These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1691 fasta sequence [CTCGCCTCGCGTCCCCGCGATTTCTCACTCGCCATCGCCGACGAGATCCTCGCCACCGCGCCGCCCCCACCCCCCTCATGGCGGCCGCGCGGCGGGTGGCGGGCGGCGGCGGTGGCAGCCTGTGGGGCCCGCCTCAGCCGCCGCCGTCGACCGGAGGGGGCATCCCCCAGCTCCCCGCCGCGGCCGCCGCCCCAGTGGAGGGCCTCCTCGACGCCCCCTTCTCTTCCTCCTCCGGTGGCGGTGGCGGCGGCTGGCCGCCGCCGCCGCCGCCGCTCTCCGGCACCGCCGTCCTCATCGGGTACCCCCAGGGCAACTTTGAAACTTTCCCTCAACAGGACTTGGTACCTTTAACAGCACAAGAGGTTCATTCTAAGTGCATTACATTCGGTCGAGCAGAGAACCTGCCTTTTATCCCTTTGGCGACTTCAGCGCTGGTCTCCCAACATACTGGTTCTTCTTCTGTAAATGTGACACCGTTGCAAGAAATTCTGACTTCGCCGTCGCAAATAAGCAATGTCAACACTGAATCTATTGGGGTGTTACAAGGGCTCCCAGCTTCATCCATCGTTCTGGATAGACCTACTGATGATGGATACAACTGGCGAAAGTATGGTCAGAAGGCAGTGAAGGGTGGGGAATATCCAAAGAGCTACTACAAATGCACCCATCTGAACTGTTTGGTCAGGAAAAATGTGGAGCACTCTGCAGATGGACGAATCGTTCAGATAATTTACAGAGGACAACACACTCATGAACGGCCCTCAAAAAGGAGGTTTAAAGATTGTGGTGGTATATCAGATGATTTAGACGATTTCAGTGGCACCACGGGCACTTCAGTCAGATCACAGCCTGATTACGATGATTACTGCAGAAAGCCTATCATTCCAAGTGGCACCATGGTTGCTCCTTTAGTGAAAAAGATTGAAGATGGTGATGACCAATTGTCTGGATCAAGTGATAACCAGGATGAGCATGATGATGAGGTGAGGACTTCTGATGGAGCTTCCGGTGATGCCAGTGCAAATGAAAGGAATGTGCCAGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACTGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCAATGGGATATGCAGAAGTTGTGATTTCTGAACCTGATGGAGCTTCACTCTTGGTCAGACCTTTTAATGTGTGATGCTGTTGTACTAGTACATATCAACATGATTGATTTTCAGTAAAGCAAAAAAAAAAA] [+] EMBL AY341847 [CTCGCCTCGCGTCCCCGCGATTTCTCACTCGCCATCGCCGACGAGATCCTCGCCACCGCGCCGCCCCCACCCCCCTCATGGCGGCCGCGCGGCGGGTGGCGGGCGGCGGCGGTGGCAGCCTGTGGGGCCCGCCTCAGCCGCCGCCGTCGACCGGAGGGGGCATCCCCCAGCTCCCCGCCGCGGCCGCCGCCCCAGTGGAGGGCCTCCTCGACGCCCCCTTCTCTTCCTCCTCCGGTGGCGGTGGCGGCGGCTGGCCGCCGCCGCCGCCGCCGCTCTCCGGCACCGCCGTCCTCATCGGGTACCCCCAGGGCAACTTTGAAACTTTCCCTCAACAGGACTTGGTACCTTTAACAGCACAAGAGGTTCATTCTAAGTGCATTACATTCGGTCGAGCAGAGAACCTGCCTTTTATCCCTTTGGCGACTTCAGCGCTGGTCTCCCAACATACTGGTTCTTCTTCTGTAAATGTGACACCGTTGCAAGAAATTCTGACTTCGCCGTCGCAAATAAGCAATGTCAACACTGAATCTATTGGGGTGTTACAAGGGCTCCCAGCTTCATCCATCGTTCTGGATAGACCTACTGATGATGGATACAACTGGCGAAAGTATGGTCAGAAGGCAGTGAAGGGTGGGGAATATCCAAAGAGCTACTACAAATGCACCCATCTGAACTGTTTGGTCAGGAAAAATGTGGAGCACTCTGCAGATGGACGAATCGTTCAGATAATTTACAGAGGACAACACACTCATGAACGGCCCTCAAAAAGGAGGTTTAAAGATTGTGGTGGTATATCAGATGATTTAGACGATTTCAGTGGCACCACGGGCACTTCAGTCAGATCACAGCCTGATTACGATGATTACTGCAGAAAGCCTATCATTCCAAGTGGCACCATGGTTGCTCCTTTAGTGAAAAAGATTGAAGATGGTGATGACCAATTGTCTGGATCAAGTGATAACCAGGATGAGCATGATGATGAGGTGAGGACTTCTGATGGAGCTTCCGGTGATGCCAGTGCAAATGAAAGGAATGTGCCAGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACTGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCC ] [-] EMBL CA759399 [ AAGGAATGTGCCAGCCCCAGGTCAAAAGATNATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTNATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCAATGGGATATGCAGAAGTTGTGATTTCTGAACCTGATGGAGCTTCACTCTTGGTCAGACCTTTTAATGTGTGATGCTGTTGTACTAGTACATATCAACATGATTGATTTTCAGTAAAGCAAAAAAAAAAA] consensusID : consensus_6969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TGCCGTCTGGGGCGCCGCAGCCGGGCGCCGGCAGATCGACCCCCGCCGGCGGGCGCCGCGGCGACGGCCTGCGCGCGCCGCGCGANCTGACACGCNTGNNNCNGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCGATGGGATATGCAGAAGTTGTGATTTCTGAACCAAAAAAAAAAAAA] [-] EMBL CA759398 [TGCCGTCTGGGGCGCCGCAGCCGGGCGCCGGCAGATCGACCCCCGCCGGCGGGCGCCGCGGCGACGGCCTGCGCGCGCCGCGCGANCTGACACGCNTGNNNCNGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCGATGGGATATGCAGAAGTTGTGATTTCTGAACCAAAAAAAAAAAAA] consensusID : consensus_6969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [AGTGAGATCGATCTTTTGGATGATGGTTATNGGTGGNGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAAGCTGTGATGTGCCTGCTGCNAGGAACNAAAACCNTGTCNTNACCAATGCCTCTCNGNTGCNNAACNCNAANTCGAATACCTACAGNNCAGANCAATCCTNCACCACGATCACGTGCTANATTCTGCCNTACANCCGTCTGATTGCTCNTGTGTTNCNTTTCTGAANCTGTGTNTTTTATCNGCCGTGCCACTAACCAAGCGATTTTTGGCACCNNTGTGCCNTGTATTTTTCCNNCNGCAAGCATNCCTTCTCCTATTTGGGAANGNCCNAATTGTNATATTGATTTCTGCNNCTGCTATTTCCATGGGATATGCNGAAATTGTNATTT] [+] EMBL BE228959 [AGTGAGATCGATCTTTTGGATGATGGTTATNGGTGGNGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAAGCTGTGATGTGCCTGCTGCNAGGAACNAAAACCNTGTCNTNACCAATGCCTCTCNGNTGCNNAACNCNAANTCGAATACCTACAGNNCAGANCAATCCTNCACCACGATCACGTGCTANATTCTGCCNTACANCCGTCTGATTGCTCNTGTGTTNCNTTTCTGAANCTGTGTNTTTTATCNGCCGTGCCACTAACCAAGCGATTTTTGGCACCNNTGTGCCNTGTATTTTTCCNNCNGCAAGCATNCCTTCTCCTATTTGGGAANGNCCNAATTGTNATATTGATTTCTGCNNCTGCTATTTCCATGGGATATGCNGAAATTGTNATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CTCGCCTCGCGTCCCCGCGATTTCTCACTCGCCATCGCCGACGAGATCCTCGCCACCGCG 60 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CCGCCCCCACCCCCCTCATGGCGGCCGCGCGGCGGGTGGCGGGCGGCGGCGGTGGCAGCC 120 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TGTGGGGCCCGCCTCAGCCGCCGCCGTCGACCGGAGGGGGCATCCCCCAGCTCCCCGCCG 180 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CGGCCGCCGCCCCAGTGGAGGGCCTCCTCGACGCCCCCTTCTCTTCCTCCTCCGGTGGCG 240 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 GTGGCGGCGGCTGGCCGCCGCCGCCGCCGCCGCTCTCCGGCACCGCCGTCCTCATCGGGT 300 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 ACCCCCAGGGCAACTTTGAAACTTTCCCTCAACAGGACTTGGTACCTTTAACAGCACAAG 360 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 AGGTTCATTCTAAGTGCATTACATTCGGTCGAGCAGAGAACCTGCCTTTTATCCCTTTGG 420 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CGACTTCAGCGCTGGTCTCCCAACATACTGGTTCTTCTTCTGTAAATGTGACACCGTTGC 480 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 AAGAAATTCTGACTTCGCCGTCGCAAATAAGCAATGTCAACACTGAATCTATTGGGGTGT 540 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TACAAGGGCTCCCAGCTTCATCCATCGTTCTGGATAGACCTACTGATGATGGATACAACT 600 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 GGCGAAAGTATGGTCAGAAGGCAGTGAAGGGTGGGGAATATCCAAAGAGCTACTACAAAT 660 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 GCACCCATCTGAACTGTTTGGTCAGGAAAAATGTGGAGCACTCTGCAGATGGACGAATCG 720 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TTCAGATAATTTACAGAGGACAACACACTCATGAACGGCCCTCAAAAAGGAGGTTTAAAG 780 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 ATTGTGGTGGTATATCAGATGATTTAGACGATTTCAGTGGCACCACGGGCACTTCAGTCA 840 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 GATCACAGCCTGATTACGATGATTACTGCAGAAAGCCTATCATTCCAAGTGGCACCATGG 900 consensus_6969#1 -----------------------------------TGCCGTCTGGGGCGCCGCAGCCGGG 25 consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TTGCTCCTTTAGTGAAAAAGATTGAAGATGGTGATGACCAATTGTCTGGATCAAGTGATA 960 consensus_6969#1 CGCCGGCAGATCGACCCCCGCCGGCGGGCGCCGCGGCGACGGCCTGCGC--GCGCCGCGC 83 consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 ACCAGGATGAGCATGATGATGAGGTGAGGACTTCTGATGGAGCTTCCGGTGATGCCAGTG 1020 consensus_6969#1 GANCTGACACGCNTGNNNCNGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGA 143 consensus_6969#2 -----------------------------------------------------AGTGAGA 7 consensus_6969#0 CAAATGAAAGGAATGTGCCAGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGA 1080 ******* consensus_6969#1 TCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAA 203 consensus_6969#2 TCGATCTTTTGGATGATGGTTATNGGTGGNGAAAATATGGACAGAAAGTGGTGAAAGGAA 67 consensus_6969#0 TCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAA 1140 *********************** ***** ****************************** consensus_6969#1 ATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAG 263 consensus_6969#2 ATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAAGCTGTGATGT----------- 116 consensus_6969#0 ATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAG 1200 ************************************** ********** consensus_6969#1 TTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCC 323 consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCC 1260 consensus_6969#1 ATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGA 383 consensus_6969#2 -------GCCTGCTGCNAGGAACNAAAACCNTGTCNTNACCAATGCCTCTCNGNTGCNNA 169 consensus_6969#0 ATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGA 1320 ********* ****** *** ** **** * ************ *** * consensus_6969#1 ACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTC 443 consensus_6969#2 ACNCNAANTCGAATACCTACAGNNCAGANCAATCCTNCACCACGATCACGTGCTANATTC 229 consensus_6969#0 ACACAAAGTCGAATACCTACTGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTC 1380 ** * ** ************ * **** ******* *** ******** ***** **** consensus_6969#1 TGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGC 503 consensus_6969#2 TGCCNTACANCCGTCTGATTGCTCNTGTGTTNCNTTTCTGAANCTGTGTNTTTTATCNGC 289 consensus_6969#0 TGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGC 1440 **** **** ************** * *** * ******** ****** ******* ** consensus_6969#1 CGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAG 563 consensus_6969#2 CGTGCC-ACTAACCAAGCGATTTTTGGCACCNNTGTGCCNTGTATTTTTCCNNCNGCAAG 348 consensus_6969#0 CGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAG 1500 *** ** ****** * *************** ****** *********** * ***** consensus_6969#1 CATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTT 623 consensus_6969#2 CATNCCTTCTCCTATTTGGGAANGNCCNAATTGTNATATTGATTTCTGCNNCTGCTATTT 408 consensus_6969#0 CATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTT 1560 *** * ** ************* ** ****** ************** ******** consensus_6969#1 CGATGGGATATGCAGAAGTTGTGATTTCTGAACCAAAAAAAAAAAAA------------- 670 consensus_6969#2 CCATGGGATATGCNGAAATTGTNATTT--------------------------------- 435 consensus_6969#0 CAATGGGATATGCAGAAGTTGTGATTTCTGAACCTGATGGAGCTTCACTCTTGGTCAGAC 1620 * *********** *** **** **** consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CTTTTAATGTGTGATGCTGTTGTACTAGTACATATCAACATGATTGATTTTCAGTAAAGC 1680 consensus_6969#1 ----------- consensus_6969#2 ----------- consensus_6969#0 AAAAAAAAAAA 1691 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||