These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1752 fasta sequence [CGGCGCTCGTCTTTCTCCCCTCCATTCCATTTTTCCTTCTCCTCTTCAACCAAACGAAACCCTAGCCGCCTCCTATAGCTAAGCTAAGCTCCCTCCCCTCCTCCCTCTCATCCATCAATGGGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCACCTTCCCCTGCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGACCAGCTGGGCCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCTGGGAGCGCGGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCCGCCTTGACCACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCAAGGCCGCCTCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCTCCCACCTCTACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGTTGCTCGCGCCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACCTCGGCATCCAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTG-CGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGTGAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATGAGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCACAATCTGACTGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCATGCAAATTGTACCAACATTGCAGAGGGATATGGCTGCTGTAAAAGTCTCTTCTTTCCTTTGCAAAAATAGGATCATCCTTCGTTGTATTTATAGCTTTGAACTCATTTCATGCATGAGGAAACCATGAAAGAACGCTACT] [+] EMBL AK100002 [CGGCGCTCGTCTTTCTCCCCTCCATTCCATTTTTCCTTCTCCTCTTCAACCAAACGAAACCCTAGCCGCCTCCTATAGCTAAGCTAAGCTCCCTCCCCTCCTCCCTCTCATCCATCAATGGGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCACCTTCCCCTGCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGACCAGCTGGGCCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCTGGGAGCGCGGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCCGCCTTGACCACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCAAGGCCGCCTCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCTCCCACCTCTACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGTTGCTCGCGCCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACCTCGGCATCCAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCAAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTG CGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGTGAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATGAGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCACAATCTGACTGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCATGCAAATTGTACCAACATTGCAGAGGGATATGGCTGCTGTAAAAGTCTCTTCTTTCCTTTGCAAAAATAGGATCATCCTTCGTTGTATTTATAGCTTTGAACTCATTTCATGCATGAGGAAACCATGAAAGAACGCTACT] [-] EMBL CB663104 [ CAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTG CGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGTGAGG TTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATGAGGATC ] [+] EMBL CA767249 [ ACATAAT NCTCTGCAGTACACAGAGGAAGGCTTACTGACCGTCGATGAGAACCGGGATGGCCCTGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGNGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGNGTGGCGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGNACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTACTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGAGTACTATGATTCGTTTTGTATGCTGATTNGATTAGTGTGNGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGGTNATGCTGTGAATTGNTGTGCCGGCATTGTAAACCGGCATTTTGGNATNGCCT ] consensusID : consensus_6957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCCTTATGAGCCTTTGATAGCCCCTGTCCTCCCGAATGTTACTCCNGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCCGTTCTAGTCACTGATGGAGTCGAGCCCATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCCAGAGGATCTAACTGTGCGCCCGCCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGCTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCTCCAAAAAAAAAA] [+] EMBL BI806815 [TTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCCTTATGAGCCTTTGATAGCCCCTGTCCTCCCGAATGTTACTCCNGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCCGTTCTAGTCACTGATGGAGTCGAGCCCATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCCAGAGGATCTAACTGTGCGCCCGCCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGCTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6957#0 CGGCGCTCGTCTTTCTCCCCTCCATTCCATTTTTCCTTCTCCTCTTCAACCAAACGAAAC 60 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 CCTAGCCGCCTCCTATAGCTAAGCTAAGCTCCCTCCCCTCCTCCCTCTCATCCATCAATG 120 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 GGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCACCTTCCCCT 180 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 GCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGACCAGCTGG 240 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 GCCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCTGGGAGCGC 300 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 GGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCCGCCTTGAC 360 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 CACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCAAGGCCGCC 420 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 TCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCTCCCACCTC 480 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 TACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCCACCTCTAC 540 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 GCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGTTGCTCGCG 600 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 CCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACCTCGGCATC 660 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 CAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGA 720 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 GATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATC 780 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 ACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCT 840 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 GCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTT 900 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 TATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTC 960 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 CTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGA 1020 consensus_6957#1 -------------------------------------------TTCTTTTCATGAAGGGA 17 ***************** consensus_6957#0 ACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAG 1080 consensus_6957#1 ACAGCATGGTGTGGTGCTGGTGCCGACCCTTATGAGCCTTTGATAGCCCCTGTCCTCCCG 77 **************************** ******************* ********* * consensus_6957#0 AATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTC 1140 consensus_6957#1 AATGTTACTCCNGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTC 137 *********** ************************************************ consensus_6957#0 CCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTA 1200 consensus_6957#1 CCCCCGTTCTAGTCACTGATGGAGTCGAGCCCATTTTGTAATCTGAGCTAGATTGCTTTA 197 **** ************************** **************************** consensus_6957#0 TTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCG--CAGGGTCTTGCCTG 1258 consensus_6957#1 TTGAGGAGCAACGTCTATGCCCCAGAGGATCTAACTGTGCGCCCGCCAGGGTCTTGCCTG 257 ********************** ******************** ************** consensus_6957#0 CTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGA 1318 consensus_6957#1 CTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGA 317 ************************************************************ consensus_6957#0 TAGGTTCTGACTG-TTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTAT 1377 consensus_6957#1 TAGGTTCTGACTGCTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTAT 377 ************* ********************************************** consensus_6957#0 GCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGT 1437 consensus_6957#1 GCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCT----CCAAAAAA 433 ************************************************ ** * consensus_6957#0 GAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATG 1497 consensus_6957#1 AAAA-------------------------------------------------------- 437 * consensus_6957#0 AGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCACAATC 1557 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 TGACTGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCATGCAA 1617 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 ATTGTACCAACATTGCAGAGGGATATGGCTGCTGTAAAAGTCTCTTCTTTCCTTTGCAAA 1677 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 AATAGGATCATCCTTCGTTGTATTTATAGCTTTGAACTCATTTCATGCATGAGGAAACCA 1737 consensus_6957#1 ------------------------------------------------------------ consensus_6957#0 TGAAAGAACGCTACT 1752 consensus_6957#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||