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Oryza sativa
cluster # 6967 cluster # 6967       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6967#0 length = 2027 sequences # 4  

consensusID : consensus_6967#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2027
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGAAATTCCCCCTAATCTCTGTCTCCCCCTCCCTCACGGCCTCACCTCTTCTCCCTCCAAATTCTCCATCCCCGGATCCCCCTCTCCTCCTCCTCCTCCGCCGCTCGTCGGAGCCGGAGGCGCGGCGGCCTTCTCCCGCGCCCTTCGTCTCCTCACACCCGCGGCGGCCGGCGAGAAGGCCCAGAGGCAAAGGCGTGAAGCGGCCTCCTCCCCCGGCGCGGCACCCTCGGACGCACGGCGGCCGGTGAGCAGGAGCAGGTTCGGAGGGGGCGACGCGGCCGGGCTCCTTCCACCGGCCAGCATCCTGGCTCGAGTCGAATTTTGAAGGAAGCATGAAGGTTGATGATGGTCCTGGCGTCAATGGCAGTAGGTGGGCCAAAATGATGAGCACAGATTCGTGGAGGTGGTGTTTAGGATTGATTTACATTGTTGCTGTTGCGAGTATATGGATTGCTGCAAGCTACATTGTTCAGTCTGTTGTGGATGAGGGTGTTTCTCCATTCTTGATTACCTACATATGCAATTCTCTATTTGTTATTTACATCCCAATAGTTGAGGCTGCACGATACTTTGAGGATTCTATCAACAACTTTTGGACAAAGTTGAAAGGCAAGGATGTTGCGGACCTGGAGCAGTCTGCTGATCTGGAGAGCATAAATCTTCTCCATGGAAGTGAACAAGAGGGCAATACAGCCTCACCAACAAGGTTGCCTGAAGACATATTGGCTTCAGAAGCAGTCTTCCCTGTCCAGGCCGAGCTGAATGTAGCAGATGGCAGCAAAGGGTTGGATGCAAAAGGGCGCTGGACACGTGCTCGTGTGGCTAGAGTCAGCATGGTAGTCTGCCCTTTCTGGTTTCTCGCTCAGCTTACATTCAACCTGTCTCTAAGATACACCACTGTTACATCAAATACGATATTGAGCAGCACGTCTAGCCTCTTCACTTTCTTGGTTGCACTAGTATTTCTTGGAGAAACATTCACGTGGTTGAAACTAATCAGTGTACTTCTCTGCATGGGAGGAACGATAATTGTTAGCCTAGCTGATTCAGGTAGTACAGCGAATACCATTGCCACAAATCCTCTACTTGGAGATGTCCTTTCTATTGTTTCAGCTGGATTGTACGCTGTGTATATCACCTTGATACGGAAAAAGCTGCCTGATGAGAAAGAAGGTCAAGGCGAAGTGAGCATGGCTCAGTTTCTTGGATTCCTTGGACTGTTTAACATGTTATTTTTCTTTCCTTTTGCATTGTTCTTGAATTTCACCAAGCTGGAGCCATTCCACAGGCTGACATGGGAGCAAGTTGGTCTTATTGTTGGAAAAGGTTTGTT-AGATAATG-TTTTGAGTGACTA-CTTGTGGGCAAAAGCAATCCTTCTCACAACAACAACA-GTAGCCACGGCTGGTCTCACGATCCAAGTTCCAATTGCTGCCA-TTGTGGATACACTAACAGGTCATGCTCCTCATCTATTGGACTACATCGGAGCTGCTGCTGTGTTGGTCGGTTTTG-CTGGCATCAACATACCTGTAGGCACTCCACAGGGTTCTCAGCAAGAGCAGGAAACTCCTATCGTCAGTATGGTTGATGATCCAGTCCATTTACCAAGTGATAGAAATGCTACTAGCATGGTTGATGATCCAGTCTATTTACCAAGTGATAGAAATGCTACTGGTGCTGTTCAATAAGGACCGGCTTGGCTTTGGAGTTTGTCACAATGTATATTTTTTTCGAGGAAAATTTTCATAATGTATATTATCAAGTAATGTATAAGGATGCGAGATCAGTACAGTTACTGTAATTGTTCCCCCTTGCCATGAAAATCATAGAGAAGGGGATAGACAGGGATTGAAATTAGATT-AACATGCTTT-CCTTGCTCATAATTTTGAGCAACTAGCCAATTGTGTTCGTTTTTGAGTTAAGCACGATTATGAAAACATTCAAGAGATTGAATAGAACATGTGTGTACTAAACATTCAAAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK104993             [TTCCTCGAGCACTGTTGGCCTACTGGAAATTCCCCCTAATCTCTGTCTCCCCCTCCCTCACGGCCTCACCTCTTCTCCCTCCAAATTCTCCATCCCCGGATCCCCCTCTCCTCCTCCTCCTCCGCCGCTCGTCGGAGCCGGAGGCGCGGCGGCCTTCTCCCGCGCCCTTCGTCTCCTCACACCCGCGGCGGCCGGCGAGAAGGCCCAGAGGCAAAGGCGTGAAGCGGCCTCCTCCCCCGGCGCGGCACCCTCGGACGCACGGCGGCCGGTGAGCAGGAGCAGGTTCGGAGGGGGCGACGCGGCCGGGCTCCTTCCACCGGCCAGCATCCTGGCTCGAGTCGAATTTTGAAGGAAGCATGAAGGTTGATGATGGTCCTGGCGTCAATGGCAGTAGGTGGGCCAAAATGATGAGCACAGATTCGTGGAGGTGGTGTTTAGGATTGATTTACATTGTTGCTGTTGCGAGTATATGGATTGCTGCAAGCTACATTGTTCAGTCTGTTGTGGATGAGGGTGTTTCTCCATTCTTGATTACCTACATATGCAATTCTCTATTTGTTATTTACATCCCAATAGTTGAGGCTGCACGATACTTTGAGGATTCTATCAACAACTTTTGGACAAAGTTGAAAGGCAAGGATGTTGCGGACCTGGAGCAGTCTGCTGATCTGGAGAGCATAAATCTTCTCCATGGAAGTGAACAAGAGGGCAATACAGCCTCACCAACAAGGTTGCCTGAAGACATATTGGCTTCAGAAGCAGTCTTCCCTGTCCAGGCCGAGCTGAATGTAGCAGATGGCAGCAAAGGGTTGGATGCAAAAGGGCGCTGGACACGTGCTCGTGTGGCTAGAGTCAGCATGGTAGTCTGCCCTTTCTGGTTTCTCGCTCAGCTTACATTCAACCTGTCTCTAAGATACACCACTGTTACATCAAATACGATATTGAGCAGCACGTCTAGCCTCTTCACTTTCTTGGTTGCACTAGTATTTCTTGGAGAAACATTCACGTGGTTGAAACTAATCAGTGTACTTCTCTGCATGGGAGGAACGATAATTGTTAGCCTAGCTGATTCAGGTAGTACAGCGAATACCATTGCCACAAATCCTCTACTTGGAGATGTCCTTTCTATTGTTTCAGCTGGATTGTACGCTGTGTATATCACCTTGATACGGAAAAAGCTGCCTGATGAGAAAGAAGGTCAAGGCGAAGTGAGCATGGCTCAGTTTCTTGGATTCCTTGGACTGTTTAACATGTTATTTTTCTTTCCTTTTGCATTGTTCTTGAATTTCACCAAGCTGGAGCCATTCCACAGGCTGACATGGGAGCAAGTTGGTCTTATTGTTGGAAAAGGTTTGTT AGATAATG TTTTGAGTGACTA CTTGTGGGCAAAAGCAATCCTTCTCACAACAACAACA GTAGCCACGGCTGGTCTCACGATCCAAGTTCCAATTGCTGCCA TTGTGGATACACTAACAGGTCATGCTCCTCATCTATTGGACTACATCGGAGCTGCTGCTGTGTTGGTCGGTTTTG CTGGCATCAACATACCTGTAGGCACTCCACAGGGTTCTCAGCAAGAGCAGGAAACTCCTATCGTCAGTATGGTTGATGATCCAGTCCATTTACCAAGTGATAGAAATGCTACTAGCATGGTTGATGATCCAGTCTATTTACCAAGTGATAGAAATACTACTGGTGCTGTTCAATAAGGACCGGCTTGGCTTTGGAGTTTGTCACAATGTATATTTTTTTCGAGGAAAATTTTCATAATGTATATTATCAAGTAATGTATAAGGATGCGAGATCAGTACAGTTACTGTAATTGTTCCCCCTTGCCATGAAAATCATAGAGAAGGGGATAGACAGGGATCGAAATTAGATT AACATGCTTT CCTTGCTCATAATTTTGAGCAACTAGCCAGTTGTGTTCGTTTTTGAGTTAAGCACGATTATGAAAACATTCAAGAGATTGAATAGAACATGTGTGTACTAAACATTCAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL BI813352             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGTTGGAAAAGGTTGGTTAAAATAATGTTTTTGAGTGACTACCTTGTGGCCAAA  C ATCCTTCTCACGACGACCACACGTAGCCAC GCTGGTCTCACGATCCAAGTTCC ATTGCTGCCACTTGTGGATACACTAACAGGTCATGCTCCTCATCTATTGGACTACATCGGAGCTGCTGCTGTGTT GTCGGTTTTG CTGGCATCAACATACCTGTAGGCACTCCACAGGGTTCTCAGCAAGA CAGGAAACTCCTATCGTCAGTATGGTTGATGATCCAGTCCATTTACCAAGTGATAGAAATGCTACTAGCATGGTTGATGATCCAGTCTATTTACCAAGTGATAGAAATGCTACTGGTGCTGTTCAATAAGGACCGGCTTGGCTTTGGAGTTTGTCACAATGTATATTTTTTTCGAGGAAAATTTTCATAATGTATATTATCAAGTAATGTATAAGGATGCGAGATCAGTACAGTTACTGTAATTGTTCCCCCTTGCCATGAAAATCATAGAGAAGGGGATAGACAGGGATTGAAATTAGATT AACATGCTTT CCTTGCTCATAATTTTGAGCAACTAaaaaa                                                                                                         ]
[+] EMBL BM420568             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACATCGGAGCTGCT CTGTGTTGGTCGGTTTTG CTGGCATCAACATACCTGTAGGCACTCCACAGGGTTCTCAGCAAGAGCAGGAAACTCCTATCGTCAGTATGGTTGATGATCCAGTCCATTTACCAAGTGATAGAAATGCTACTAGCATGGTTGATGATCCAGTCTATTTACCAAGTGATAGAAATGCTACTGGTGCTGTTCAATAAGGACCGGCTTGGCTTTGGAGTTTGTCACCATGTATATTTTTTTCGAGGAAAATTTTCATAATGTATATTATCAAGTAATGTATAAGGATGCGAGATCAGTACAGTTACTGTAATTGTTCCCCCTTGCCATGAAAATCATAGAGAAGGGGATAGACAGGGATTGAAATTAGATTCAACATGCTTT CCTTGCTCATAAaaaaaaa                                                                                                                    ]
[+] EMBL BI806640             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTTGTCTGGCATCAACATACCTGTAGGCACTCCACAGGGTTCTCAGCAAGAGCAGGAAACTCCTATCGTCAGTATGGTTGATGATCCAGTCCANTTACC AGTGATAGAAATGCTACTAGCATGGTTGATGATCC GTCTATTTACC AGTGATAGAAATGCTACTGGTGCTGTTC ATAAGGACCGGCTTGGCTTTGGAGTTTGTCAC ATGTATATTTTTTTCGAGGANNCTTTTCATAATGTATATTATCAAGTAATGTATAAGGATGCGAGATCAGTACAGTTACTGTAATTGTTCCCCCTTGCCATGAAAATCATAGAGAAGGGGATAGACAGGGATTGAAATTAGATT NACATGCTTTCCCTTGCTCATAATTTTGA C ACTAGCCAAaa                                                                                                       ]


>consensus_6967#0 TTCCTCGAGCACTGTTGGCCTACTGGAAATTCCCCCTAATCTCTGTCTCCCCCTCCCTCA CGGCCTCACCTCTTCTCCCTCCAAATTCTCCATCCCCGGATCCCCCTCTCCTCCTCCTCC TCCGCCGCTCGTCGGAGCCGGAGGCGCGGCGGCCTTCTCCCGCGCCCTTCGTCTCCTCAC ACCCGCGGCGGCCGGCGAGAAGGCCCAGAGGCAAAGGCGTGAAGCGGCCTCCTCCCCCGG CGCGGCACCCTCGGACGCACGGCGGCCGGTGAGCAGGAGCAGGTTCGGAGGGGGCGACGC GGCCGGGCTCCTTCCACCGGCCAGCATCCTGGCTCGAGTCGAATTTTGAAGGAAGCATGA AGGTTGATGATGGTCCTGGCGTCAATGGCAGTAGGTGGGCCAAAATGATGAGCACAGATT CGTGGAGGTGGTGTTTAGGATTGATTTACATTGTTGCTGTTGCGAGTATATGGATTGCTG CAAGCTACATTGTTCAGTCTGTTGTGGATGAGGGTGTTTCTCCATTCTTGATTACCTACA TATGCAATTCTCTATTTGTTATTTACATCCCAATAGTTGAGGCTGCACGATACTTTGAGG ATTCTATCAACAACTTTTGGACAAAGTTGAAAGGCAAGGATGTTGCGGACCTGGAGCAGT CTGCTGATCTGGAGAGCATAAATCTTCTCCATGGAAGTGAACAAGAGGGCAATACAGCCT CACCAACAAGGTTGCCTGAAGACATATTGGCTTCAGAAGCAGTCTTCCCTGTCCAGGCCG AGCTGAATGTAGCAGATGGCAGCAAAGGGTTGGATGCAAAAGGGCGCTGGACACGTGCTC GTGTGGCTAGAGTCAGCATGGTAGTCTGCCCTTTCTGGTTTCTCGCTCAGCTTACATTCA ACCTGTCTCTAAGATACACCACTGTTACATCAAATACGATATTGAGCAGCACGTCTAGCC TCTTCACTTTCTTGGTTGCACTAGTATTTCTTGGAGAAACATTCACGTGGTTGAAACTAA TCAGTGTACTTCTCTGCATGGGAGGAACGATAATTGTTAGCCTAGCTGATTCAGGTAGTA CAGCGAATACCATTGCCACAAATCCTCTACTTGGAGATGTCCTTTCTATTGTTTCAGCTG GATTGTACGCTGTGTATATCACCTTGATACGGAAAAAGCTGCCTGATGAGAAAGAAGGTC AAGGCGAAGTGAGCATGGCTCAGTTTCTTGGATTCCTTGGACTGTTTAACATGTTATTTT TCTTTCCTTTTGCATTGTTCTTGAATTTCACCAAGCTGGAGCCATTCCACAGGCTGACAT GGGAGCAAGTTGGTCTTATTGTTGGAAAAGGTTTGTTAGATAATGTTTTGAGTGACTACT TGTGGGCAAAAGCAATCCTTCTCACAACAACAACAGTAGCCACGGCTGGTCTCACGATCC AAGTTCCAATTGCTGCCATTGTGGATACACTAACAGGTCATGCTCCTCATCTATTGGACT ACATCGGAGCTGCTGCTGTGTTGGTCGGTTTTGCTGGCATCAACATACCTGTAGGCACTC CACAGGGTTCTCAGCAAGAGCAGGAAACTCCTATCGTCAGTATGGTTGATGATCCAGTCC ATTTACCAAGTGATAGAAATGCTACTAGCATGGTTGATGATCCAGTCTATTTACCAAGTG ATAGAAATGCTACTGGTGCTGTTCAATAAGGACCGGCTTGGCTTTGGAGTTTGTCACAAT GTATATTTTTTTCGAGGAAAATTTTCATAATGTATATTATCAAGTAATGTATAAGGATGC GAGATCAGTACAGTTACTGTAATTGTTCCCCCTTGCCATGAAAATCATAGAGAAGGGGAT AGACAGGGATTGAAATTAGATTAACATGCTTTCCTTGCTCATAATTTTGAGCAACTAGCC AATTGTGTTCGTTTTTGAGTTAAGCACGATTATGAAAACATTCAAGAGATTGAATAGAAC ATGTGTGTACTAAACATTCAAAAAAAAAAAAAAAAAAAAGGCCACAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)