cluster # 6955

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Oryza sativa
cluster # 6955 cluster # 6955 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6955#0 length = 810 sequences # 2

consensus_6955#1 length = 506 sequences # 2

consensusID : consensus_6955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence

                              [CACATGAAAGAGCTGAACATTTCGATCAAATCCTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAAAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAATGCAGCAAGGAGACAGAACATGATAATGGCTGATGTAGCACTAAGTGCCCAAGACAAAAATGCAAGCGCTACAGCAAGTTCGAATCTCCCACAAGGCAGTTGTGGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCTTTTGACTGTCAAGG----CATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAATCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGCCATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCCCCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGACCCCCCAAACCCCTCCTCCTCCGCCGCCGCCGCCCTCCCCCTCACCTACCTCCACCACCGGCCATGGACCAACCGGATCACCGCCGGCGCACTCCAATCGAGGTGGTTGGAAAAC]

[+] EMBL CB679741             [CACATGAAAGAGCTGAACATTTCGATCAAATCCTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAAAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAATGCAGCAAGGAGACAGAACATGATAATGGCTGATGTAGCACTAAGTGCCCAAGACAAAAATGCAAGCGCTACAGCAAGTTCGAATCTCCCACAAGGCAGTTGTGGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCTTTTGACTGTCAAGG    CATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAATCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGCCATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCCCCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGACCCCCCAAACCCCTCCTCCTCCGCCGCCGCCGCCCTCCCCCTCACCTACCTCCACCACCGGCCATGGACCAACCGGATCACCGCCGGCGCACTCCAATCGAGGTGGTTGGAAAAC]
[-] EMBL AK103232             [                                                                                       AGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAAAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAATGCAGCAAGGAGACAGAACATGATAATGGCTGATGTAGCACTAAGTGCCCAAGACAAAAATGCAAGCGCTACAGCAAGTTCGAATCTCCCACAAGGCAGTTGTGGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCTTTTGACTGTCAAGGCATACATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAATCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGCCATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCCCCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGAC                                                                                                                  ]




>consensus_6955#0
CACATGAAAGAGCTGAACATTTCGATCAAATCCTCCATTCAGTAGTTTCTAGAAAATGTT
CACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTA
CATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAAAACAGAAAAAAGG
CAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAATGCAGCAAGGAGAC
AGAACATGATAATGGCTGATGTAGCACTAAGTGCCCAAGACAAAAATGCAAGCGCTACAG
CAAGTTCGAATCTCCCACAAGGCAGTTGTGGATACCTTCTGCAGAAAAGCACGTCCCTTT
TAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTA
CCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCTTTTGACTG
TCAAGGCATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAATCCCATTG
ATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGCCATGACGC
CGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCCCCACGTCC
CGGGCCTCCACCACGCCACCTCCCACATCCCACGACCCCCCAAACCCCTCCTCCTCCGCC
GCCGCCGCCCTCCCCCTCACCTACCTCCACCACCGGCCATGGACCAACCGGATCACCGCC
GGCGCACTCCAATCGAGGTGGTTGGAAAAC

consensusID : consensus_6955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 506
fasta sequence

                              [TTTTTTTTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCAC-TTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAACAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAACTGCAGCAAGGAGACAGANCATGATAACTGGCTGATGTAGCACTACGCTGCCCCACGACAACAAATGCAAGCGCTACNNCAAGTTCGAACTCTCCCACAAGGCNGTCGTGCGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCTGCATCAAATAGATGGAGTCAATTTATGCTGCTGAAGTCTGTGAATTATAAACGTGGTTGCATGAATGACACCCCAATTGCTCAAAAAAT]

[-] EMBL BI806844             [TTTTTTTTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCAC TTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAACAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAACTGCAGCAAGGAGACAGANCATGATAACTGGCTGATGTAGCACTACGCTGCCCCACGACAACAAATGCAAGCGCTACNNCAAGTTCGAACTCTCCCACAAGGCNGTCGTGCGATACCTTCTGCAGAAAAGCAC                                                                                                                                                                ]
[-] EMBL AK059391             [      TTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAA AACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAA TGCAGCAAGGAGACAGAACATGATAA TGGCTGATGTAGCACTAAG TG CCCAAGACAA AAATGCAAGCGCTACAGCAAGTTCGAA TCTCCCACAAGGCAGTTGTG GATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCTGCATCAAATAGATGGAGTCAATTTATGCTGCTGAAGTCTGTGAATTATAAACGTGGTTGCATGAATGACACCCCAATTGCTCAAAAAAT]




>consensus_6955#1
TTTTTTTTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGAC
TTATGAACTTCCCCAGCATTTCCACTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAA
TGATCCTATACAAAATCAAAGCTAACAAGATAACAACAGAAAAAAGGCAGCACTATAAAC
AGAACTTACACAGGATTATATGCAAGACTAGAACTGCAGCAAGGAGACAGANCATGATAA
CTGGCTGATGTAGCACTACGCTGCCCCACGACAACAAATGCAAGCGCTACNNCAAGTTCG
AACTCTCCCACAAGGCNGTCGTGCGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACA
GAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCTGCA
TCAAATAGATGGAGTCAATTTATGCTGCTGAAGTCTGTGAATTATAAACGTGGTTGCATG
AATGACACCCCAATTGCTCAAAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6955#0      CACATGAAAGAGCTGAACATTTCGATCAAATCCTCCATTCAGTAGTTTCTAGAAAATGTT 60
consensus_6955#1      -------------TTTTTTTTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTT 47
                                   *     ************* ***************************

consensus_6955#0      CACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTA 120
consensus_6955#1      CACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTT-CGGTCGTGTGGTTCACTA 106
                      ***************************************** ******************

consensus_6955#0      CATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAA-AACAGAAAAAAG 179
consensus_6955#1      CATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAACAACAGAAAAAAG 166
                      *********************************************** ************

consensus_6955#0      GCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAA-TGCAGCAAGGAG 238
consensus_6955#1      GCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAACTGCAGCAAGGAG 226
                      *********************************************** ************

consensus_6955#0      ACAGAACATGATAA-TGGCTGATGTAGCACTAAGTG--CCCAAGACAA-AAATGCAAGCG 294
consensus_6955#1      ACAGANCATGATAACTGGCTGATGTAGCACTACGCTGCCCCACGACAACAAATGCAAGCG 286
                      ***** ******** ***************** *    **** ***** ***********

consensus_6955#0      CTACAGCAAGTTCGAA-TCTCCCACAAGGCAGTTGTG-GATACCTTCTGCAGAAAAGCAC 352
consensus_6955#1      CTACNNCAAGTTCGAACTCTCCCACAAGGCNGTCGTGCGATACCTTCTGCAGAAAAGCAC 346
                      ****  ********** ************* ** *** **********************

consensus_6955#0      GTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAG 412
consensus_6955#1      GTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAG 406
                      ************************************************************

consensus_6955#0      TGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCT 472
consensus_6955#1      TGCAGTTACCTG--CATCAA--ATAGATGGAGTCA----ATTTATGCTGCTGAAGT--CT 456
                      **********    *  ***  * * *   * ***    *       ** ***  *  **

consensus_6955#0      TTTGACTGTCAAGGCATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAA 532
consensus_6955#1      GTGAATTATAAACGTGGTTGCATGAATG-----ACACCCCAATTGCTCAAAAAAT----- 506
                       *  * * * ** *      * * ** *     *   *****   *   **  **     

consensus_6955#0      TCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGC 592
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCC 652
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGACCCCCCAAACCCCTCCT 712
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CCTCCGCCGCCGCCGCCCTCCCCCTCACCTACCTCCACCACCGGCCATGGACCAACCGGA 772
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      TCACCGCCGGCGCACTCCAATCGAGGTGGTTGGAAAAC 810
consensus_6955#1      --------------------------------------