These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 894 fasta sequence [CAGCGAACGAGGAGTTTTGCGGCAGCGGCGGCTCGTGGACGCGGCGGCGGAGTAATGGCCGGGGAGGAGACGGCGTCGGGCTCCAAGCCGCCGGCGGCAGCGACGACCATCCGCCTCGTCAACTTCATCTCCGAGGACCAGCTTGACGAGGCGAAGCGGACGAGAGGGGAGCGGGCGGACGACGGCACCGCCCAGCGCGACAAGCCGCTCTTCCAGATCCTGCAGGAGAACAAGGAGAAGAAGGATGCCGAGTTCAACGAGCGGTTCAAGCACAGACCTCCAAAAGCCTTGGATGAAGATGAGATGGAGTTTCTTGACAAACTTGCATCATCAAGGAAGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACTAATGCACGAATACACTTATAACCCTGGTGTTTTTTTTCCCAGTTCTACCTG] [+] EMBL AK064712 [CAGCGAACGAGGAGTTTTGCGGCAGCGGCGGCTCGTGGACGCGGCGGCGGAGTAATGGCCGGGGAGGAGACGGCGTCGGGCTCCAAGCCGCCGGCGGCAGCGACGACCATCCGCCTCGTCAACTTCATCTCCGAGGACCAGCTTGACGAGGCGAAGCGGACGAGAGGGGAGCGGGCGGACGACGGCACCGCCCAGCGCGACAAGCCGCTCTTCCAGATCCTGCAGGAGAACAAGGAGAAGAAGGATGCCGAGTTCAACGAGCGGTTCAAGCACAGACCTCCAAAAGCCTTGGATGAAGATGAGATGGAGTTTCTTGACAAACTTGCATCATCAAGGAAGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACTAATGCACGAATACACTTATAACCCTGGTGTTTTTTTTCCCAGTTCTACCTG] [+] EMBL AU070839 [ GCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTNTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACT ] [+] EMBL AU101696 [ CAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTTTTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCCATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAACAATACTAATGCACGAAana ] consensusID : consensus_6971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [ATGGAACTCCCCCTTCATGTAGTAGAGATTTATATTAGATTGAATTATTATTATTCAAGATGATTGTTCTTGATTCATGACAACAACTATCCATTGGGTTGGCAATTATCATACAAATTTAAATGGTACAAAGTTGATCTGAAGTCAAATGCTTCGATAGCTTGATTGTATTTGTAATCTCCAAGTTAATTCACAGTCTTTGTTATTTGAATACATGAGAAATTATGGAGTGCAAACATATGTGCTTTTAGGTATATTGAATGTATCTATAGCCCATGCTTTTGCAACATCTTAAATCCTCCTTTTATGCCACCTTTGTGCAGTCAAGGAGGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGNTTTGCTGGCTGGTGTCTGGCAAAAATATGGTTTTTNCTGGTTTCCCTGNGCATTAATATCCATGATTTTCTTGNAGC] [+] EMBL CA765296 [ATGGAACTCCCCCTTCATGTAGTAGAGATTTATATTAGATTGAATTATTATTATTCAAGATGATTGTTCTTGATTCATGACAACAACTATCCATTGGGTTGGCAATTATCATACAAATTTAAATGGTACAAAGTTGATCTGAAGTCAAATGCTTCGATAGCTTGATTGTATTTGTAATCTCCAAGTTAATTCACAGTCTTTGTTATTTGAATACATGAGAAATTATGGAGTGCAAACATATGTGCTTTTAGGTATATTGAATGTATCTATAGCCCATGCTTTTGCAACATCTTAAATCCTCCTTTTATGCCACCTTTGTGCAGTCAAGGAGGGAATATGAGCAGCAGGTGGCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAATATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAAAGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAAGCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGTGCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGATGATGATGAAAGCAGTGATGGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGNTTTGCTGGCTGGTGTCTGGCAAAAATATGGTTTTTNCTGGTTTCCCTGNGCATTAATATCCATGATTTTCTTGNAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6971#0 CAGCGAACGAGGAGTTTTGCGGCAGCGGCGGCTCGTGGACGCGGCGGCGGAGTAATGGCC 60 consensus_6971#1 -ATGGAACTCC--CCCTTCATGTAGTAGAGATTTATATTAG----ATTGAATTATTATTA 53 * **** ** * ** * * * * * * * ** * consensus_6971#0 GGGGAGGAGACGGCGTCGGGCTCCAAGCCGCCGGCGGCAGCGACGACCATCCGCCTCGT- 119 consensus_6971#1 TTCAAGATGATTGTTCTTGATTCATGACAACAACTATCCATTGGGTTGGCAATTATCATA 113 ** ** * * ** * * * * ** * consensus_6971#0 CAACTTCATCTCCGAGGACCAGCTTGAC--GAGGCGAAGCGGACGAGAGGGGAGCGGGCG 177 consensus_6971#1 CAAATTTAAAT---GGTACAAAGTTGATCTGAAGTCAAATGCTTCGATAGCTTGATTGTA 170 *** ** * * * ** * **** ** * ** * * * * consensus_6971#0 GACGACGGCACCGCCCAGCGCGACAAGCCGCTCTTCCAGATCCTGCAGGAGAACAAGGAG 237 consensus_6971#1 TTTGTAATCTCCAAGTTAATTCACAGTCTTTGTTATTTGAATACATGAGAAATTATGGAG 230 * * ** *** * * ** ** * * **** consensus_6971#0 AAGAAGGATGCCGAGTTCAACGAGCGGTTCAAGCACAGACCTCCAAAAGCCTTGGATGAA 297 consensus_6971#1 TGCAAACATATGTGCTTTTAGGTATATTGAATGTATCTATAGCCCATGCTTTTGCAACAT 290 ** ** ** * * * * * * * ** * *** * * consensus_6971#0 GATGAGATGGAGTTTCTTGACAAACTTGCATCATCAAGGAAGGAATATGAGCAGCAGGTG 357 consensus_6971#1 CTTAAATCCTCCTTTTATGCCACCTTTGTGCAGTCAAGGAGGGAATATGAGCAGCAGGTG 350 * * *** ** ** *** ******* ******************* consensus_6971#0 GCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAAT 417 consensus_6971#1 GCTAATGAAGAAGCTGAACAACTCCGCAGTTTCCAAGAGGCGGTCGCGGCCCGGTCTAAT 410 ************************************************************ consensus_6971#0 ATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAA 477 consensus_6971#1 ATTATACATGAAGAGGCTCCTACAGTCTCGAGACCAGAGGAGAGCAAGCCTAAGGCAAAA 470 ************************************************************ consensus_6971#0 AGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAA 537 consensus_6971#1 AGGAGCCAACCTGCACTCCTGAAAAATGTAATAATTTCGGTGAAACCACAAGCGAAGAAA 530 ************************************************************ consensus_6971#0 GCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGT 597 consensus_6971#1 GCAAAGTTAGATGGGGAAGATAAGCCTCCTGCGAAGGAGCTTCCTTCAAATGGGCACAGT 590 ************************************************************ consensus_6971#0 GCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGAT 657 consensus_6971#1 GCAGATCACAAGCCCCCAGATGCCACCAAGGGCGTGCTTGGTTCTCTGGTGCAGTATGAT 650 ************************************************************ consensus_6971#0 GATGATGAAAGCAGTGATGGGG-ACGTATGACAACTGTAACAGAGCAACAGTCTGAGGTT 716 consensus_6971#1 GATGATGAAAGCAGTGATGGGGGACGTATGACAACTGTAACAGAGCAACAGTCTGAGGNT 710 ********************** *********************************** * consensus_6971#0 TTGCTGGCTGGTGTCTGGCAAAAATATGTTTTTTCCTGTTTTCCCTGTGCATTAATATCC 776 consensus_6971#1 TTGCTGGCTGGTGTCTGGCAAAAATATGGTTTTTNCTGGTTTCCCTGNGCATTAATATCC 770 **************************** ***** *** ******** ************ consensus_6971#0 ATGATTTTCTTGTAGCGTGTGAATTTATTGTCAGCGGTGATGATAATTTGATAACGAAAA 836 consensus_6971#1 ATGATTTTCTTGNAGC-------------------------------------------- 786 ************ *** consensus_6971#0 CAATACTAATGCACGAATACACTTATAACCCTGGTGTTTTTTTTCCCAGTTCTACCTG 894 consensus_6971#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||