTGCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCGGACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATCCTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACCAAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTACTGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTGACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTCA-CGGGGCTGGTCGTCGCGCTGTTCGGCG-CCGCCGTCGTCGTGGCCGCCGTCGCG-CCGGCTCA-CGTCGAGGAA-CCCGAGGGCTATGCTCCAA-TTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAA-CAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGAC-GATACTGTGCGATAATTCAACACTATCCAGGTAATTTAC-GTTTACTACAGTGAATGCACATAGTTACCGAATCCAATAATG] [+] EMBL AK069219 [TACGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTGCCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGCGCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCTGCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCGGACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATCCTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACCAAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTACTGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTGACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTCA CGGGGCTGGTCGTCGCGCTGTTCGGCG CCGCCGTCGTCGTGGCCGCCGTCGCG CCGGCTCA CGTCGAGGAA CCCGAGGGCTATGCTCCAA TTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAA CAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGAC GATACTGTGCGATAATTCAACACTATCCAGGTAATTTAC GTTTACTA ] [+] EMBL AK061426 [ CGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTGCCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGCGCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCTGCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCGGACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATCCTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACCAAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTACTGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTGACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTCA CGGGGCTGGTCGTCGCGCTGTTCGGCG CCGCCGTCGTCGTGGCCGCCGTCGCG CCGGCTCA CGTCGAGGAA CCCGAGGGCTATGCTCCAA TTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAA CAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGAC GATACTGTGCGATAATTCAACACTATCCAGGTAATTTAC GTTTACTACAGTGAATGCACATAGTTACCGAATCCAATAATG] [+] EMBL BI806936 [ GGCGTTCCTGGTGAACTTCACCGGGNCTGGTCGTCGCGCTGTTCGGCGTCCGCCGTCGTCGTGGCCGCCGTCGCGTCCGGCTCATCGTCGAGGAACCCCGAGGGCTATGCTCCAAGTTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAACCAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGACTGATACTGTGCGATAATTCAACACTATCCAGGTAATTTACGGTTTAaaaaaaaaa ] consensusID : consensus_6951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CACTCACCCGAGACCCGCCGCCGGTAGCAGCGGCACGGCACAGCGCGGCCGCGGCGAAGCGAGGAGGGGAAGGAGACGGGGCGCGATGGGGCTCGGCGTGAGGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCCGCCACCATGGTGCTGGTCTGGTGCATCCACTTCCGCGGCGGCCTCGCCTTCGAGGCCACAAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTTATTGGCTATATAATCCTAGGCAGTGAAGCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACTAAGCTGATCCATCTAATTCTCCATGCAATTGCCCTTGTATTCGGTGCGGTTGGGATATACTGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAGTCTGCATTCTTGGCTTGGGATTGGAACAATTTGTTTGTATGGTATTCAGTGGATATTCGGGTCTGTCGCTTCCTCTCCCCCGTGCTTCGCCNAGCGTGACGATGGTGT] [+] EMBL CA754649 [CACTCACCCGAGACCCGCCGCCGGTAGCAGCGGCACGGCACAGCGCGGCCGCGGCGAAGCGAGGAGGGGAAGGAGACGGGGCGCGATGGGGCTCGGCGTGAGGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCCGCCACCATGGTGCTGGTCTGGTGCATCCACTTCCGCGGCGGCCTCGCCTTCGAGGCCACAAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTTATTGGCTATATAATCCTAGGCAGTGAAGCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACTAAGCTGATCCATCTAATTCTCCATGCAATTGCCCTTGTATTCGGTGCGGTTGGGATATACTGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAGTCTGCATTCTTGGCTTGGGATTGGAACAATTTGTTTGTATGGTATTCAGTGGATATTCGGGTCTGTCGCTTCCTCTCCCCCGTGCTTCGCCNAGCGTGACGATGGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6951#0 TACGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTG 60 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 CCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGC 120 consensus_6951#1 -------------------------CACTCACCCGAGACCCGCCGCCGGTAGCAGCG-GC 34 ** * * * ** ***** * ** ** ** consensus_6951#0 GCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCT 180 consensus_6951#1 ACGGCACAGCGCGGCCGCGGCGAAGCGAGGAGG--GGAAGGAGA-CGGGGCGCGATGG-- 89 * * ** * ** * * * * * *** * * *** ** *** ***** consensus_6951#0 GCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCG 240 consensus_6951#1 ----GGCTCGGCGTGAGGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCG 145 **** ******* ******************************************* consensus_6951#0 GCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCG 300 consensus_6951#1 GCCGCCACCATGGTGCTGGTCTGGTGCATCCACTTCCGCGGCGGCCTCGCCTTCGAGGCC 205 ** ** ********* ************ ****** *********** ******** consensus_6951#0 GACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATC 360 consensus_6951#1 ACAAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTTATTGGCTATATAATC 265 ***************************************** ***** ** ** *** consensus_6951#0 CTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACC 420 consensus_6951#1 CTAGGCAGTGAAGCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACT 325 ** *********** ****** * ****** * * ** * *** ** ** ***** consensus_6951#0 AAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTAC 480 consensus_6951#1 AAGCTGATCCATCTAATTCTCCATGCAATTGCCCTTGTATTCGGTGCGGTTGGGATATAC 385 *********** ** ******** ** ** *** **** * ** ** ** ***** *** consensus_6951#0 TGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGG 540 consensus_6951#1 TGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAGTCTGCATTCTTGG 445 ***** ***** ** ***** ** ** ** ** ************** ******** *** consensus_6951#0 CTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTC 600 consensus_6951#1 CTTGGGATTGGAACAATTTGTTTGTATGGTATTCAGTGGATATTCGGGTCTGTCGC-TTC 504 ** ** ** ******** * **** ** ************** ** * ** ** *** consensus_6951#0 TTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTC 660 consensus_6951#1 CTCT-CCCCCGTGCTTCGCCNAGCGTGACG-ATGGTGT---------------------- 540 *** **** * ** **** ***** * ** * consensus_6951#0 GGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTG 720 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 ACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTC 780 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 ACGGGGCTGGTCGTCGCGCTGTTCGGCGCCGCCGTCGTCGTGGCCGCCGTCGCGCCGGCT 840 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 CACGTCGAGGAACCCGAGGGCTATGCTCCAATTCCGGTCAACTAGCTATGTTTCGCGGTT 900 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 GCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAACAGCAGAATTCATATACCGA 960 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 TTTGTTTGTATTCGGTGGACGATACTGTGCGATAATTCAACACTATCCAGGTAATTTACG 1020 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 TTTACTACAGTGAATGCACATAGTTACCGAATCCAATAATG 1061 consensus_6951#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||