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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[CGCCGCGCCACCAAACCATCTTCCTCCGCAGGTCGTTCCCTTTTATCGGCGGCGGGTAAATATCCAAACTTGTATATTCTGAGTGGTTCTTGCCAAACTGCCAATGAACCGGGTGCTCCATCATAAAGCATTTGAACCACACGCGTTGATCCATACGCACCAGTGTATAACTATACAGTACATGCAAGTATGCAACTGGGCGAATGCATGATTCGTGACTCCGTCCGTATGCAACTTTTTAAATGGTTGCATGGTTGACGCACTGGTTATGATTTACTCATCTGAGGAGCGAGTTCAGCCTGTGTTGACTGTACACCAAATCGGGAGGCATCCGGGCATTCGATCGGGGGCCGCTCGCGGGTGGTGGTGATGAGAACCCCGGGCCTTTCATGGCTGCCGGGGCGGGTTACCCNGGGAAAAGACTGATCAGGAATTCCTTGCACAACTGGAGCTGTTGATAAGGTGGCGCCGTGATCCGTTGGGACCAGGGGACACTTGGCCACTTTACGACTTTGTTTTGCCTAAATTGGGATCCATTGTTAATTATTTCTTCTTGTTATTGTAAGGTGTTACCGTTAACAACAATGAGTATTGTTTTTTTTTCCTCCACTTCCTTTTAATTGAAAAATTGACCCACCTTTTTTGTTTCAGAAAAAAAA]
[+] EMBL BE039729 [CGCCGCGCCACCAAACCATCTTCCTCCGCAGGTCGTTCCCTTTTATCGGCGGCGGGTAAATATCCAAACTTGTATATTCTGAGTGGTTCTTGCCAAACTGCCAATGAACCGGGTGCTCCATCATAAAGCATTTGAACCACACGCGTTGATCCATACGCACCAGTGTATAACTATACAGTACATGCAAGTATGCAACTGGGCGAATGCATGATTCGTGACTCCGTCCGTATGCAACTTTTTAAATGGTTGCATGGTTGACGCACTGGTTATGATTTACTCATCTGAGGAGCGAGTTCAGCCTGTGTTGACTGTACACCAAATCGGGAGGCATCCGGGCATTCGATCGGGGGCCGCTCGCGGGTGGTGGTGATGAGAACCCCGGGCCTTTCATGGCTGCCGGGGCGGGTTACCCNGGGAAAAGACTGATCAGGAATTCCTTGCACAACTGGAGCTGTTGATAAGGTGGCGCCGTGATCCGTTGGGACCAGGGGACACTTGGCCACTTTACGACTTTGTTTTGCCTAAATTGGGATCCATTGTTAATTATTTCTTCTTGTTATTGTAAGGTGTTACCGTTAACAACAATGAGTATTGTTTTTTTTTCCTCCACTTCCTTTTAATTGAAAAATTGACCCACCTTTTTTGTTTCAGAAAAAAAA]
consensusID : consensus_6965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CGCCGCGCCACCAAACCATCTTCCTCCGCAGGTCGTTCCCTTTTATCGGCGGCGGGTAAATATCCAAACTTGTATATTCTGAGTGGTTCTTGCCAAACTGCCAATGAACCGGGTGCTCCATCATAAAGCATTTGAACCACACGCGTTGATCCATACGCACCAGTGTATAACTATACAGTACATGCAAGTATGCAACTGGGCGAATGCATGATTCGTGACTCCGTACGTATGCAACTTTTTAAATGGTTTCATGGTTGACGCACTGTTTATGATTTACTTATCTGAGGAGCAAGTTTCAGCCTTTGTGGTACTGGCACCATATTGGGTGGCATGTGGTATTTTATCTGCTTCCTATATTAGCTGGGTGTGATTTGTATCTTTTGCGTCTTTTGTTGTTATTGTTGATTTGTTTGAAGTGTCTGTTAGTAATGATTTATTTTGTTTTTATTTTTTTTATCCCTTTTTAGTTGTGATTACGGTTTTTGTTTTTGGGTTCTGTTTCTTTTTTTTTGAGATTTTTTTTTTTTTGGACTTTGTACATTTTTGATATTGTACCTTATATTTATATTTTGTCTTATTTTTTTCTTGTTGGCTGTTTTTGTTTCTTATTATATTTCCTTTTTTTCTTTGTATTTTTTATTACTGGGTGTTT]
[+] EMBL BE039742 [CGCCGCGCCACCAAACCATCTTCCTCCGCAGGTCGTTCCCTTTTATCGGCGGCGGGTAAATATCCAAACTTGTATATTCTGAGTGGTTCTTGCCAAACTGCCAATGAACCGGGTGCTCCATCATAAAGCATTTGAACCACACGCGTTGATCCATACGCACCAGTGTATAACTATACAGTACATGCAAGTATGCAACTGGGCGAATGCATGATTCGTGACTCCGTACGTATGCAACTTTTTAAATGGTTTCATGGTTGACGCACTGTTTATGATTTACTTATCTGAGGAGCAAGTTTCAGCCTTTGTGGTACTGGCACCATATTGGGTGGCATGTGGTATTTTATCTGCTTCCTATATTAGCTGGGTGTGATTTGTATCTTTTGCGTCTTTTGTTGTTATTGTTGATTTGTTTGAAGTGTCTGTTAGTAATGATTTATTTTGTTTTTATTTTTTTTATCCCTTTTTAGTTGTGATTACGGTTTTTGTTTTTGGGTTCTGTTTCTTTTTTTTTGAGATTTTTTTTTTTTTGGACTTTGTACATTTTTGATATTGTACCTTATATTTATATTTTGTCTTATTTTTTTCTTGTTGGCTGTTTTTGTTTCTTATTATATTTCCTTTTTTTCTTTGTATTTTTTATTACTGGGTGTTT]
consensusID : consensus_6965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence
[CGCCGCGCCACCAAACCATCTTCCTCCGCAGCTGAGGAGCGAGTTCAGCCTGTGTCGACTGTACACCAGATCGGGAGGCATCCGGCAATTCGATCGGCGGCCGCTAGCGGGTGGTGGTGATGAGAACCCGGGGCCATCCATGGCTGCCGCGGCGGCGTCACCCGAGGAAAACGACGGATCAGGAAGTTCCATGCAGCAACTGGAGCTGATGGATCAAGGTGGCGCCGTTGATCCGGATTGGGACCAGTGGGACGACTTGGCCACCTTGACCGCACTTCTGTACTGGCCTAGAGATTAGGGATGCCAATTGTTTACATGATCTTGCTCGTAGTGCTAACTGTGAAGTGCATGTTACACGTATCAACGACCAAGTGTAGTACATGCTTTTTTTTCTTTTGCCGCGCAAACTCTCCAGTATTAACATAAGAAAAAAAAAATCAGAACACACACAATTTTTTTTGGTTTCTCCAAATATAATTAATTAATTATTGTTTTCTTCAGTTAATCATATTTTTCTAGTTGGATCTTCGCCCTTGGCCCTGTGGGATCTCCTCCAACTTTTCTGATAATAGGATTTGTTTATACTAGTTCATCCGTCACAAAATGTAAGGTATACATGTATTTTAGATGGTTTCATTAATACAA]
[+] EMBL AK071274 [CGCCGCGCCACCAAACCATCTTCCTCCGCAGCTGAGGAGCGAGTTCAGCCTGTGTCGACTGTACACCAGATCGGGAGGCATCCGGCAATTCGATCGGCGGCCGCTAGCGGGTGGTGGTGATGAGAACCCGGGGCCATCCATGGCTGCCGCGGCGGCGTCACCCGAGGAAAACGACGGATCAGGAAGTTCCATGCAGCAACTGGAGCTGATGGATCAAGGTGGCGCCGTTGATCCGGATTGGGACCAGTGGGACGACTTGGCCACCTTGACCGCACTTCTGTACTGGCCTAGAGATTAGGGATGCCAATTGTTTACATGATCTTGCTCGTAGTGCTAACTGTGAAGTGCATGTTACACGTATCAACGACCAAGTGTAGTACATGCTTTTTTTTCTTTTGCCGCGCAAACTCTCCAGTATTAACATAAGAAAAAAAAAATCAGAACACACACAATTTTTTTTGGTTTCTCCAAATATAATTAATTAATTATTGTTTTCTTCAGTTAATCATATTTTTCTAGTTGGATCTTCGCCCTTGGCCCTGTGGGATCTCCTCCAACTTTTCTGATAATAGGATTTGTTTATACTAGTTCATCCGTCACAAAATGTAAGGTATACATGTATTTTAGATGGTTTCATTAATACAA]
[+] EMBL AU057135 [ CGGGTGGTGGTGATGAGAACCCGGGGCCATCCATGGCTGCCGCGGCGGCGTCACCCGAGGAAAACGACGGATCAGGAAGTTCCATGCAGCAACTGGAGCTGATGGATCAAGGTGGCGCCGTTGATCCGGATTGGGACCAGTGGGACGACTTGGCCACCTTGACCGCACTTCTGTACTGGCCTAGAGATTAGGGATGCCAATTGTTTACATGATCTTGCTCGTAGTGCTAACTGTGAAGTGCATGTTACACGTATCAACGACCAAGTGTAGTACATGCTTTTTTTTCTTTTGCCGCGCAAACTCTCCAGTATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6965#0 CGCCGCGCCACCAAACCATCTTCCTCCGCAGGTCGTTCCC---TTTTATCGGCGGCGGGT 57
consensus_6965#1 CGCCGCGCCACCAAACCATCTTCCTCCGCAGGTCGTTCCC---TTTTATCGGCGGCGGGT 57
consensus_6965#2 CGCCGCGCCACCAAACCATCTTCCTCCGCAGCTGAGGAGCGAGTTCAGCCTGTGTCGACT 60
******************************* * * ** * * * ** *
consensus_6965#0 AAATATCCAAACTTGTATATTCTGAGTGGTTCTTGCCAAACTGCCAATGAACCGGGTGCT 117
consensus_6965#1 AAATATCCAAACTTGTATATTCTGAGTGGTTCTTGCCAAACTGCCAATGAACCGGGTGCT 117
consensus_6965#2 GTACA-CCAGATCGGGAGGCATCCGGCAATTC--GATCGGCGGCCGCTAG--CGGGTGGT 115
* * *** * * * * *** * * *** * ****** *
consensus_6965#0 CCATCATAAAGCATTTGAACCACACGCGTTGATCCATACG----CACCAGTGTATAACTA 173
consensus_6965#1 CCATCATAAAGCATTTGAACCACACGCGTTGATCCATACG----CACCAGTGTATAACTA 173
consensus_6965#2 G-GTGATGAGAACCCGGGGCCATCCATGGCTGCCGCGGCGGCGTCACCCGAGGAAAACGA 174
* ** * * *** * * * ** **** * * * *** *
consensus_6965#0 TACAGTACATGCAAGTATGCAACTGGGCGAATGCATGATTCGTGACTCCGTCCGTATGCA 233
consensus_6965#1 TACAGTACATGCAAGTATGCAACTGGGCGAATGCATGATTCGTGACTCCGTACGTATGCA 233
consensus_6965#2 CGGATCAGGAAGTTCCATGCAGCAACTGGAGCTGATGGATCAAGGTGGCGCCGTTGATCC 234
* * ***** * ** *** ** * ** * *
consensus_6965#0 ACTTTTTAAATGGTTGCATGGTTGACGCACTGGTTATGATTTACTCATCTGAGGAGCGAG 293
consensus_6965#1 ACTTTTTAAATGGTTTCATGGTTGACGCACTGTTTATGATTTACTTATCTGAGGAGCAAG 293
consensus_6965#2 GGATTGGGACCAGTGGGACGACTTGGCCACCTTGACCGCACTTCTGTACTGGCCTAGAGA 294
** * ** * * * *** * * ** ***
consensus_6965#0 TT-CAGCCTGTGTTGACTGTACACCAAATCGGGAGGCATCCGGGCATTCGATCGGGGGCC 352
consensus_6965#1 TTTCAGCCTTTGTGGTACTGGCACCATATTGGGTGGCATGTGG-TATTTTATCTGCTTCC 352
consensus_6965#2 TT-AGGGATGCCAATTGTTTACATGATCTTGCTCGTAGTGCTAAC-TGTGAAGTGCATGT 352
** * * ** * * * * * * * *
consensus_6965#0 GCTCGCGGGTGGTGGTGATGAGAACCCCGGGCCTTTCATGGCTGCCGGGGCGGGTTACCC 412
consensus_6965#1 TATATTAGCTGGGTGTGATTTGTATCTTTTGCGTCTT-TTGTTGTTATTGTTGATTTGTT 411
consensus_6965#2 TACACGTATCAACGACCAAGTGTAGTACATGCTTTTTTTTCTTTTGCCGCGCAAACTCTC 412
* * * ** * * * *
consensus_6965#0 NGGGAAAAGACTGATCAGGAATTCCTTGCACAACTGGAGCTGTTGATAAGGTGGCGCCGT 472
consensus_6965#1 TG--AAGTGTCTG-TTAGTAATGATTTATTTTGTTTTTATTTTTTTTAT-------CCCT 461
consensus_6965#2 CAGTATTAACATAAGAAAAAAAAAATCAGAACACACACAATTTTTTTTG-------GTTT 465
* * * ** * * ** * *
consensus_6965#0 GATCCGTTGGGACCAGGGGACACTTGGCCACTTTACGACTTTGTTTTGCCTAAATTGGGA 532
consensus_6965#1 TTTTAGTTGTGATTACGG------TTTTTGTTTTTGGGTTCTGTTTCTTTTTTTTTGAGA 515
consensus_6965#2 CTCCAAATATAATTAATTAATTATTGTTTTCTTCAGTTAATCATATTTTTCTAGTTGGA- 524
* * * * ** * * ***
consensus_6965#0 TCCATTGTTAATTATTTCTTCTTGTTATTGTAAGGTGTTACCGTTAACAACAATGAGTAT 592
consensus_6965#1 TTTTTTTTTTTTTGGACTTTGTACATTTTTGATATTGTACCTTATATTTATATTTTGTCT 575
consensus_6965#2 --TCTTCGCCCTTGGCCCTGTGGGATCTCCTCCAACTTTTCTGATAATAGGATTTGTTTA 582
** ** * * * * * ** * * *
consensus_6965#0 TGTTTTTTTTTCCTCCACTTCCTTT--TAATTGAAAAATTGACCCACCTTTTTTGTTTCA 650
consensus_6965#1 TATTTTTTTCTTGTTGGCTGTTTTTGTTTCTTATTATATTTCCTTTTTTTCTTTGTATTT 635
consensus_6965#2 TACTAGTTCATCCGTCACAAAATGT-------AAGGTATACATGTATTTTAGATGGTTTC 635
* * ** * * * * ** ** ** *
consensus_6965#0 GAAAAAAAA-------- 659
consensus_6965#1 TTTATTACTGGGTGTTT 652
consensus_6965#2 ATTAATACAA------- 645
* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||