These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence [CACATGAAAGAGCTGAACATTTCGATCAAATCCTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAAAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAATGCAGCAAGGAGACAGAACATGATAATGGCTGATGTAGCACTAAGTGCCCAAGACAAAAATGCAAGCGCTACAGCAAGTTCGAATCTCCCACAAGGCAGTTGTGGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCTTTTGACTGTCAAGG----CATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAATCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGCCATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCCCCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGACCCCCCAAACCCCTCCTCCTCCGCCGCCGCCGCCCTCCCCCTCACCTACCTCCACCACCGGCCATGGACCAACCGGATCACCGCCGGCGCACTCCAATCGAGGTGGTTGGAAAAC] [+] EMBL CB679741 [CACATGAAAGAGCTGAACATTTCGATCAAATCCTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAAAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAATGCAGCAAGGAGACAGAACATGATAATGGCTGATGTAGCACTAAGTGCCCAAGACAAAAATGCAAGCGCTACAGCAAGTTCGAATCTCCCACAAGGCAGTTGTGGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCTTTTGACTGTCAAGG CATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAATCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGCCATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCCCCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGACCCCCCAAACCCCTCCTCCTCCGCCGCCGCCGCCCTCCCCCTCACCTACCTCCACCACCGGCCATGGACCAACCGGATCACCGCCGGCGCACTCCAATCGAGGTGGTTGGAAAAC] [-] EMBL AK103232 [ AGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAAAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAATGCAGCAAGGAGACAGAACATGATAATGGCTGATGTAGCACTAAGTGCCCAAGACAAAAATGCAAGCGCTACAGCAAGTTCGAATCTCCCACAAGGCAGTTGTGGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCTTTTGACTGTCAAGGCATACATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAATCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGCCATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCCCCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGAC ] consensusID : consensus_6955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 506 fasta sequence [TTTTTTTTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCAC-TTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAACAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAACTGCAGCAAGGAGACAGANCATGATAACTGGCTGATGTAGCACTACGCTGCCCCACGACAACAAATGCAAGCGCTACNNCAAGTTCGAACTCTCCCACAAGGCNGTCGTGCGATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCTGCATCAAATAGATGGAGTCAATTTATGCTGCTGAAGTCTGTGAATTATAAACGTGGTTGCATGAATGACACCCCAATTGCTCAAAAAAT] [-] EMBL BI806844 [TTTTTTTTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCAC TTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAACAACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAACTGCAGCAAGGAGACAGANCATGATAACTGGCTGATGTAGCACTACGCTGCCCCACGACAACAAATGCAAGCGCTACNNCAAGTTCGAACTCTCCCACAAGGCNGTCGTGCGATACCTTCTGCAGAAAAGCAC ] [-] EMBL AK059391 [ TTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTTCACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTACATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAA AACAGAAAAAAGGCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAA TGCAGCAAGGAGACAGAACATGATAA TGGCTGATGTAGCACTAAG TG CCCAAGACAA AAATGCAAGCGCTACAGCAAGTTCGAA TCTCCCACAAGGCAGTTGTG GATACCTTCTGCAGAAAAGCACGTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAGTGCAGTTACCTGCATCAAATAGATGGAGTCAATTTATGCTGCTGAAGTCTGTGAATTATAAACGTGGTTGCATGAATGACACCCCAATTGCTCAAAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6955#0 CACATGAAAGAGCTGAACATTTCGATCAAATCCTCCATTCAGTAGTTTCTAGAAAATGTT 60 consensus_6955#1 -------------TTTTTTTTTCGATCAAATCTTCCATTCAGTAGTTTCTAGAAAATGTT 47 * ************* *************************** consensus_6955#0 CACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTTTCGGTCGTGTGGTTCACTA 120 consensus_6955#1 CACTCTAAAGGACTTATGAACTTCCCCAGCATTTCCACTTT-CGGTCGTGTGGTTCACTA 106 ***************************************** ****************** consensus_6955#0 CATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAA-AACAGAAAAAAG 179 consensus_6955#1 CATATTCTTGAAAATGATCCTATACAAAATCAAAGCTAACAAGATAACAACAGAAAAAAG 166 *********************************************** ************ consensus_6955#0 GCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAA-TGCAGCAAGGAG 238 consensus_6955#1 GCAGCACTATAAACAGAACTTACACAGGATTATATGCAAGACTAGAACTGCAGCAAGGAG 226 *********************************************** ************ consensus_6955#0 ACAGAACATGATAA-TGGCTGATGTAGCACTAAGTG--CCCAAGACAA-AAATGCAAGCG 294 consensus_6955#1 ACAGANCATGATAACTGGCTGATGTAGCACTACGCTGCCCCACGACAACAAATGCAAGCG 286 ***** ******** ***************** * **** ***** *********** consensus_6955#0 CTACAGCAAGTTCGAA-TCTCCCACAAGGCAGTTGTG-GATACCTTCTGCAGAAAAGCAC 352 consensus_6955#1 CTACNNCAAGTTCGAACTCTCCCACAAGGCNGTCGTGCGATACCTTCTGCAGAAAAGCAC 346 **** ********** ************* ** *** ********************** consensus_6955#0 GTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAG 412 consensus_6955#1 GTCCCTTTTAAACAGAACCATAACACCTCCAGCTGAGCAAGATGCAGCAAAGGACAGAAG 406 ************************************************************ consensus_6955#0 TGCAGTTACCCAGTCTCCAATGACAAACAAACTCACGAGAAGAGCATTGTTGAGATCCCT 472 consensus_6955#1 TGCAGTTACCTG--CATCAA--ATAGATGGAGTCA----ATTTATGCTGCTGAAGT--CT 456 ********** * *** * * * * *** * ** *** * ** consensus_6955#0 TTTGACTGTCAAGGCATACACGTCAAGGCATGCAAGTCCCAAGCTCCACAATGATTGTAA 532 consensus_6955#1 GTGAATTATAAACGTGGTTGCATGAATG-----ACACCCCAATTGCTCAAAAAAT----- 506 * * * * ** * * * ** * * ***** * ** ** consensus_6955#0 TCCCATTGATGCAATCAAGTAGCAGAAGGCCGTGTAGTTGGCGAAGCCGGCCCCGGACGC 592 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CATGACGCCGATGGAGGCTCCGGCGAAGGCGACCTGCCCCACCCGCATCGCCAGCCCGCC 652 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CCACGTCCCGGGCCTCCACCACGCCACCTCCCACATCCCACGACCCCCCAAACCCCTCCT 712 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CCTCCGCCGCCGCCGCCCTCCCCCTCACCTACCTCCACCACCGGCCATGGACCAACCGGA 772 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 TCACCGCCGGCGCACTCCAATCGAGGTGGTTGGAAAAC 810 consensus_6955#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||