|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1061 fasta sequence
[TACGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTGCCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGCGCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCTGCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCGGACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATCCTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACCAAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTACTGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTGACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTCA-CGGGGCTGGTCGTCGCGCTGTTCGGCG-CCGCCGTCGTCGTGGCCGCCGTCGCG-CCGGCTCA-CGTCGAGGAA-CCCGAGGGCTATGCTCCAA-TTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAA-CAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGAC-GATACTGTGCGATAATTCAACACTATCCAGGTAATTTAC-GTTTACTACAGTGAATGCACATAGTTACCGAATCCAATAATG]
[+] EMBL AK069219 [TACGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTGCCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGCGCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCTGCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCGGACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATCCTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACCAAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTACTGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTGACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTCA CGGGGCTGGTCGTCGCGCTGTTCGGCG CCGCCGTCGTCGTGGCCGCCGTCGCG CCGGCTCA CGTCGAGGAA CCCGAGGGCTATGCTCCAA TTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAA CAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGAC GATACTGTGCGATAATTCAACACTATCCAGGTAATTTAC GTTTACTA ]
[+] EMBL AK061426 [ CGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTGCCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGCGCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCTGCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCGGACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATCCTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACCAAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTACTGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTGACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTCA CGGGGCTGGTCGTCGCGCTGTTCGGCG CCGCCGTCGTCGTGGCCGCCGTCGCG CCGGCTCA CGTCGAGGAA CCCGAGGGCTATGCTCCAA TTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAA CAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGAC GATACTGTGCGATAATTCAACACTATCCAGGTAATTTAC GTTTACTACAGTGAATGCACATAGTTACCGAATCCAATAATG]
[+] EMBL BI806936 [ GGCGTTCCTGGTGAACTTCACCGGGNCTGGTCGTCGCGCTGTTCGGCGTCCGCCGTCGTCGTGGCCGCCGTCGCGTCCGGCTCATCGTCGAGGAACCCCGAGGGCTATGCTCCAAGTTCCGGTCAACTAGCTATGTTTCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAACCAGCAGAATTCATATACCGATTTGTTTGTATTCGGTGGACTGATACTGTGCGATAATTCAACACTATCCAGGTAATTTACGGTTTAaaaaaaaaa ]
consensusID : consensus_6951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[CACTCACCCGAGACCCGCCGCCGGTAGCAGCGGCACGGCACAGCGCGGCCGCGGCGAAGCGAGGAGGGGAAGGAGACGGGGCGCGATGGGGCTCGGCGTGAGGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCCGCCACCATGGTGCTGGTCTGGTGCATCCACTTCCGCGGCGGCCTCGCCTTCGAGGCCACAAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTTATTGGCTATATAATCCTAGGCAGTGAAGCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACTAAGCTGATCCATCTAATTCTCCATGCAATTGCCCTTGTATTCGGTGCGGTTGGGATATACTGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAGTCTGCATTCTTGGCTTGGGATTGGAACAATTTGTTTGTATGGTATTCAGTGGATATTCGGGTCTGTCGCTTCCTCTCCCCCGTGCTTCGCCNAGCGTGACGATGGTGT]
[+] EMBL CA754649 [CACTCACCCGAGACCCGCCGCCGGTAGCAGCGGCACGGCACAGCGCGGCCGCGGCGAAGCGAGGAGGGGAAGGAGACGGGGCGCGATGGGGCTCGGCGTGAGGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCGGCCGCCACCATGGTGCTGGTCTGGTGCATCCACTTCCGCGGCGGCCTCGCCTTCGAGGCCACAAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTTATTGGCTATATAATCCTAGGCAGTGAAGCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACTAAGCTGATCCATCTAATTCTCCATGCAATTGCCCTTGTATTCGGTGCGGTTGGGATATACTGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAGTCTGCATTCTTGGCTTGGGATTGGAACAATTTGTTTGTATGGTATTCAGTGGATATTCGGGTCTGTCGCTTCCTCTCCCCCGTGCTTCGCCNAGCGTGACGATGGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6951#0 TACGCGTACGCCACGCCACAACGCTTCTCGCTCTCCCTCCACTCGTAGCAGCTCGAGCTG 60
consensus_6951#1 ------------------------------------------------------------
consensus_6951#0 CCTGTAGCAGATAGCGCGACGCTGCGACCTTCGTGTGCCCGGCCGCTCGCCGCCCCGCGC 120
consensus_6951#1 -------------------------CACTCACCCGAGACCCGCCGCCGGTAGCAGCG-GC 34
** * * * ** ***** * ** ** **
consensus_6951#0 GCATAAGAGGGAGGAGGAAGGAAGGAGGAGAGATCGTAGCAAGAGCGAAGCGAGATGGCT 180
consensus_6951#1 ACGGCACAGCGCGGCCGCGGCGAAGCGAGGAGG--GGAAGGAGA-CGGGGCGCGATGG-- 89
* * ** * ** * * * * * *** * * *** ** *** *****
consensus_6951#0 GCCGGGCTGGGCGTGAAGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCG 240
consensus_6951#1 ----GGCTCGGCGTGAGGGCGGCGCCGTTCACGTACGTGGCGCACGCGCTGGCCGTGGCG 145
**** ******* *******************************************
consensus_6951#0 GCGGCGGTCATGGTGCTCGTCTGGTGCATCAGCTTCCGGGGCGGCCTCGCGTTCGAGGCG 300
consensus_6951#1 GCCGCCACCATGGTGCTGGTCTGGTGCATCCACTTCCGCGGCGGCCTCGCCTTCGAGGCC 205
** ** ********* ************ ****** *********** ********
consensus_6951#0 GACAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTGATTGGGTACATTATC 360
consensus_6951#1 ACAAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTTATTGGCTATATAATC 265
***************************************** ***** ** ** ***
consensus_6951#0 CTCGGCAGTGAAGCCATAATGATCTACAAGATATTCCCAAAACTGAACCACGACACAACC 420
consensus_6951#1 CTAGGCAGTGAAGCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACT 325
** *********** ****** * ****** * * ** * *** ** ** *****
consensus_6951#0 AAGCTGATCCACCTGATTCTCCACGCGATCGCCATTGTTCTTGGCGCCGTCGGGATCTAC 480
consensus_6951#1 AAGCTGATCCATCTAATTCTCCATGCAATTGCCCTTGTATTCGGTGCGGTTGGGATATAC 385
*********** ** ******** ** ** *** **** * ** ** ** ***** ***
consensus_6951#0 TGCGCCTTCAAGTTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGG 540
consensus_6951#1 TGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAGTCTGCATTCTTGG 445
***** ***** ** ***** ** ** ** ** ************** ******** ***
consensus_6951#0 CTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGTGGATATTTGGATTCGTGGCGTTC 600
consensus_6951#1 CTTGGGATTGGAACAATTTGTTTGTATGGTATTCAGTGGATATTCGGGTCTGTCGC-TTC 504
** ** ** ******** * **** ** ************** ** * ** ** ***
consensus_6951#0 TTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTC 660
consensus_6951#1 CTCT-CCCCCGTGCTTCGCCNAGCGTGACG-ATGGTGT---------------------- 540
*** **** * ** **** ***** * ** *
consensus_6951#0 GGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTG 720
consensus_6951#1 ------------------------------------------------------------
consensus_6951#0 ACCTTCCTCCAGAGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTC 780
consensus_6951#1 ------------------------------------------------------------
consensus_6951#0 ACGGGGCTGGTCGTCGCGCTGTTCGGCGCCGCCGTCGTCGTGGCCGCCGTCGCGCCGGCT 840
consensus_6951#1 ------------------------------------------------------------
consensus_6951#0 CACGTCGAGGAACCCGAGGGCTATGCTCCAATTCCGGTCAACTAGCTATGTTTCGCGGTT 900
consensus_6951#1 ------------------------------------------------------------
consensus_6951#0 GCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAACAGCAGAATTCATATACCGA 960
consensus_6951#1 ------------------------------------------------------------
consensus_6951#0 TTTGTTTGTATTCGGTGGACGATACTGTGCGATAATTCAACACTATCCAGGTAATTTACG 1020
consensus_6951#1 ------------------------------------------------------------
consensus_6951#0 TTTACTACAGTGAATGCACATAGTTACCGAATCCAATAATG 1061
consensus_6951#1 -----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||