These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACCCATTTTACTCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATATCCCCTTTAAGGAGGGGAAATTCTAACCTGGGGGAAAAAAAGGGCAAAACTGTTCCCTGGGAAAAAATGTTATCCCCTAAAAATTCCACAAAAAAAACAACCCGGAAACAAAAAGGGAAAACCCGGGGGGGCCTAAAAAGGGACCCAACCCACATTAATTGGGTGGCCCCCACT] [+] EMBL CF300686 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACCCATTTTACTCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATATCCCCTTTAAGGAGGGGAAATTCTAACCTGGGGGAAAAAAAGGGCAAAACTGTTCCCTGGGAAAAAATGTTATCCCCTAAAAATTCCACAAAAAAAACAACCCGGAAACAAAAAGGGAAAACCCGGGGGGGCCTAAAAAGGGACCCAACCCACATTAATTGGGTGGCCCCCACT] consensusID : consensus_696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCGGGAAAACCCCCCATTCCCAAACAACCGAAGGGCAAAATTTTTCCCCCTTCAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATAACCCCTTTAAGGAGGGGAAATTTTAACCTGGGGGAAAAAAAGGCCAAAACTGTTCCCCGGGAAAAAATGTTACCCCCCCAAAATTCCCCACAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCCGGGGGCCCCA] [+] EMBL CF331667 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCGGGAAAACCCCCCATTCCCAAACAACCGAAGGGCAAAATTTTTCCCCCTTCAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATAACCCCTTTAAGGAGGGGAAATTTTAACCTGGGGGAAAAAAAGGCCAAAACTGTTCCCCGGGAAAAAATGTTACCCCCCCAAAATTCCCCACAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCCGGGGGCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_696#0 ----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56 consensus_696#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 ******************************************************** consensus_696#0 TTTTTTTAACA------AAAACCCA----------------------------TTTTACT 82 consensus_696#1 TTTTTTTAAAACCCGGGAAAACCCCCCATTCCCAAACAACCGAAGGGCAAAATTTTTCCC 120 ********* * ******* **** * consensus_696#0 CCTTAAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATATCCCCTT 142 consensus_696#1 CCTTCAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATAACCCCTT 180 **** ************************************************ ****** consensus_696#0 TAAGGAGGGGAAATTCTAACCTGGGGGAAAAAAAGGGCAAAACTGTTCCCTGGGAAAAAA 202 consensus_696#1 TAAGGAGGGGAAATTTTAACCTGGGGGAAAAAAAGGCCAAAACTGTTCCCCGGGAAAAAA 240 *************** ******************** ************* ********* consensus_696#0 TGTTATCCCCTAAAAATTCCACAAAAAAAACAACCCGGAAACAAAAAGGGAAAACCCGGG 262 consensus_696#1 TGTTACCCCCCCAAAATTCCCCACAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCCGG 300 ***** **** ******** ** ****** ****** ******************* ** consensus_696#0 GGGGCCTAAAAAGGGACCCAACCCACATTAATTGGGTGGCCCCCACT 309 consensus_696#1 GGGCCCCA--------------------------------------- 308 *** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||